Os03g0318600

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Revision as of 12:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0318600| Description = Similar to Transcription factor HBP-1b(C38) (Fragment)| Version = NM_001056480.1 GI:115452688 GeneID:4332660| Length...")
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Gene Name

Os03g0318600

Description

Similar to Transcription factor HBP-1b(C38) (Fragment)

Version

NM_001056480.1 GI:115452688 GeneID:4332660

Length

5022 bp

Definition

Oryza sativa Japonica Group Os03g0318600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:11526895..11531916

Sequence Coding Region

11527145..11527291,11527557..11527802,11527947..11528218,11528319..11528370,11528475..11528552
,11529635..11529694,11529781..11529861,11530893..11530958

Expression

GEO Profiles:Os03g0318600

Genome Context

<gbrowseImage1> name=NC_008396:11526895..11531916 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:11526895..11531916 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcagatgctagttcgaggactgacacatcaacagtcctggataccgacgataagaatcagatggtagacgggcaaagtggagctattgtgccttctaattcatctgatcggtctgacagatctgacaagcccatggaccaaaaggtgttacgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatatgtacaacaattagagagcagtaagctgaaacttgcaagcttggagcaagagatcaataaagctcgccaacaaggaatttacatttcgagctcaggagaccaaactcatgctatgagtggaaatggagctatgacttttgatttagaatatgcccgttggttggaggaacaaaacaagcagataaatgagctgaggactgcagtaaatgctcatgcaagtgacagcgacctccgtctcattgtagatgggataatggcgcattacgatgagatattcaggctgaagggtgttgccgcaaaggctgatgtgtttcatatactttcaggcatgtggaaaacacctgctgaaaggtgcttcttgtggcttgggggttttcgttcctctgagcttctaaagcttcttgtgaatcagctcgagccattaactgagcagcagttgttgggactatcgaacctccaacagtcctctcagcaggctgaagatgctctatcacagggaatggaagcgttgcaacaatccttggcagatacgttggccgggtcccttggtccatcaggatcttcagggaacgtggcaaactacatgggtcaaatggctatggccatgggcaaacttgggacccttgagaatttcctccgtcaggctgacaatttgcggcagcagactttacatcaaatgcagcgaattctgacaatccgacaagctgcccgtgctctacttgcaatacatgattacttctcacgtttgcgtgccctgagttctctctggcttgctaggccacgggagtaa</cdnaseq>

Protein Sequence

<aaseq>MADASSRTDTSTVLDTDDKNQMVDGQSGAIVPSNSSDRSDRSDK PMDQKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQEINKARQQGIYISSS GDQTHAMSGNGAMTFDLEYARWLEEQNKQINELRTAVNAHASDSDLRLIVDGIMAHYD EIFRLKGVAAKADVFHILSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLL GLSNLQQSSQQAEDALSQGMEALQQSLADTLAGSLGPSGSSGNVANYMGQMAMAMGKL GTLENFLRQADNLRQQTLHQMQRILTIRQAARALLAIHDYFSRLRALSSLWLARPRE</aaseq>

Gene Sequence

<dnaseqindica>4626..4772#4115..4360#3699..3970#3547..3598#3365..3442#2223..2282#2056..2136#959..1024#tcgcctcgcctctctctcttccttctgaccaacccgacctcggcgcctccccccatttctctctctctctcttcgcgttgccgtctcgaccccgcctccaccgccgaagccgcccgaggcggcggccgccggcagctgggctcctccgaatccgaacacggcgggggctctcccctcgctccccacggcggttggcacctgctggctctcggtaagacctagttcccgctgatgagttagttgcttggagctagctagcgcggtctgcccgatcgattccgtccaattcccgcgcgcgtggtttgattgctcgcgaattcgatgtccgtagggcttgttttgatctcgcgctgtcgttgtagacgcctttggcttggggaggttggccgcgcggctgctttccgtagaagcttcgcaagctgttgtgtgagctacaccagctgggaggaggaggaggagggtagccctgagcttaggaactgacgctacgagctcggagatagctgtacttttttctttttttggttttgccttaaatcctctctcgtccttacttgtgtcgccctgtacttgggtagctgttgccgtcggaattattatctgctatatactgtttttaaggaaggtgctgtttggcatgctgcttgattttaattatttgatgaaccctggctgaatactatcatttgtttgattctttcgcagatccaacgtgtacagctaatttgatctgttggcgccttagctagaagtaaggatacggctgtattagttgggatattggttttgtcattgctggatgcacagccttttacggtgcgtttgctttgatgtagaggtggcgactctggcatctcagtgatcatagggcatttgaaggtggcctgcatccctgttacaagtaagggacaacaaagcaatttgttgtctctttatttggagctgggaagaacccggcatggcagatgctagttcgaggactgacacatcaacagtcctggataccgacgataagaatcagatggtaacttctcttttctctgtcactctgtttatgctcctggtgattgatcatttatgcaagctaggtacaaaagccaaaacaacataggcactgtatctagctgactgatagtctaataataggtcatggatagcaccataggtgcatatgatgagttgaacttcagttctatgataggattacttttattacaagatacaaagttctttttctatggttatttgaccctctcaagatgattgtacaaaaggaaacagtacagaaaatttattatgaacctctaaagttaacaggacaactactgttggacaatcagtaactactaatctggagtgccttgaaatgttatgtccatgcagcacctggttattctaaaatatttttatcaaataaaaggatgatacatgatttggtgctaaactgcctgggagtttcagaacttttgttgacatgtaacatgggttgacactaggcacatcattttgatatcaattttgtgaagaatttgattgttaaggtaaaaacttttaaaaagttgactttctaactatagaggcatcaggtactataaccaataatctactttggttactactacttccattaaactggccaactgtccatgccaatttctctgatttatacaaaaattatcccactttaatggagaaggcttgtcctattcagttgaaattggttgagcacctatgagtgatggttattgaattttgttatcttggttttgtgtgaggtgctattttggatgttttctatttaggtgtgacaagtacatggaaaaattccatctttgtaattttatagatgaacaaacatttattaaatttcacatgtaaagagttttatttttcgtatgtcctgctgaaatgcctataaatttcttgagtcgcctaaacaattatcagatatcatcaatccagcttctgtgtactgctactctaaagttctcattacactgcatgtgtgatacactgagatgtttgttctaattttgtcctaacaaatctttgcaggtagacgggcaaagtggagctattgtgccttctaattcatctgatcggtctgacagatctgacaagcccatggaccaaaaggtgttaatttatctcctatttcttgtgcagtgctacttatcctttcttaatgatggtatttaggaagtatgtttgttattctgtaggtgttacgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggtactataaccacaactttttgtcatattacctgtccttttttggacaatggaattatgacttctggtctccgcaccaactaaggatgcacatccatattatctctgtctaatgtctatgtgtgtgcatgcgagtatttttttttttgccttaaatttatttaggtgactttgggttgtttaatcagggaactgtaattgtatgatggtgcagttatgtgaaaatgccatggatgagcttatgggtgcacccgacggagagtcatgggtgtacagatgcacacccaactctactttttggttgcaaaatggtcattatatagcaggctagcagggatatttatattgtatgctaatagctattgaaaatactccatattcatgaccccaaataattttccttttcttttgggatgccggctctagtaggaatagtttctagaccttgattactcttctactctgtacaagtgtacagctgtcttagatatcgtgggtccaccactgggtgagttggtggatggctattatgcatatgcatgcttaagtaagcaactagctgacaatcatgttttcagtagcaatttagataagtccatgtttgtaattttgtaaatcagggagctaatactggtgcaactaatgggttggcctacaaatatgttttatttagcacttaaactgcctctttttttaatcgttttatgatattatgggaattacaaaagaattccagaaggtacttcccttccaagaaataactaacctgcaagggtctttgttttctttgatgtctttcttgttgaatgttctgggcattgaattactatgggctaactgggccaacaggtatacaagggtaactatacagatatgtagaaaacaccctctagaatagagtaaatacacaggtagctatgcagtacatgtaacatctataaccttgagaacttacattctaggcataagcaattgaatttcatgaattgaagcaaatgcattgtccttatccactattaatttctgtccacttcttgatttacccattgttattaaaaaacatacttcttattccttttcaaggcatatgtacaacaattagagagcagtaagctgaaacttgcaagcttggagcaagagatcaataaagctcgccaacaagtaagtttttcgtgcttgatgttgttaagtttcagtcgactgcatttttttgcttcactgtcttagatggtagctataaatgtcacctggatattgtactgcagggaatttacatttcgagctcaggagaccaaactcatgctatgagtggaaatggtaagatttgtgtacgcacagttgcacgcgtacctgctcacttgtgtgtactttagtgtttgttaggggttgaactgataagagtaagttttctctgcaggagctatgacttttgatttagaatatgcccgttggttggaggaacaaaacaagcagataaatgagctgaggactgcagtaaatgctcatgcaagtgacagcgacctccgtctcattgtagatgggataatggcgcattacgatgagatattcaggctgaagggtgttgccgcaaaggctgatgtgtttcatatactttcaggcatgtggaaaacacctgctgaaaggtgcttcttgtggcttgggggttttcgttcctctgagcttctaaaggtgcataagccgtgtgctgcatataagaaaattataaaagcacacctcagggatactttagtcctaaagaaaaaagtcatctaatatcttgttttaatgggtattgcatcgtaacactaatttcaatctcctgtaaaatttcagcttcttgtgaatcagctcgagccattaactgagcagcagttgttgggactatcgaacctccaacagtcctctcagcaggctgaagatgctctatcacagggaatggaagcgttgcaacaatccttggcagatacgttggccgggtcccttggtccatcaggatcttcagggaacgtggcaaactacatgggtcaaatggctatggccatgggcaaacttgggacccttgagaatttcctccgtcaggtaagcgtctttcaaaatcatgtggcatatttcaaactgtttcgaaattttctgttatctctgattctggcaagcatgcactcttgttattgctgtaacaggcaaaatatttttttgaaacctgatactagtttgctgatgacttgacgagttactgaaattttttgtgttccctttcttatttgtgcttttgatcccgagcaagttctgcaagttttagatgaccctttttttttctgaagagttctaatcttctttctgccaggctgacaatttgcggcagcagactttacatcaaatgcagcgaattctgacaatccgacaagctgcccgtgctctacttgcaatacatgattacttctcacgtttgcgtgccctgagttctctctggcttgctaggccacgggagtaacaacacatagggtgcatcaccgttaatgcttcatgaactgatctgggaggaacggcggagcgggactgattgcggatgcatttgcagaagattggtggctcagttccctcggcacaagttgtattgacaccttttggtttcatgttgtacctgatgttgtacaagtagggtaaagcttgtaacttgtaagttatggtgaatttatgattggcagattgtacaattgtattagcaataaaataaaaggtag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0318600, RefSeq:Os03g0318600