Os03g0335300

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Revision as of 12:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0335300| Description = Similar to Vacuolar sorting receptor homolog (Fragment)| Version = NM_001056569.1 GI:115452866 GeneID:4332756| Lengt...")
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Gene Name

Os03g0335300

Description

Similar to Vacuolar sorting receptor homolog (Fragment)

Version

NM_001056569.1 GI:115452866 GeneID:4332756

Length

6505 bp

Definition

Oryza sativa Japonica Group Os03g0335300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12452602..12459106

Sequence Coding Region

12452897..12453197,12454593..12455279,12455416..12455504,12455609..12455678,12455752..12455835
,12455938..12456014,12456112..12456193,12456380..12456462,12456544..12456610
,12457062..12457193,12458406..12458512,12458637..12458744

Expression

GEO Profiles:Os03g0335300

Genome Context

<gbrowseImage1> name=NC_008396:12452602..12459106 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12452602..12459106 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagggggccggtgcggtgggcggtggtggtggtggtgatggcgatggtggaggcggcggcggggaggttcgtggtggagaagaacagcctgcgggtgacgtcgccggaggggatcaaggggaagtacgagtgcgccatcgggaacttcggggtgccgcagtacggggggaccttgcatggatgggtcgagtaccccaaatccaaccagaaggcttgcaagagcttcgaggacttcgacatctcattcaagtcaacccggtccggaggacgcccgaagttcgtgctcatcgaccgtggacagtgctatttcacaacgaaggcatggaatgcacaaaatgctggggctgcagcagttcttgttgtggatgacaagtcggagcctttaatcacaatggataacccagatgatgctggaacagagcaccttgaaaacatcactattccctctgtgcttataacgaagaaattgggcgatgacctaaaaaaatctgctgaaaatggtgatatggttagcgtccttctggactggagagaatctcttccacatcctgatgagcgtgtagagtatgaattctggacaaacagtaacgatgaatgtggtccgaaatgtgatatgcaaatggactttgttaagagctttagaggaactgcacaaattcttgagaagaagggatacacccagttcactcctcattatattacatggtattgccctgaagcttttgttgtgagcaagcagtgcaaatcacagtgtatcaatcatgggaggtattgtgcaccagacccagagcaggatttcagccagggatatgatggaaaagatgttgtggttcaaaatctacatcaaatttgtgtattcaaggctgctaatgagagtgggaagccatggttgtggtgggactatgtgcatgacttctcaattaggtgccctatgaaggagaagaaatacacacctgaatgtgctgttcatgttattaagtcactcgggttggatgttgagaagataaagaagtgtgttggagatcctgaagctgatgaggaaaaccctgttctgaaggcagaacaagatgcccaaattggtcatgataaacgaggagatgtcacaatactgccaacccttgtcatcaacaacaggcaatatcgaggtaagttggacaaatctgccgtgctcaaagcagtctgcgcaggatttgaggagacaactgagcctgctatttgtttgagcgaggatgttcaaacaaatgagtgtttggaaaataacggaggttgctggcaagatagggataataatgttactgcatgcaaggataccttccgtgggcgtgtttgtgaatgtcccgttgtgaaaggtgtaaagtttgttggtgatgggtacaccaattgtgaagcttctggcattggtaggtgcgaaattaaaaatggaggatgctggaaagaaactagaaatggcaagacaatatctgcctgctcaaatgaagtatctgaaggctgcaaatgtccaccaggtttcaagggtgatggaataaaaagttgtgaagatattgatgaatgcaaggaaaaactttactgtcaatgcaagggctgcagctgtgagaatacatggggtagctatgagtgcagttgtggcggtaacaacatgttatacatgagagagcatgacacttgtctcagcaaggaggctacgtcagctgttggctggagttttctgtgggttattttctttggacttgttcttgctggggtcggagcatatgcggtgtataaatacaggctacggagctacatggattcggagattcgcgcgatcatggcccagtacatgcctttggataaccaagaagcagctaaccaacatcatgtcgcgcatgctggtgatgatatttga</cdnaseq>

Protein Sequence

<aaseq>MRGPVRWAVVVVVMAMVEAAAGRFVVEKNSLRVTSPEGIKGKYE CAIGNFGVPQYGGTLHGWVEYPKSNQKACKSFEDFDISFKSTRSGGRPKFVLIDRGQC YFTTKAWNAQNAGAAAVLVVDDKSEPLITMDNPDDAGTEHLENITIPSVLITKKLGDD LKKSAENGDMVSVLLDWRESLPHPDERVEYEFWTNSNDECGPKCDMQMDFVKSFRGTA QILEKKGYTQFTPHYITWYCPEAFVVSKQCKSQCINHGRYCAPDPEQDFSQGYDGKDV VVQNLHQICVFKAANESGKPWLWWDYVHDFSIRCPMKEKKYTPECAVHVIKSLGLDVE KIKKCVGDPEADEENPVLKAEQDAQIGHDKRGDVTILPTLVINNRQYRGKLDKSAVLK AVCAGFEETTEPAICLSEDVQTNECLENNGGCWQDRDNNVTACKDTFRGRVCECPVVK GVKFVGDGYTNCEASGIGRCEIKNGGCWKETRNGKTISACSNEVSEGCKCPPGFKGDG IKSCEDIDECKEKLYCQCKGCSCENTWGSYECSCGGNNMLYMREHDTCLSKEATSAVG WSFLWVIFFGLVLAGVGAYAVYKYRLRSYMDSEIRAIMAQYMPLDNQEAANQHHVAHA GDDI</aaseq>

Gene Sequence

<dnaseqindica>296..596#1992..2678#2815..2903#3008..3077#3151..3234#3337..3413#3511..3592#3779..3861#3943..4009#4461..4592#5805..5911#6036..6143#aggactctaggtcggtgtttggctcgcctttgcttggacggaacaaccagccggcgactgcggcgactccgactcctcgcacgcacgcacgcacgcggccgtggaaatcgcgccggctcgcctcctccctccccacccccacccgctagatctcgccggcttccgtaggtcggtagatctcgctgcctcctcctcctgggaatctccgtctcctccgcaagattccaatcgggaggcggcggggcggcggagaagctcgctttggtggagtagtttgactaaccggtgcggcaggatgagggggccggtgcggtgggcggtggtggtggtggtgatggcgatggtggaggcggcggcggggaggttcgtggtggagaagaacagcctgcgggtgacgtcgccggaggggatcaaggggaagtacgagtgcgccatcgggaacttcggggtgccgcagtacggggggaccttgcatggatgggtcgagtaccccaaatccaaccagaaggcttgcaagagcttcgaggacttcgacatctcattcaagtcaacccggtccggaggacgcccgaagttcgtgctcatcgaccgtggacgtgaggactgacccctgttttttttttcagatctttgctatggtttattctgcttcttatatagcttgggaatttgctatctatcgaactgatttattgttggtcagttactgagggaaaatgggaaattaatgcatgcaattcttttattttgttcttaaggtagctcttacctcttagcattaattattagtcagctagcttccaactcttttcttgacgaaattttcgtgagtatgctctatttttagccttttgtgtttcgttggacgtagcctacttgttaggtaagtaagctattgcctattgattgattggtaaatacgtggttgtggattattttggtttgtatttggggtgacaaatccactttggataattgttgaatttgaagttaggacgccatcggtttgattcttctttaaggggttatgaatgctctgtagttcatagtatgacagggtgcttgactgtttaagttgttttgacgtttcctataccatagtttgtttacgagaaatttgaatccctatcactagagtaaatagtaaaatactactacctccgtttcatattgtaagactttctagcattttccatattcatataaatgttaatgaatctagacacatatatatacctagattcattaacatctatatgaatgtgggcaacgccagaaagtcttacattgtaaaacggaggaagtagtaaacacccaagttctatgttccaagaaggtacagaacgtcaaagtagtgaaggtacagaacgtcacaaaccctgacgtagcacttcatcttgtaagacctcttaacatgatactgatacgcttttaatcttgacttagataaagcatccccacggtagatgaacctatggctggctaaaaaaatgtctataaggagtactctaatatgactcacaacaaacactctcttgtggtgcgcacacaaggttgctaacctgtccacccaagatgaagtctcgattctaccttaatatcatgtattagtgtatggtggggttctgggggaatacctattatccctccatagcattggtagtatgatgaacaactatataacagaagaagtttcagatcagtcgtctgatttcaatttcattgaaatatccttgctagtattgggataggaagtcacgtgcatgatgcaatagattttgattcctgatgtctcacaatttatttgtccttttggaagaactccatctggcgcatataactacgtaaggtagaaaaattaaacatatgtttgcttgactgccattggtattttatttccctgtttagatgattatctaatcataagacatctcaatcatgattggaaaaccatcttttatttttatagttaattccactttctggtacagagtgctatttcacaacgaaggcatggaatgcacaaaatgctggggctgcagcagttcttgttgtggatgacaagtcggagcctttaatcacaatggataacccagatgatgctggaacagagcaccttgaaaacatcactattccctctgtgcttataacgaagaaattgggcgatgacctaaaaaaatctgctgaaaatggtgatatggttagcgtccttctggactggagagaatctcttccacatcctgatgagcgtgtagagtatgaattctggacaaacagtaacgatgaatgtggtccgaaatgtgatatgcaaatggactttgttaagagctttagaggaactgcacaaattcttgagaagaagggatacacccagttcactcctcattatattacatggtattgccctgaagcttttgttgtgagcaagcagtgcaaatcacagtgtatcaatcatgggaggtattgtgcaccagacccagagcaggatttcagccagggatatgatggaaaagatgttgtggttcaaaatctacatcaaatttgtgtattcaaggctgctaatgagagtgggaagccatggttgtggtgggactatgtgcatgacttctcaattaggtgccctatgaaggagaagaaatacacacctgaatgtgctgttcatgttattaagtcactcggtatgtcttttggcaccctgaatttaattcatcccaatatttctttgttttgtttttaactgatgtgtaagtaattagctaagaacctgcctagtgaacttattatgacactttctcgtcttctgttttattacagggttggatgttgagaagataaagaagtgtgttggagatcctgaagctgatgaggaaaaccctgttctgaaggcagaacaagatgcccaagtatgtaatattgattatcttaactagtgtaatgtgcttgagtattttcttcaagttatgtccttatgctagatactgtactcaaccctactcttctattatagattggtcatgataaacgaggagatgtcacaatactgccaacccttgtcatcaacaacaggcaatatcgaggtctgtatatcattttgaagcaattatttttgggtgctatgttttttgtcttacaattaagctttctcttcaggtaagttggacaaatctgccgtgctcaaagcagtctgcgcaggatttgaggagacaactgagcctgctatttgtttgagcgagggtctgtaaacttcgttctttttccttttttctgcaggatgtcttcttatatcttatatgatcactcatttgctcatctttttccttctatttgtttcatcagatgttcaaacaaatgagtgtttggaaaataacggaggttgctggcaagatagggataataatgttactgcatgcaaggtatggcgttaatccctcagatactgctagtgtttcagcttatttcttgattagtcttgttggataattctaatttaatgaaatatgaaaaatgtaggataccttccgtgggcgtgtttgtgaatgtcccgttgtgaaaggtgtaaagtttgttggtgatgggtacaccaattgtgaaggtgctctttgaatttacttatagaattgatttacctacaattatgtgataggctttctgattagttatatttttgctgctacttcagccttagtatgtagtcctataccttttgtgcagcaccatcttattatcatatttatattagctgttaattacaacttggttgacattttgccatcgtcagcttctggcattggtaggtgcgaaattaaaaatggaggatgctggaaagaaactagaaatggcaagacaatatctgcctgctcagtaagtagacctttacctcaagttgtcaatctgtgcctcacaattctttaacgtgtgaaaagctaatgtgaaattctgcagaatgaagtatctgaaggctgcaaatgtccaccaggtttcaagggtgatggaataaaaagttgtgaaggtattttataattgttgtgaagcttatgtattttaaccatgagtggaacacttttctaaacaagcatatattgaattttgattcttaactttgggttagcactctttgtaatttagataacacttaaatttgtgcttgagaaagataatactacctccgtcccagaatataaggagttttagagttggacatggttattaagaaagtaggtaaaattaaacggtgaaagattgtgattggttgagaagggaattttggtggagaagttgttatattttatgacaaattttgtaggctaaaagttctcatattttgggacggaaggagtatttcatctgagttctttaacaaatttcacctgctaaccacagtataatgattccaaaatttgagaactctgtgaccaatgcagattttcatttgtaaataaaaatattctacctgcttgcagatattgatgaatgcaaggaaaaactttactgtcaatgcaagggctgcagctgtgagaatacatggggtagctatgagtgcagttgtggcggtaacaacatgttatacatgagagagcatgacacttgtctcagtgagtaacccaacctgggctttcagcggttatttacttctattatttataatctatatcttgaaatttatgttgagcaaaatacttcttcttgttctttttttttttttggtttgagatgctcaatcttatagatcatcttgaaacaaggattatctattgctcagttatccggtaatttaagcaattatataggcagtgattttaatgaagtttccttatgttacattcccaagagccacgtatcttatcatattcatatcattcggaaggaggaggagcagagtcttaatacaactcatagctgtcttggtgcagaaaatgaaaagagaaacaaattactggcctaaacattaccagttactagcatccaagagagaaactgcatcagttttcctcaccacactcccaagcaacctgctgtacaattacctaattttcttataatcttatattacagtcctattggtgttatgcagccaaccaaagctattgtagtcagatgaccaaggccatatagttctgggaactccaatagtgacctttgaagagatttcatcatgcttaatttcaagtattaatcaagcaaacctgcaatacttccttttgctatccttttctgtctgtgtttgagatgggggtgctccacctccaccttatgtggaaggtgtttggatgtagggataggatagaggggataaggatagggaaatcaaccgagggctagggcagaggattagagcaggtacaatagcagactataagccagctataaacatattttaaggagttaaaagaggagagataagagcagcgggctacagatttgtgtgtatgataggtgggaccagacattaattatatagtacatgtttatagttaactattgtatgaattagctattaaattgactatatatgatttggagccaatagttagttatactattaaacttgctcttagagtgatggggtgagaagtaggggtagaatcagtcagaaccctttattgaagatctgtggacccttttcctctgacaccaccttaatctttgcactccacttcctctgtcacctgatctcagctcctcatccaagtgttatgtgcgatattctactgaactaatggcttgaacaagtaaaagtgtggcaaatttttttacaccttttgtatattctacctaccctaatgctgtttctaaacgatatgcaggcaaggaggctacgtcagctgttggctggagttttctgtgggttattttctttggacttgttcttgctggggtcggagcatatgcggtgtataaatacaggctacgggtaaaacatctaccaccctttatttcctcactttttagttatcatatggccacatgtgggacttgcacctgatacataattgagttgctaactggattcaatctgtgccatgatgcctcatcagagctacatggattcggagattcgcgcgatcatggcccagtacatgcctttggataaccaagaagcagctaaccaacatcatgtcgcgcatgctggtgatgatatttgaaacggcactcctttcccgggtgcgcgaacatttcatatgtgtactgatgcaccggtggccatcgactttacaggggtcaactgggcgcaaaagatagtgtgtgtgcgcgagaaagattagccgtatacatgtatgattgtaagagagacatcgtttgagatcatctttctgtaaaacccaaagaacagcataggcaaatattgtgacagttttagcccttcctcagactcagctgctcctgctgcatacatgagtactgaatacatgatacattcaaatgtcgtgtaaatacctgtctgttcttcagactagagaattcctcctcgcctcaacttaataaaagctcgagtcttgaaggggtc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0335300, RefSeq:Os03g0335300