Os03g0309200

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Revision as of 12:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0309200| Description = Similar to Phytochrome B| Version = NM_001056445.2 GI:297600819 GeneID:4332623| Length = 7990 bp| Definition = Oryz...")
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Gene Name

Os03g0309200

Description

Similar to Phytochrome B

Version

NM_001056445.2 GI:297600819 GeneID:4332623

Length

7990 bp

Definition

Oryza sativa Japonica Group Os03g0309200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:11070815..11078804

Sequence Coding Region

11070927..11070960,11071182..11073185,11073584..11074391,11075509..11075802,11078140..11078362

Expression

GEO Profiles:Os03g0309200

Genome Context

<gbrowseImage1> name=NC_008396:11070815..11078804 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:11070815..11078804 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggtgaggtgaggcgaggaaaaaatcggacgcacccgcagtacaccctggacgcgcgcctccacgccgtgttcgagcagtcgggcgcgtcgggccgcagcttcgactacacgcagtcgctgcgtgcgtcgcccaccccgtcctccgagcagcagatcgccgcctacctctcccgcatccagcgcggcgggcacatacagcccttcggctgcacgctcgccgtcgccgacgactcctccttccgcctcctcgcctactccgagaacaccgccgacctgctcgacctgtcgccccaccactccgtcccctcgctcgactcctccgcggtgcctccccccgtctcgctcggcgcagacgcgcgcctccttttcgccccctcgtccgccgtcctcctcgagcgcgccttcgccgcgcgcgagatctcgctgctcaacccgctctggatccactccagggtctcctctaaacccttctacgccatcctccaccgcatcgatgtcggcgtcgtcatcgacctcgagcccgcccgcaccgaggatcctgcactctccatcgctggcgcagtccagtctcagaagctcgcggtccgtgccatctcccgcctccaggcgcttcccggcggtgacgtcaagctcctttgcgacaccgttgttgagtatgttagagagctcacaggttatgaccgcgttatggtgtacaggttccatgaggatgagcatggagaagtcgttgccgagagccggcgcaataaccttgagccctacatcgggttgcattatcctgctacagatatcccacaggcatcacgcttcctgttccggcagaaccgtgtgcggatgattgctgattgccatgctgcgccggtgagggtcatccaggatcctgcactaacacagccgctgtgcttggttgggtccacgctgcgttcgccgcatggttgccatgcgcagtatatggcgaacatgggttccattgcatctcttgttatggcagtgatcattagtagtggtggggatgatgatcataacatttcacggggcagcatcccgtcggcgatgaagttgtgggggttggtagtatgccaccacacatctccacggtgcatccctttcccactacggtatgcatgcgagttcctcatgcaagcctttgggttgcagctcaacatggagttgcagcttgcacaccaactgtcagagaaacacattctgcggacgcagacactgctgtgtgatatgctactccgggattcaccaactggcattgtcacacaaagccccagcatcatggaccttgtgaagtgtgatggtgctgctctgtattaccatgggaagtactaccctcttggtgtcactcccacagaagttcagattaaggacatcatcgagtggttgactatgtgccatggagactccacagggctcagcacagatagccttgctgatgcaggctaccctggtgctgctgcactaggagatgcagtgagtggaatggcggtagcatatatcacgccaagtgattatttgttttggttccggtcacacacagctaaggagataaagtggggtggtgcaaagcatcatccagaggataaggatgatggacaacgaatgcatccacgatcatcgttcaaggcatttcttgaagttgtgaagagtaggagcttaccatgggagaatgcggagatggatgcaatacattccttgcagctcatattgcgggactctttcagagattctgcagagggcacaagtaactcaaaagccatagtgaatggccaggttcagcttggggagctagaattacggggaatagatgagcttagctcggtagcaagggagatggttcggttgatcgagacagcaacagtacccatctttgcagtagatactgatggatgtataaatggttggaatgcaaaggttgctgagctgacaggcctctctgttgaggaagcaatgggcaaatcattggtaaatgatctcatcttcaaggaatctgaggaaacagtaaacaagctactctcacgagctttaagaggtgatgaagacaaaaatgtagagataaagttgaagacattcgggccagaacaatctaaaggaccaatattcgttattgtgaatgcttgttctagcagggattacactaaaaatattgttggtgtttgttttgttggccaagatgtcacaggacaaaaggtggtcatggataaatttatcaacatacaaggggattacaaggctatcgtacacaaccctaatcctctcatacccccaatatttgcttcagatgagaatacttgttgttcggagtggaacacagcaatggaaaaactcacaggatggtcaagaggggaagttgttggtaagcttctggtcggtgaggtctttggtaattgttgtcgactcaagggcccagatgcattaacgaaattcatgattgtcctacacaacgctataggaggacaggattgtgaaaagttccccttttcattttttgacaagaatgggaaatacgtgcaggccttattgactgcaaacacgaggagcagaatggatggtgaggccataggagccttctgtttcttgcagattgcaagtcctgaattacagcaagcctttgagattcagagacaccatgaaaagaagtgttatgcaaggatgaaggaattggcttacatttaccaggaaataaagaatcctctcaacggtatccgatttacaaactcgttattggagatgactgatctaaaggatgaccagaggcagtttcttgaaaccagcactgcttgtgagaaacagatgtccaaaattgttaaggatgctagcctccaaagtattgaggatggctctttggtgcttgagaaaggtgaattttcactaggtagtgttatgaatgctgttgtcagccaagtgatgatacagttgagagaaagagatttacaacttattcgagatatccctgatgaaattaaagaagcctcagcatatggtgaccaatatagaattcaacaagttttatgtgactttttgctaagcatggtgaggtttgctccagctgaaaatggctgggtggagatacaggtcagaccaaatataaaacaaaattctgatggaacagacacaatgcttttcctcttcaggtttgcctgtcctggcgaaggccttcccccagagattgttcaagacatgtttagtaactcccgctggacaacccaagagggtattggcctaagcatatgcaggaagatcctaaaattgatgggtggcgaggtccaatatataagggagtcggagcggagtttcttccatatcgtacttgagctgccccagcctcagcaagcagcaagtagggggacaagctga</cdnaseq>

Protein Sequence

<aaseq>GEVRRGKNRTHPQYTLDARLHAVFEQSGASGRSFDYTQSLRASP TPSSEQQIAAYLSRIQRGGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVP SLDSSAVPPPVSLGADARLLFAPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAI LHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVE YVRELTGYDRVMVYRFHEDEHGEVVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNR VRMIADCHAAPVRVIQDPALTQPLCLVGSTLRSPHGCHAQYMANMGSIASLVMAVIIS SGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQ LAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYHGKYYPLGV TPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAAALGDAVSGMAVAYITPSDYL FWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIH SLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSSVAREMVRLIETATVP IFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEETVNKLLSRALRGDE DKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVTGQKVVMDKFIN IQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVGKLLVGEVFGN CCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTRSRMDGEAI GAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTNSLLEMT DLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVVSQVM IQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQVRP NIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKILKLMG GEVQYIRESERSFFHIVLELPQPQQAASRGTS</aaseq>

Gene Sequence

<dnaseqindica>113..146#368..2371#2770..3577#4695..4988#7326..7548#gcaatcccactctcatctccctcagttactgccttgctccccaaccccaggagcaagcacaagtccactgcgtgcgtgcgagcgatgactccgataaccgcaggggcggtgaggtgaggtgaggcgaggaaaaaatcggacgcacccgcctaatccggaccaatccaccgcatcggcgccatggcctcgggtagccgcgccacgcccacgcgctccccctcctccgcgcggcccgcggcgccgcggcaccagcaccaccactcgcagtcctcgggcgggagcacgtcccgcgcgggagggggtggcgggggcgggggagggggagggggcggcgcggccgccgcggagtcggtgtccaaggccgtggcgcagtacaccctggacgcgcgcctccacgccgtgttcgagcagtcgggcgcgtcgggccgcagcttcgactacacgcagtcgctgcgtgcgtcgcccaccccgtcctccgagcagcagatcgccgcctacctctcccgcatccagcgcggcgggcacatacagcccttcggctgcacgctcgccgtcgccgacgactcctccttccgcctcctcgcctactccgagaacaccgccgacctgctcgacctgtcgccccaccactccgtcccctcgctcgactcctccgcggtgcctccccccgtctcgctcggcgcagacgcgcgcctccttttcgccccctcgtccgccgtcctcctcgagcgcgccttcgccgcgcgcgagatctcgctgctcaacccgctctggatccactccagggtctcctctaaacccttctacgccatcctccaccgcatcgatgtcggcgtcgtcatcgacctcgagcccgcccgcaccgaggatcctgcactctccatcgctggcgcagtccagtctcagaagctcgcggtccgtgccatctcccgcctccaggcgcttcccggcggtgacgtcaagctcctttgcgacaccgttgttgagtatgttagagagctcacaggttatgaccgcgttatggtgtacaggttccatgaggatgagcatggagaagtcgttgccgagagccggcgcaataaccttgagccctacatcgggttgcattatcctgctacagatatcccacaggcatcacgcttcctgttccggcagaaccgtgtgcggatgattgctgattgccatgctgcgccggtgagggtcatccaggatcctgcactaacacagccgctgtgcttggttgggtccacgctgcgttcgccgcatggttgccatgcgcagtatatggcgaacatgggttccattgcatctcttgttatggcagtgatcattagtagtggtggggatgatgatcataacatttcacggggcagcatcccgtcggcgatgaagttgtgggggttggtagtatgccaccacacatctccacggtgcatccctttcccactacggtatgcatgcgagttcctcatgcaagcctttgggttgcagctcaacatggagttgcagcttgcacaccaactgtcagagaaacacattctgcggacgcagacactgctgtgtgatatgctactccgggattcaccaactggcattgtcacacaaagccccagcatcatggaccttgtgaagtgtgatggtgctgctctgtattaccatgggaagtactaccctcttggtgtcactcccacagaagttcagattaaggacatcatcgagtggttgactatgtgccatggagactccacagggctcagcacagatagccttgctgatgcaggctaccctggtgctgctgcactaggagatgcagtgagtggaatggcggtagcatatatcacgccaagtgattatttgttttggttccggtcacacacagctaaggagataaagtggggtggtgcaaagcatcatccagaggataaggatgatggacaacgaatgcatccacgatcatcgttcaaggcatttcttgaagttgtgaagagtaggagcttaccatgggagaatgcggagatggatgcaatacattccttgcagctcatattgcgggactctttcagagattctgcagagggcacaagtaactcaaaagccatagtgaatggccaggttcagcttggggagctagaattacggggaatagatgagcttagctcggtagcaagggagatggttcggttgatcgagacagcaacagtacccatctttgcagtagatactgatggatgtataaatggttggaatgcaaaggttgctgagctgacaggcctctctgttgaggaagcaatgggcaaatcattggtaaatgatctcatcttcaaggaatctgaggaaacagtaaacaagctactctcacgagctttaagaggtacctctcttgtcatgctaattggttgttcttgcctttcatgttttcttttgcgaatatacacaatactgtttactcgatattctttaattacttggatccctaacctgtaatgctaatttggttcctcttgcctttcatgtttcatatggatagtgcacacaatactgtttactcgatattctttaatgacttgacatttagacacatttgataatttacaacagtgcccaaaactgacaaagtatattgagctcattcagtaggtacatgtaaggctggaatactagttatattattctaaattacttattcaatacaccacagtgagtttatgttttcactaaggggaagtggtaggactgggttcatgatttgttaatttgttgctcatgcaggtgatgaagacaaaaatgtagagataaagttgaagacattcgggccagaacaatctaaaggaccaatattcgttattgtgaatgcttgttctagcagggattacactaaaaatattgttggtgtttgttttgttggccaagatgtcacaggacaaaaggtggtcatggataaatttatcaacatacaaggggattacaaggctatcgtacacaaccctaatcctctcatacccccaatatttgcttcagatgagaatacttgttgttcggagtggaacacagcaatggaaaaactcacaggatggtcaagaggggaagttgttggtaagcttctggtcggtgaggtctttggtaattgttgtcgactcaagggcccagatgcattaacgaaattcatgattgtcctacacaacgctataggaggacaggattgtgaaaagttccccttttcattttttgacaagaatgggaaatacgtgcaggccttattgactgcaaacacgaggagcagaatggatggtgaggccataggagccttctgtttcttgcagattgcaagtcctgaattacagcaagcctttgagattcagagacaccatgaaaagaagtgttatgcaaggatgaaggaattggcttacatttaccaggaaataaagaatcctctcaacggtatccgatttacaaactcgttattggagatgactgatctaaaggatgaccagaggcagtttcttgaaaccagcactgcttgtgagaaacagatgtccaaaattgttaaggatgctagcctccaaagtattgaggatgggttagtattctgaacttacctttttctttaactttaatgaatactgatccacactaatgtctctgtgtttgggataacatctgagaatggcatatgatatcccgttgtgctcttgaaaaaatgtatgttttgtgatcctctcctttctttaccttgtgctaagactaggtgttgtttggtgtttcagttggcactaaccgttaacctaagcatggatggaaaataaggaattagagaagtccgtcagactgacagctctggttcactgtattcatttatctgaaaagttctcttgccatgtaaattttatccttttttagattaatgcctgtattctgtgcatgtgggccttttatgggaatttagtttactgtcagaacccttcttgtcattgcagaaatgaactaaaactagttgcccaagtgtagatatcaagcataaaattcatgctaatatctatattgctagtatcctaagtacattgccgtcctcaacagcttaaccttttggccaaaatggttgttgcatgaaagtcgacatcaagcagcttactctaaaaatgccattgccaccctttactcttgtttcataaatatggtaactatttcttgtaaatgctgctgtacactttacttgtttgaaattttggagatcattctggtttccttgcatcacttgatcaattcctctcagctgcatttattgacaatgaatgtgcaatgcttttatcctgaggaagtcactactccctctggttccataattcttggtgttttggacaatgacacggtctccgaaatatatctttgagtatatttttctattataatacttcctccgtcccaaattaagttaatatagtacgggatgtgacatatcctagtagtaccaaagtccaagcatagcctaatctagcatagttccaaataggaactcatggctctgtgatgtatttttcttgtgtcatttacttggtgtaatttcattctaggtagaagcattgtgtgactttttcgtgtgctgagacatttgaactcactgctaaatttgacgccttattagtattttaacaaatgattagctgaaagcttatttgttttttgtgtttattaagcagctctttggtgcttgagaaaggtgaattttcactaggtagtgttatgaatgctgttgtcagccaagtgatgatacagttgagagaaagagatttacaacttattcgagatatccctgatgaaattaaagaagcctcagcatatggtgaccaatatagaattcaacaagttttatgtgactttttgctaagcatggtgaggtttgctccagctgaaaatggctgggtggagatacaggtcagaccaaatataaaacaaaattctgatggaacagacacaatgcttttcctcttcaggttagctatttatcttcattttcaataccagaaggcaatacatattctcacgcaggaatttcttgtgttgaatttggtagaggacaagttaaatatttggttaaatttatattcgttggtcatatttgctgtagcactctaggtaatatttgtgtttatcctgaactattgatgctctacctacagacactacaaaaaatagattatcctaaataagatctcctacatatcaaacatatgtattatccctgtacatatctgatagactgaagaccccacctatttaagtataaatatatgcaaaatatatgtgtcatgggttggctggtcactctctttgagtaaatttggaagataataaaatacacttggtttattttctttgagtaagtgacataaaacgctaggttttggggccttagtaacacaaacccccaagttttgcaatttgtgtcaaagaacccaaggctttgaggcaaaatgctttataaagccctagatttatatacaaaacacttacacgccattataatgaaccaaatttcaactgtatacttacatagatacgcattcctaatcctaccgtgtagtctatttccttccccactctcctactgaatgaatacacaatggcaaactccagttacaaagaccagggccgtctccaggatatgggggccccagaacaaaatgcaaattgagaccctaaatttttaaaaaataatgtgtcattttcagttattatataactttaatatgtgttatttcgtatgatatttagtacttcctccgtttcaggttataagactttctagcattgcccacattcataaatatgttaatgaatctagacatatatatatgtcaagattcattaacatatatatgaatatgggcaatgctagaaagtcttataacctaaaacggaggtagtaatatattttcaaatattaatggtacaagagtaaaggtagtactaaccttatgttccagtgtaaagcatcatctgctgaggatttgaggacttcctgttttataaaaagggagaagacgttcacattacttttgattcgataattatcaatccaatggaatgatggatcattcaaaatactgtaacagtgtaacttcattagccttgattcaaattagtaatcagtaaattatcgattccgagtaccaactagagctaggcctcgcagcctcgtcgccgctcgccgttcccattgctccgcttggcaacatcggcgttgtgctgcctgctgccgtgaggcgtaatgctgtcgctgccgcctgctgtgctgcacacacgcagcaagtcgcgtctctccacgagtgaacactaaaaagtaaacagttaagacggagcgacatatgtcttccgcctgggcacctagcgtagctcctgatctagggccaggctgcaggcctactccgaggcgggggcccccaaaaatagggggccttgtgcggccgccgtgctcgcacatggccttagacggccctgacaaagacatgttaactgggtacataaatgcacaaacagtcatgccgtcaacatcgatacttgtcgagtaggcggctaatgcacaaacagtcaaggtactactgaaaaaactaccacatactattttgtacagctattatgcataaattccatagctagctggttgatgttgacacaaaatggggttctgtgaaacatttgggcccaaaacctgggttagttgaaataaattgcaaaatctgggttcttatgttactagtaccacactaccactaaaactgcagatttatgaaatctaccttatgtataattaagcctcctaggctcttaggaactgctgctaacaaaatagtagagatatgataggattttgacaataggtaacaaatactaagaacaaggaaactagagatggtatgatcaattaaacttggtccttatctgttgaagatggtgttggaactttatcttagtgatgccagctaggaagccctcatacctgctgctaggtgctacagtacgctactgttcaccggtgtccatggctagcacaccctcatggttccccccccctccaaaaaaaaaaaagattagttattacagcatgtaccttcgttgtaatggtgttgtaaataataaaatatcaacaattatttcttggtgttggagtattaaacgtgtgacactggtcaccaaggtgaatgatgcttaaaatttggaattttttaattgtctgcactagttcgtgttgttacttatagtatagagaacctaatgactcggcagggaggaccacaaactgatcgcttaccatctatctggttctgcaggtttgcctgtcctggcgaaggccttcccccagagattgttcaagacatgtttagtaactcccgctggacaacccaagagggtattggcctaagcatatgcaggaagatcctaaaattgatgggtggcgaggtccaatatataagggagtcggagcggagtttcttccatatcgtacttgagctgccccagcctcagcaagcagcaagtagggggacaagctgatatggtgtatgctcgtcgctaacctcgcataactattcggtcaaccaggtgacctgggatcttctgatggagaacccagtttatgagagttccagaaaccaacatttcgtccactctgatgaagcacatctgaactttggaacggcatcggtgattctcggtgtcgaggtggtccctccagtctcctgattcctggcatgcccgactgtaagttcagctttggacgatgttgttctattagagttctatggcggcaagcaatgcacactgacggtcatgtaactcgtagcataggcccactaccacttggttgaagtacatatatgttctaaaagctgccatgtatataacatcggttatatatgtactacgtgcataaggagagctgtgcagctcccagggtggtattttgtagggcttcccaagcctatgacatcttatt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0309200, RefSeq:Os03g0309200