Os03g0337600

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Revision as of 12:37, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0337600| Description = Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD) (Fragment)| Version = NM_001056584.1 GI:1154528...")
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Gene Name

Os03g0337600

Description

Similar to Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD) (Fragment)

Version

NM_001056584.1 GI:115452896 GeneID:4332771

Length

3593 bp

Definition

Oryza sativa Japonica Group Os03g0337600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12581089..12584681

Sequence Coding Region

12581168..12581273,12581392..12581514,12582017..12582129,12582325..12582513,12583294..12583419
,12583823..12584338

Expression

GEO Profiles:Os03g0337600

Genome Context

<gbrowseImage1> name=NC_008396:12581089..12584681 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12581089..12584681 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaccgcgtgcccgccgctctcgctgcagccggcctacctctcggggaggtccgcgcgcgcgcgccgcccgccgcccgccgtccgctgcagcgccgtcggagaggttatggcggagacggcggcggtcgggacggcggaggagccgctgctggtgagcgcgatcaaggggaggaaggtcgagagaccgccggtctggctcatgaggcaggccgggaggtacatgaagagctatcaattgctctgcgagcgacatccttcattccgtgaaagatcagaaaatgttgaccttgttgttgagatctctctacaaccatggaaggttttcaagcccgatggagttatcctgttctcagatatccttacaccgcttcctgggatgaacataccttttgacattgtgaaaggaaaaggtccagtgatatttgatcccttgagaacagcagctgctgtgaatgaggtcagagaatttgttccagaggagtgggtcccatatgttgggcaggctttaaacattttgcgggaagaggttaacaatgaagctgccgtgttgggctttgttggagctccctttacattggcatcctattgtgttgaaggaggttcatcaaaaaacttttcaaagattaagaaaatggccttctcagaaccagagattctgcataatttgctacagaaatttactacgtccatggctaactacattaaataccaagctgacaacggagcacaagctgtccaaatttttgactcatgggctacagaactcagcccagttgattttgaggagtttagcttgccttatctgaagcagattgtggatagtgtcaaagaaacacatcctgaattgcctctgatactatatgcaagtggatctggtggactgctggagaggcttccactgacaggtgttgatgttgttagcttggactggacggttgatatggctgaggggaggaaaagattgggatctaacatagcggttcaagggaatgttgaccctggcgttctttttgggtcaaaagagttcataagcaagcggatttttgacactgtgcagaaagctggtaatagtgggcatgtattgaaccttggtcatggcattaaggtaggcactcctgaggaaaatgttgcccatttctttgaggttgcaaaagggatcagatactga</cdnaseq>

Protein Sequence

<aaseq>MATACPPLSLQPAYLSGRSARARRPPPAVRCSAVGEVMAETAAV GTAEEPLLVSAIKGRKVERPPVWLMRQAGRYMKSYQLLCERHPSFRERSENVDLVVEI SLQPWKVFKPDGVILFSDILTPLPGMNIPFDIVKGKGPVIFDPLRTAAAVNEVREFVP EEWVPYVGQALNILREEVNNEAAVLGFVGAPFTLASYCVEGGSSKNFSKIKKMAFSEP EILHNLLQKFTTSMANYIKYQADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDS VKETHPELPLILYASGSGGLLERLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVD PGVLFGSKEFISKRIFDTVQKAGNSGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY</aaseq>

Gene Sequence

<dnaseqindica>80..185#304..426#929..1041#1237..1425#2206..2331#2735..3250#aggtcgtctctcgccgagacgctgcccaccccaatccggcagcacagcagcagcagaagcagctcggatccctcctgcaatggcgaccgcgtgcccgccgctctcgctgcagccggcctacctctcggggaggtccgcgcgcgcgcgccgcccgccgcccgccgtccgctgcagcgccgtcggaggtcagcgcctgccgtaaatccactgtatcgtttgtttgtttacaccagattgaggcggagtttgattggtgatgggtttggggatggtctcgttccggggggtggttgtgtttttcagaggttatggcggagacggcggcggtcgggacggcggaggagccgctgctggtgagcgcgatcaaggggaggaaggtcgagagaccgccggtctggctcatgaggcaggccgggaggtacatgaaggcaggtttactctaattcgttttttttctcctgcattgcagagtaatttgcatccaaatgtgcaactagaggaagatgttccaatttgcttgcaattgttatcgcgtttcaagtaagatgtggaccatatctcggtaactgctagaaattgacaaacatcaacttcctgatttttttttcaaacttagtgaccactcataaactatcctattactggaacctcccttatgcacaattttctctttttcttgtacagtcgtcggattcattaaagtggggtaagtttacagaaaacaaatgaatcaatagaacattaatgcaggcatcggtaaacatgaaacagtttattccatggtatacaatacttaatagcaagctccagttgtttgaatcgtgacaaatgcccattctttgaagtaatactttattttcgtgttgcaacaatccttacaatcaggaccctttttccttaccaacttcttgccgttcttttttttaacagagctatcaattgctctgcgagcgacatccttcattccgtgaaagatcagaaaatgttgaccttgttgttgagatctctctacaaccatggaaggttttcaagcccgatggagtaagctgcagattttggccctttctgtatgttgtttgtaattcctcttttgtggctatctaagaagcttttgcatgaaaaaaaatgagaaaagaagcttacgtggatttgagatgttgtttgcctataatatctaatgctctgttattgatgctatctcctctgatgctgttgtttttaatttgattttgccaggttatcctgttctcagatatccttacaccgcttcctgggatgaacataccttttgacattgtgaaaggaaaaggtccagtgatatttgatcccttgagaacagcagctgctgtgaatgaggtcagagaatttgttccagaggagtgggtcccatatgttgggcaggctttaaacattttgcgggaagaggttagtattgactttcagaatccaacttcggagattggaaatagatggcctattggagagcattacatcataaaaagtagctgatcatttattttcacttcctttgtcagcctacaatctttgaactgttacactctaattgatcaattaccttataatgctgattttttgtgctgttttctcaaaatggcattacttggagtttgtcaagtcaatattttagattaattaaaagatggaaatgtaatcactaaaacttggaagctcatttccattcttttggattggcttcatggctccactgttacttggaatttggcattttattgaaaaactataaattattctgatccttgtttagcatcaaacaattagtccattactgacttttagattcagggctgatatattctggagattggagagtgcagatcgtatagcacagatgaaattccatgcctctatggcaatagtgttcttccatatttgttttatgagatatgaactacaatttggggaggttgtgctggagagggatgacatcagcagttgacgttgcaatgctttttcaaaacactcccattgtactactgttggatttggtggcctgtgtatgcaaagtgaacagttgcttgcgagcacaattgtatactaagttatttagttaaacttgcagaattctgcaaatatatagttaactagaatctatgatcattttttgtgctttgttttgtgtactaattatttcattggagtgacacccactgtttccttcctcaggttaacaatgaagctgccgtgttgggctttgttggagctccctttacattggcatcctattgtgttgaaggaggttcatcaaaaaacttttcaaagattaagaaaatggccttctcagaaccagaggtattgacacaatcctattgctgataaaaagagtacatgagttctcttccattatagacaactgcctgttgcttcttttataatggcgctgattgtgagcacatagaatactgaatattaatcaaccttccctgaaaaaaaaaaggttatgcagcctgctgacagtcctaggtaattagcatggattttaaaatattatacttgactttgtctgataaagtattgcaaatgatgaaatggcgttattatattttgttaacgtgatgcatatgaggttcactatcattgttggcttgcttattgtttggtatgaacgaaattttgggagtcatatttagattaatttcccttcatttatctgttcatgtgggcaaatttgaccttaatatctatattcttgtagattctgcataatttgctacagaaatttactacgtccatggctaactacattaaataccaagctgacaacggagcacaagctgtccaaatttttgactcatgggctacagaactcagcccagttgattttgaggagtttagcttgccttatctgaagcagattgtggatagtgtcaaagaaacacatcctgaattgcctctgatactatatgcaagtggatctggtggactgctggagaggcttccactgacaggtgttgatgttgttagcttggactggacggttgatatggctgaggggaggaaaagattgggatctaacatagcggttcaagggaatgttgaccctggcgttctttttgggtcaaaagagttcataagcaagcggatttttgacactgtgcagaaagctggtaatagtgggcatgtattgaaccttggtcatggcattaaggtaggcactcctgaggaaaatgttgcccatttctttgaggttgcaaaagggatcagatactgaaatacctaggctattcgatgcattcctttctccctagtccccaccggcagaagttgtagattctgctgcttgaggatagatgcaggaagccatgtctagcgtagaatacctgaagagcacatcttttgcgatttctgtgttttgcgatcaaatttttattttattgttagtcttgtaaggttatcacttgaggtgtaagaaagttcctacttgtttatagcaagtatatattctaatcaaatctgtaaccccgagattatcaatttgtatcggtaagaaataaatattgtatttgaaaatgttttttttcctaaaaaagaagcaggatgtaatgttaccttct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0337600, RefSeq:Os03g0337600