Os03g0300300

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Revision as of 12:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0300300| Description = WD40-like domain containing protein| Version = NM_001056391.1 GI:115452510 GeneID:4332567| Length = 5482 bp| Defini...")
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Gene Name

Os03g0300300

Description

WD40-like domain containing protein

Version

NM_001056391.1 GI:115452510 GeneID:4332567

Length

5482 bp

Definition

Oryza sativa Japonica Group Os03g0300300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:10606895..10612376

Sequence Coding Region

10606981..10607074,10607181..10607332,10607420..10607535,10607707..10607861,10608605..10608693
,10608823..10609357,10609486..10609653,10610305..10610483,10610605..10610684
,10610782..10610890,10611906..10611980,10612076..10612237

Expression

GEO Profiles:Os03g0300300

Genome Context

<gbrowseImage1> name=NC_008396:10606895..10612376 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:10606895..10612376 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcccgcggccgccaccatccgcgacctgctcacctccttcagccccgccgcggacttcctcgccctctcctctggcgacggccgcatcaaggtatgggacgccgtgcgcggccaccttcagaccgagttcgctgatatcccgccggtggaggtgggcggcggcgcgcgcgcccccggggcgaagcgcggtcacctcgcactggactacacctgcatgaagtgggtacagctatcgagcaagaagaagcggaaggcagggagttcgctgctggtgcttggcactggcagtggagatgtccttgcacttgatgtcgccgcagggcagtggaagtggagggtcactgattgccaccctgggggtgtcacagctgtagcctactcgaagcatgggcgaagtttgtacaccggaggcactgatggcatggtctgtaggatcaatgcctcagatggctctgttgtagagaaatttaaatcttcatcaaaagcaatttctgcattagctgtgtcaccagatggggagattttagcaacagctgctggccagttgaggacctttgatgcttctgataacaagaagattcaaaaattctctggccatccagtagctgtgaggagcatggtttttagtggtgatagccaatatgttctgtcatctggagttggggaacgctatgttgccatttggaagttgggtagtggtaaaactcagagttcaagctgtatactctctatggagcatccagcgatctttgtggactgtaaatgttcagacattaatgatacagaaggagaaatacatgtgttggctatttctgagattggtgtctgctacttttggtctgggactaatatggatgacctgcgtaataagaagcccactaaaattgcattgtctgattcctctctttcaagatctaagcaaggttttgcaatatttgccgcaaaactgcaaggaatagatggccctaattctgcacatgttctgctggcttatggatctgtggtgaaaccgtcttttgacaaactgttggttcgttatggcatggatattagtttgggtgtatctgatgatggagttctcttacccatgattcaacccacaaagcctcagaaaggccaatctgctaaaaagcaaggaattataacggctctagaccgtgctaatgcagaagatgcaatccttcctctcccacagctccatacgcaggaaaagaaaaggaaacataatgcaacagaatccagtggtgacatccagtctgcacctcatagtgaccttagttctacaaaattgattgagaaaagagctcctatgcaaagaattgaagatgacagtgtatgcatcgaagacatgatgcggaagtgtggagttattgattctagagttgatcagggcatggaaggtcatcctagcatacccactagtattttatctgatctatttggcagcagcagtaaaatcgatgctaatttacccaacaagaagattcgagcacatctaagatccttgaagcctggagatgcttgcgaacttttagaaaaattagtatcttcatggaaaacaagatctggtagtgcagaggttgttttgcggtggatatactgcttattaattatccatggtcgttttatcccctttgagaaatctaaaaaaataattagcgaccttgagaagatgtgtggggaaagatacaaagcagctgaagatttactgaagctttctggtcgtcttcgattgctcatggctcagatcgtcaaggatccaaacgatgtttctgagcttccatcagaggagatgcaggattcagcggctgctcagtctgatgaagaggaggaagatgatgaaattgatgaaacggtgtatggtgaagacgctgattcgtctcaaacaagtgatgacgacgctgaatag</cdnaseq>

Protein Sequence

<aaseq>MAPAAATIRDLLTSFSPAADFLALSSGDGRIKVWDAVRGHLQTE FADIPPVEVGGGARAPGAKRGHLALDYTCMKWVQLSSKKKRKAGSSLLVLGTGSGDVL ALDVAAGQWKWRVTDCHPGGVTAVAYSKHGRSLYTGGTDGMVCRINASDGSVVEKFKS SSKAISALAVSPDGEILATAAGQLRTFDASDNKKIQKFSGHPVAVRSMVFSGDSQYVL SSGVGERYVAIWKLGSGKTQSSSCILSMEHPAIFVDCKCSDINDTEGEIHVLAISEIG VCYFWSGTNMDDLRNKKPTKIALSDSSLSRSKQGFAIFAAKLQGIDGPNSAHVLLAYG SVVKPSFDKLLVRYGMDISLGVSDDGVLLPMIQPTKPQKGQSAKKQGIITALDRANAE DAILPLPQLHTQEKKRKHNATESSGDIQSAPHSDLSSTKLIEKRAPMQRIEDDSVCIE DMMRKCGVIDSRVDQGMEGHPSIPTSILSDLFGSSSKIDANLPNKKIRAHLRSLKPGD ACELLEKLVSSWKTRSGSAEVVLRWIYCLLIIHGRFIPFEKSKKIISDLEKMCGERYK AAEDLLKLSGRLRLLMAQIVKDPNDVSELPSEEMQDSAAAQSDEEEEDDEIDETVYGE DADSSQTSDDDAE</aaseq>

Gene Sequence

<dnaseqindica>87..180#287..438#526..641#813..967#1711..1799#1929..2463#2592..2759#3411..3589#3711..3790#3888..3996#5012..5086#5182..5343#gagcaaaacctttcgccgcgcagccacctaaacccctctcctcccccttcctctcccgccgccgccgcgcgcgcgagccggcggccatggcgcccgcggccgccaccatccgcgacctgctcacctccttcagccccgccgcggacttcctcgccctctcctctggcgacggccgcatcaaggcatggagctcgaagctttccgcccgcccatcctccaaaccgccgggagctgcacggttactgatgatgccatgggctaactcgatcctttccacctccattgcaggtatgggacgccgtgcgcggccaccttcagaccgagttcgctgatatcccgccggtggaggtgggcggcggcgcgcgcgcccccggggcgaagcgcggtcacctcgcactggactacacctgcatgaagtgggtacagctatcgagcaaggtgagcattgcccccgaattttcgagcttctacggttggtgttgtggtaccgtgtgcctatcgtgtgctcgtgtttttgccttgcagaagaagcggaaggcagggagttcgctgctggtgcttggcactggcagtggagatgtccttgcacttgatgtcgccgcagggcagtggaagtggagggtcactgattgccaccctgggtacgtttggtgcttccatgggaactcgtggcttcatttgttaaactatactccaagctcattgaacccttgattgtcgctttgaacatgtttggaatttctatgttaatctccgcaagctttagctagatgtgttctcttacattggagtgcttgtttttatgtgttcaggggtgtcacagctgtagcctactcgaagcatgggcgaagtttgtacaccggaggcactgatggcatggtctgtaggatcaatgcctcagatggctctgttgtagagaaatttaaatcttcatcaaaagcaatttctgcattagctgtgtcaccaggtatgcccatgaaattacgccgctggttttatgtctggtttcacccccactgaactccccatttgctaactatgcatacactactttacttcctatgttgtgtgcccgttggtcatctggtttacctatattgatgttttaggatattaaactgtcttctttaatatttgtcaactgtaacttgattgccctgagggacactaataatagttgaagtgttgagtgttttctgtaacctttgtaatgaataacattttcaacttattttgccgtgctattgtgttgatgccccgctgttggctaatttatggcctaggagttctaagtgcctcttgagatgttcccttttcacatgtaacattaatgttcttctcgaagtagagatggaaatgtaacataggtatacctgtcggacacacgaattgaataaaaaaaagcccagagttcttccttgaaatatggtgtattgattatgcatatggatttagcttgttgcatgaatttgaagcttaaaatctttatttatcaattaataagatgtatgtatagaaatattctctttgctgatatttgtagtttgcttaggccttttaggatctaatatctatattgattatatgtcttgtgctgtaacaaaacatgcgtatgagtatgttgcacttacatctagtctctatctgaaccatgtccaccctagctcaaacttcaaagtaacaaatactgcttttgcttcattttattagatggggagattttagcaacagctgctggccagttgaggacctttgatgcttctgataacaagaagattcaaaaattctctggccatccagtgagtgtctttgcttcctcgtcctttaagtgtgttctacttctgagattgtttatctttctgctcgtattattttgtcctaaaatgctaaccttctgctattggctaccctaaaattaacatttttaggtagctgtgaggagcatggtttttagtggtgatagccaatatgttctgtcatctggagttggggaacgctatgttgccatttggaagttgggtagtggtaaaactcagagttcaagctgtatactctctatggagcatccagcgatctttgtggactgtaaatgttcagacattaatgatacagaaggagaaatacatgtgttggctatttctgagattggtgtctgctacttttggtctgggactaatatggatgacctgcgtaataagaagcccactaaaattgcattgtctgattcctctctttcaagatctaagcaaggttttgcaatatttgccgcaaaactgcaaggaatagatggccctaattctgcacatgttctgctggcttatggatctgtggtgaaaccgtcttttgacaaactgttggttcgttatggcatggatattagtttgggtgtatctgatgatggagttctcttacccatgattcaacccacaaagcctcagaaaggccaatctgctaaaaagcaaggtatactgctggtatctatagatatacacataatcctgcacttctgtttggtcccttgcctccattgcagaacgctcaactattgtcaatggttactcttgggctaaatctcaattgttttcttgtaggaattataacggctctagaccgtgctaatgcagaagatgcaatccttcctctcccacagctccatacgcaggaaaagaaaaggaaacataatgcaacagaatccagtggtgacatccagtctgcacctcatagtgaccttagttctacaaaattgattgagaaaagaggtaaatcatctgtttgtagcatcttcagtagtcataattcttttgttctcatggcagtgtagatacgaactggtacataactggcacagttagctagtggaagtgtggaaccacataagtttgtatagtacatatatgtgtgcttccgcatgtttgggcaaacttcaaataaatatactataacatcttataagttacaaatgaaaattattattataatccattctaataattatatacatgagtgcatgagatcaatctacctagcctacgaatacgcatgcaaaataacctggtcttttacaaaagatccttcaaacaacaaacatgttttcgggagtggggaaatgggtgtagagcacacccatttgcctccaactccatctcaaaggaagataagtgacgttatgtgtccatatgatctttctctagagacttttaactctgtgggagcaatttattgcaggggcctatacccttgtggttttcatggcaagaatgtaacaactgctatgagcaataattctagtctctcagttgttataggttttactatagttttaacattaaacacaaattttgttatatttaacatgtatttctgttaaattgatcttcactatttgctcaaaaacccttttgcttgtctagctcctatgcaaagaattgaagatgacagtgtatgcatcgaagacatgatgcggaagtgtggagttattgattctagagttgatcagggcatggaaggtcatcctagcatacccactagtattttatctgatctatttggcagcagcagtaaaatcgatgctaatttacccaacaagaaggtttgtgagaactgaatttcagtcaaatgttctgtacttccaccatataactgtttgcatgtttacacattacagtatatatacaactgatgaaacctgatgcattgatatggttcaacagattcgagcacatctaagatccttgaagcctggagatgcttgcgaacttttagaaaaattagtatcttcatggaaaacaaggtgtccatgactcttttcccatgtttgttcccccacaacgcattttcattcgtttttatccttgtatgcttaccaattgctgatttattctctacagatctggtagtgcagaggttgttttgcggtggatatactgcttattaattatccatggtcgttttatcccctttgagaaatctaaaaaaataattagcgaccttgagaaggtattatatgtgttaccagtactatctcttgtgtgctatgcagattatttgaaacatgttactgttgtggttgtcatcatgctgtgttgtagtggagttggggggttaagctattagcaactattgccttaaatgactgcagaatgtggataacatattctgattctaatttaaagaccaccaatgcaggcagggtatttcagaatatagtttcgtgacctatttttctgataaaagtacaagtaacaatgatggcaagaactcacctttgatgagaacttgccaagtcacaatctgagccatttgatccactctagtggatgctaatgtagttgttttcccatgagagttctcaagtcgtcattgaacaatggattcccattttagatatctcctgacaactcaaacaatgttgtattgacacttcataacatcaattaaaaagtcatgtgcagtattgagcaaagcacatagaaagttaaagaaataagcatgctgtgtatctagattgggaagatgtcatgctatgcagtgctagtaaattatagatatctttattttatgtaccatgactgatttgatcaagttgcccccaccaatgctggccaatttctgttatgtcaaatctggggttgtcaatttggctgcccaaacttataataaatttactaaagtatattgcatgcccagtatttacaaatgaaacacttcccaatttcaacaacatggtcagattttgatcaatattacttggaaaaaaactgagactataactgtgtgtttactacgtcaagaaaaagaactgaaaattcaaaggtcgaactgaaccaccgcaactatgagcttaccatgtcttaccatgtcgaacatacaaaacaaaaaattgaaatgaaccattacagctatgtgtttttcttcttttttcttcttcggggaattgcaactatgagtttaccatgcgaaacaaacaaaaccaaagttgaagagattgaaagaaaccatttttcgtttgcagatgtgtggggaaagatacaaagcagctgaagatttactgaagctttctggtcgtcttcgattgctcatggctcaggttttaaccattaataatactgcgtaatgagtcaatattcttagtgtataagttaatgatgatttaatgatcatgtgcgtacttcacttttgtagatcgtcaaggatccaaacgatgtttctgagcttccatcagaggagatgcaggattcagcggctgctcagtctgatgaagaggaggaagatgatgaaattgatgaaacggtgtatggtgaagacgctgattcgtctcaaacaagtgatgacgacgctgaatagaaacactgagactaagcgtagcattcttatgatgtgttgttttatattcaaacttgattaccccgtagtcaggtttgtatgactaagcaaccccgaagggttgcgcagaattttgacgaggcgaagcatcctctgaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0300300, RefSeq:Os03g0300300