Os03g0314200

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Revision as of 12:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0314200| Description = Cas1p-like family protein| Version = NM_001056467.1 GI:115452662 GeneID:4332646| Length = 5219 bp| Definition = Ory...")
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Gene Name

Os03g0314200

Description

Cas1p-like family protein

Version

NM_001056467.1 GI:115452662 GeneID:4332646

Length

5219 bp

Definition

Oryza sativa Japonica Group Os03g0314200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:11292925..11298143

Sequence Coding Region

11293315..11293473,11293552..11293648,11293749..11293805,11293911..11293973,11294066..11294154
,11294238..11294324,11294595..11294710,11294801..11295056,11295136..11295285
,11295723..11295881,11296081..11296153,11296231..11296287,11296382..11296516
,11296747..11296838,11297960..11298028

Expression

GEO Profiles:Os03g0314200

Genome Context

<gbrowseImage1> name=NC_008396:11292925..11298143 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:11292925..11298143 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggcgatcgcgtccgcgggtgggatcgccatggccgcctcgacctccctcacgccgggccaggtctctgctcttctgggatttctttgggttttcaccgcctgggcatatgcggaggttctctattataggaagaatgctgcttctattaaagcacactcggatgtaaatttagcagtaatggattctagctcaaacaaaggagaggatcaagtgatgttattggaggagggtgtccaagcaccagtgcaaaagccagtttatgcttctctcacatcacaaatgttcagacttttcttgttggaccaggcacttattctagagaatcgattgacgttgagagcaatatctgagtttggaggtcatctgctttacttttacatatgtgatcgcacaaatctactgggagagtctgcgaagaattacagccgagatatgttccttttcctttactttcttcttattatcgtagcagctatgacttctttcaaggtccaccaagacaagtcgtcattcacggggaaatctatactgtatctgaataggcaccaaactgaggaatggaagggttggatgcaggtgctgtttttgatgtaccactacttcaatgctaaagagatatacaatgcaattcgtgtgttcattgctgcatatgtctggatgactggatttggtaacttctcctattattatgtgcggaaggatttcagccttgcacgatttgctcagatgatgtggcgcctcaattttttcgtggcattctgttgtattgtgctaaataatgactacaccctctattatatttgccctatgcacacactttttacccttatggtttatggtgctcttggaatactaaataagtataacgagattggatcagtgatggctataaagtttgttgcctgctttttggtggttatcctgatatgggaaatcccaggagtcttcgagattgtctggagcccattcacgtttcttctcggctatactgatccatctaaacctgatctccctcgattgcatgagtggcatttccgatctggactggatcgctacatatggattgtggggatgatttatgcttattaccatccaactgttgagaagtggatggagaagcttgaagaagctgaaacgaaaactaaactctatattaaggccttgatagtttcaattgctttaacggctggttgtttgtggtacgagtacatttataagctagacaagattacctacaacaaataccatccctatacatcctggatccccataactgtgtacatctgcttacgcaacttcactcaagaattccggtgctgctctctcacactatttgcctggctcggaaagattaccttagaaacgtacatatcacagttccatatttggctcagatcaaaagtgcccaatgggcaacctaaatggctattgacaataatcccaaattacccaatgctgaatttcatgctcacaactgctatatatgttgcagtctcccataggctatttgagttgactaacaccttgaagatcgcatttgtgcctagtcgtgacaacaagcgcctctcgtacaattttgtggcgggaattgcaatttcagtggcgctatattctttatcatttcttatagttggcgttgcaggatactag</cdnaseq>

Protein Sequence

<aaseq>MAEAIASAGGIAMAASTSLTPGQVSALLGFLWVFTAWAYAEVLY YRKNAASIKAHSDVNLAVMDSSSNKGEDQVMLLEEGVQAPVQKPVYASLTSQMFRLFL LDQALILENRLTLRAISEFGGHLLYFYICDRTNLLGESAKNYSRDMFLFLYFLLIIVA AMTSFKVHQDKSSFTGKSILYLNRHQTEEWKGWMQVLFLMYHYFNAKEIYNAIRVFIA AYVWMTGFGNFSYYYVRKDFSLARFAQMMWRLNFFVAFCCIVLNNDYTLYYICPMHTL FTLMVYGALGILNKYNEIGSVMAIKFVACFLVVILIWEIPGVFEIVWSPFTFLLGYTD PSKPDLPRLHEWHFRSGLDRYIWIVGMIYAYYHPTVEKWMEKLEEAETKTKLYIKALI VSIALTAGCLWYEYIYKLDKITYNKYHPYTSWIPITVYICLRNFTQEFRCCSLTLFAW LGKITLETYISQFHIWLRSKVPNGQPKWLLTIIPNYPMLNFMLTTAIYVAVSHRLFEL TNTLKIAFVPSRDNKRLSYNFVAGIAISVALYSLSFLIVGVAGY</aaseq>

Gene Sequence

<dnaseqindica>4671..4829#4496..4592#4339..4395#4171..4233#3990..4078#3820..3906#3434..3549#3088..3343#2859..3008#2263..2421#1991..2063#1857..1913#1628..1762#1306..1397#116..184#acctaattttcttcgtcctctccctctcttcttctcttctcttctctgctcggctcctgtacgcggctggatccgagcggcgcaggaaggaggcggggcggatgctgtagagagaatggcggaggcgatcgcgtccgcgggtgggatcgccatggccgcctcgacctccctcacgccgggccaggtgagccctaaatcgcaccgtcgatccggggaggggggggctgctgctctgttgttggtgcgggtgcggggaccgcgcggcatttgctgccccctaggcgatttcgtcgggggaatccgcggttggcgaggtggctcaaggatttcgtcggggggaatgggaaggcatcgcccgtgtgccgggcgccgggcgcggccgcggccgcggaagtgcggcttgggttttgggtttaggtggctgggactgggaggaagcgcgctggagatgatggcatgcgcgtggaatctctggcgggagcttgtgttgctttaacgctgctgttggctaaattggcgggattgggtgatgatcggtgagatggttgtggatatcggttggttgtctggtttgcttttttgttgatacgacaagtattagtgctaggttttaggattcggtggtattcggataggaggctaactattttggctgatgcgggatttgaatttgtggctggtttcagggatgtggatcaaagggtgtaaatcatcaggtcatagctgtgcttttgtatggtaggctagtagcaccaaatatatggtggaggtttcattcatccgagctgttggaaaattggcgatataatagcttatatgtagggtttaaggttggaaattcgtaagtggctgcggtttcagatctggaggtattggatgttagagtaagaccgtcattaagatctggcagcatgggctattctgttatattttctaagagatggtagcagtatcgatgtgctgaccaacctgttagaattggtgtcaatctgcttgattttctagcgcacggttgttccttactttggtagttgttaggaagttcaggttggtaaaaatactaaaactagatagtaatttagttgcagaaatacatattggtgtggattgcaagaatccggactatgatgagctacttttaccccacaagttcaaataacacaattacagtgtttgattgcaacttgaaagccgtagaactattgtctactatacagatgactgagtgatattcttctaatagtaggattttgttttgggggtcctcaatcactggatctgagatagctggcaactttctgacaggtctctgctcttctgggatttctttgggttttcaccgcctgggcatatgcggaggttctctattataggaagaatgctgcttctattaaagcgtaagtaattgtgacagctatatttacagttctggtatccatgcattttaattttcgtatatgctaagtgatatactctcatgttgccactgagattgaaatatctacttatgttacaagaagcataactcaagagtcgtacttcgtctggactgaatgtgtgctgcaccattattttgcttgaaatgtaccacttattggaatttctgtttctttatctttgttagtagacactcggatgtaaatttagcagtaatggattctagctcaaacaaaggagaggatcaagtgatgttattggaggagggtgtccaagcaccagtgcaaaagccagtttatgcttctctcacatcacaaatgttcaggttgtttgtgatgtatgatttctccttcatgttgtatataaacgttgagatatcaacattactaaggcactgacaaagataatctgttgcacagacttttcttgttggaccaggcacttattctagagaatcgattgacgttgagagcaatgtaagctacagctgcatcttgcattcacgtgttcttctatgttgcattatttggctgagcagttattattttttcagatctgagtttggaggtcatctgctttacttttacatatgtgatcgcacaaatctactgggagagtctgcgaaggtgctattacattgatgtttattacaagcctgatttcacgtttgaaaagtagttgcaaaaatattgtatctagttgagatatcttttacgaatacattctaagccttactaatatttcatggaaagtgcctatataatgtgctgttctttcaatgggacattttttgttctgaccttttctgttatcctgtatctgcagaattacagccgagatatgttccttttcctttactttcttcttattatcgtagcagctatgacttctttcaaggtccaccaagacaagtcgtcattcacggggaaatctatactgtatctgaataggcaccaaactgaggaatggaagggttggatgcaggtatcttttttggggaaaaaaaactccgtcttccttttcatatatttatggggtatcttatactagttggcttctgtttgtgcataacactaatttatcataagtcagaactatgcaaagagggtataaatgcattcagtattaaacatcttttgtcatattgttggtttccgtttgtgcataatactaatttatcagaactcagaactcagaactatgcaaagaggatataaatgtgttcattattaaacatcttttgtcatattgttctacatgtatgcttacctagtcttcattaatgaacctctcttagttttagtaagttaattagtcaatgctcaatgcctcaatagcatacatgtgtggttagtaagtttttcatctatgttcaagtgcatgcatatcacttgttttcagcattgatttccctcattcaggtgctgtttttgatgtaccactacttcaatgctaaagagatatacaatgcaattcgtgtgttcattgctgcatatgtctggatgactggatttggtaacttctcctattattatgtgcggaaggatttcagccttgcacgatttgctcaggttcattcttagacccttcattccccttcattctttcttccataagtaggaccttcctgacatgttttcaccttgacagatgatgtggcgcctcaattttttcgtggcattctgttgtattgtgctaaataatgactacaccctctattatatttgccctatgcacacactttttacccttatggtttatggtgctcttggaatactaaataagtataacgagattggatcagtgatggctataaagtttgttgcctgctttttggtggttatcctgatatgggaaatcccaggagtcttcgagattgtctggagcccattcacgtttcttctcggtaagttttctctgtaaacttttagtgagtttgatagtttatatatatatttttagtaaggatgatcaatgtaatttaccttgtgtgcaggctatactgatccatctaaacctgatctccctcgattgcatgagtggcatttccgatctggactggatcgctacatatggattgtggggatgatttatgcttattaccatccaactgtatgtttcctgccaactgtgctatacttttacatagtgttcagttatagatgttctatttctttagttttatcaaatttcataaatcgcataaaagttgtttgtatgagtgcatgtctctgcgcgcctgcgcatatgcatgtgtgagagaaatgtgctgatataaattttctggttctttcagttttgagggtgttgagtcatttgtaaaattgtgggcatacgagagaatagtattttacatcaataaatcatttgtttgtgttgcaggttgagaagtggatggagaagcttgaagaagctgaaacgaaaactaaactctatattaaggccttgatagtttcaattgctttaacggtaattatcaaataactgaataagccacttattgttgcatatccatcttttggtaagaccaccttgctttactgtgatcacaggctggttgtttgtggtacgagtacatttataagctagacaagattacctacaacaaataccatccctatacatcctggatccccataacgtatgtattttttccatatcgattttttttataaaaaaaaatccttggtgtactgcaataactgattgctcaatgcttattgtactcaaaagtgtgtacatctgcttacgcaacttcactcaagaattccggtgctgctctctcacactatttgcgtaagttttgtgtttgtgaagcatgttccacttttatgttggactttatcttactgtaatgcgatattgtgaatatgcaattaatgtactcttcatctgtgctagctggctcggaaagattaccttagaaacgtacatatcacagttccatatttggctcaggtaaccagctgctgtctctacaatattacctccgtggttcgtgccactagaagttcctcttgttcttgtcaatgactgaaaattgtctttactcctgcagatcaaaagtgcccaatgggcaacctaaatggctattgacaataatcccaaattacccaatgctgaatttcatgctcacaactgctatatatgttgcagtaagtagatcttccctgtgactttgaagagtttagaccttacaggcaacctgcttatgttataacttattcctacaggtctcccataggctatttgagttgactaacaccttgaagatcgcatttgtgcctagtcgtgacaacaagcgcctctcgtacaattttgtggcgggaattgcaatttcagtggcgctatattctttatcatttcttatagttggcgttgcaggatactagcaagtcctatagttggccttatgtggcatctgcaaagctgatttgattaccttcacggcttggagacttccattgtttcaccctgagcttcgttttttatgagtgttacatggtgaaaaggagtcgggatgcagaacaaaaaatgatcagggagagtgtaacatgtagcattaaaccccaaatgggaatataatgaagtagatatatgcctgtatagccgttgaaaattgaaatgcatatgtaagcgagctcgttggctatagaaacttctctctcttggcctcttggcccgttgagattgagatttgaaataggatagtggaaacatgtaagaatattattcttttgacccttctcgaaataacgttgttagcttggtgcaagctgggt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0314200, RefSeq:Os03g0314200