Os03g0340500

From RiceWiki
Revision as of 12:38, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0340500| Description = Similar to Sucrose synthase (EC 2.4.1.13)| Version = NM_001056599.1 GI:115452926 GeneID:4332788| Length = 6189 bp| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0340500

Description

Similar to Sucrose synthase (EC 2.4.1.13)

Version

NM_001056599.1 GI:115452926 GeneID:4332788

Length

6189 bp

Definition

Oryza sativa Japonica Group Os03g0340500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:12726466..12732654

Sequence Coding Region

12726747..12726785,12727387..12727525,12727621..12727865,12727959..12728280,12728556..12728780
,12728960..12729126,12729203..12729319,12729764..12729937,12730147..12730242
,12730399..12730615,12731042..12731160,12731253..12731445,12731987..12732138
,12732260..12732386,12732506..12732603

Expression

GEO Profiles:Os03g0340500

Genome Context

<gbrowseImage1> name=NC_008396:12726466..12732654 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:12726466..12732654 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgggccccaagctcgaccgcaccccgagcatccgcgaccgcgtcgaggacaccctccacgcccaccgcaacgagctcgtcgccctcctctccaagtacgtgagccaggggaaggggatcctgcagccgcaccacatcctcgacgcgctcgacgaggtccagagctccggcggccgcgccctcgtcgagggccccttcctcgacgtcctccgctccgcccaggaggcgatcgtgctgccgccgttcgtggcgatcgcggtgcggccgcggccaggggtgtgggagtacgtccgcgtgaacgtgcacgagctcagcgtcgagcagctcaccgtgtcggagtacctccgcttcaaggaggagctcgtcgacggccagtacaacgatccgtacatacttgagcttgattttgagccattcaatgcctcggttccacgcccaaatcggtcatcatcaattggaaatggcgtgcagtttctcaacaggcacttgtcttcgatcatgttccggaacaaggattgcctggagcccctacttgatttccttcgtgggcatcggcataagggtcatgtcatgatgctaaatgacaggatacagagtctgggaagacttcagtctgtgctgacaaaagctgaggagcacttgtcgaaactcccagctgacacaccatactcacagttcgcatataagtttcaagaatggggattggagaagggttggggcgacacagctggatatgtcttggagatgatacatctccttctggatgtgcttcaagcgcctgatccatctactcttgagacgttcttgggaaggatccccatgatctttaatgtcgtcgtagtgtctcctcatggatattttggccaagccaatgtgttgggcttaccagatactggagggcagattgtctatatactggaccaagtccgtgcattggagaatgagatggttcttaggttaaagaaacaaggccttgattttacccctaaaattcttattgttactcggctgataccagaagcaaaagggacatcatgcaatcagcgtcttgagagaataagtgggacacaacatacttacatattacgagtgccattcagaaatgaaaatgggatactcaggaaatggatatcaagatttgatgtatggccctacctggagaaatttgcagaggatgctgctggtgagattgctgcagaactacaaggtactccagacttcataattggaaactacagtgacggtaatcttgttgcatcattgctatcttacaagatgggaattacccagtgcaatattgctcatgctttggaaaagactaaatatccagactcagacatatactggacgaagtacgatgagaagtaccatttctcctgtcagttcacagctgatataatcgccatgaacaatgctgattttataatcaccagcacataccaggaaattgctggcagcaaaaacacagttggacagtatgagagccatactgcatttactcttcctggtctgtatcgtattgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagacatgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagagcaaaatgacgaacatattggacacctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttgctggctataacgatgtcaagaaatccaaggacagagaagaaatcgcagagattgagaagatgcatgaacttattaagacctataacttgtttgggcagttccgttggatctcggctcagacgaacagggctcgcaatggtgagctctatcgctacatagctgatactcatggtgccttcgtgcagccagctttctacgaagcattcggtctcactgttgtggaggccatgacatgtggactccctacttttgcaacagtccatggtggacctgccgagattatagagcacgggatctcagggttccacatagatccttatcatccggatcaagctgcaaatctgatagctgacttcttcgaacaatgtaaacaagaccccaaccattgggttgaagtttctaatagaggcctacaacgtatatatgagaaatatacatggaagatctactctgagaggttgatgacattggctggggtttatggcttctggaagtatgtctcgaagcttgagaggcgggagaccaggcgctatcttgagatgttctacatattgaagttccgtgaactggcgaagactgtacctcttgcagtagatgaggcacactga</cdnaseq>

Protein Sequence

<aaseq>MSGPKLDRTPSIRDRVEDTLHAHRNELVALLSKYVSQGKGILQP HHILDALDEVQSSGGRALVEGPFLDVLRSAQEAIVLPPFVAIAVRPRPGVWEYVRVNV HELSVEQLTVSEYLRFKEELVDGQYNDPYILELDFEPFNASVPRPNRSSSIGNGVQFL NRHLSSIMFRNKDCLEPLLDFLRGHRHKGHVMMLNDRIQSLGRLQSVLTKAEEHLSKL PADTPYSQFAYKFQEWGLEKGWGDTAGYVLEMIHLLLDVLQAPDPSTLETFLGRIPMI FNVVVVSPHGYFGQANVLGLPDTGGQIVYILDQVRALENEMVLRLKKQGLDFTPKILI VTRLIPEAKGTSCNQRLERISGTQHTYILRVPFRNENGILRKWISRFDVWPYLEKFAE DAAGEIAAELQGTPDFIIGNYSDGNLVASLLSYKMGITQCNIAHALEKTKYPDSDIYW TKYDEKYHFSCQFTADIIAMNNADFIITSTYQEIAGSKNTVGQYESHTAFTLPGLYRI VHGIDVFDPKFNIVSPGADMSIYFPYTEKAKRLTSLHGSLENLISDPEQNDEHIGHLD DRSKPILFSMARLDRVKNITGLVEAYAKNARLRELVNLVVVAGYNDVKKSKDREEIAE IEKMHELIKTYNLFGQFRWISAQTNRARNGELYRYIADTHGAFVQPAFYEAFGLTVVE AMTCGLPTFATVHGGPAEIIEHGISGFHIDPYHPDQAANLIADFFEQCKQDPNHWVEV SNRGLQRIYEKYTWKIYSERLMTLAGVYGFWKYVSKLERRETRRYLEMFYILKFRELA KTVPLAVDEAH</aaseq>

Gene Sequence

<dnaseqindica>5870..5908#5130..5268#4790..5034#4375..4696#3875..4099#3529..3695#3336..3452#2718..2891#2413..2508#2040..2256#1495..1613#1210..1402#517..668#269..395#52..149#agtctcgcccaccgccaccgccactgcactccggtcgccggagcagccgccatgtcgggccccaagctcgaccgcaccccgagcatccgcgaccgcgtcgaggacaccctccacgcccaccgcaacgagctcgtcgccctcctctccaagtgagcgcccgccgcccgccagcaaccgatcgccgagccgcgccgcgcggcacagattttacttgctcgctgacgagttcttctccgggtgggtggcgtgcgtgcgtgcgtggcggcaggtacgtgagccaggggaaggggatcctgcagccgcaccacatcctcgacgcgctcgacgaggtccagagctccggcggccgcgccctcgtcgagggccccttcctcgacgtcctccgctccgcccaggtgcgccgtgcgcggggaagcactcgaaacgctggggccgcggcggcggcggcggcggctttttttttttggtggggctaatcctgagtaatctcgtgccgtttcgcgtggtttttcgcaggaggcgatcgtgctgccgccgttcgtggcgatcgcggtgcggccgcggccaggggtgtgggagtacgtccgcgtgaacgtgcacgagctcagcgtcgagcagctcaccgtgtcggagtacctccgcttcaaggaggagctcgtcgacggccagtatgcgctcctcccctgctcctgcactctgctttcgtttttcgttgctttcgtttttcgtgggaattttggtggttgggttcaggacgttatcctgtttaggggtttaggctctagtggctgtgccgggtttgggttctccgcatcccatgactgtttgctcgattcgctgtcgttgcaaaaggtgaatattagtgggatggttgattggttgtgtgcgggtaattgcctaattggtaagcgatgttgatgtgttgttttggatcggtaaaatttgtttgagtgagatattgataatagtttgtttcagtcaaaattcacaaccttcgtgactgtgttattacgttggtttatatatttgcaactgggtgctccaggttagtaatctaggagtactaataatgtagtagatctcaaagttagagctgcactttggtatatagacttacgggtttctgctggcagaatgattgaatttctgtttgtgaccctatctgggttctcttttcaccaaactcttaacctggattaagtatgtcaggtacaacgatccgtacatacttgagcttgattttgagccattcaatgcctcggttccacgcccaaatcggtcatcatcaattggaaatggcgtgcagtttctcaacaggcacttgtcttcgatcatgttccggaacaaggattgcctggagcccctacttgatttccttcgtgggcatcggcataagggtcatgtgagttttgtaactgttgtggaaattttaactgattcttttcttttgtaatttgttgtgtttgatcttaatttgggaatgctgtcacgtaggtcatgatgctaaatgacaggatacagagtctgggaagacttcagtctgtgctgacaaaagctgaggagcacttgtcgaaactcccagctgacacaccatactcacagttcgcatataagtaagtgactaagtgtagcccatcacattaaggcttgagtttctgcatagtttctatattgatagggggatgcacttacagacttttcaatttcagatgcactttgagctattctaaaaaatgtaaaacacctctctagaaatggtagtctctacgaaattaaagtaccgggctgttggcaagtataaactcaggttgaacttattggccatatgttgaccgatatgcttttgacatgtcctgcaatacgaaatcactgaaaaatgcttcccaatatacactgtatctatcatatattgttcacagatattatctaaaaaaaatatattgttcacagatttgttataaagtgcgtatttgatagtgcaaatcacattctggaagaatcgctttacacatggctatatttttacctataacattcaggtttcaagaatggggattggagaagggttggggcgacacagctggatatgtcttggagatgatacatctccttctggatgtgcttcaagcgcctgatccatctactcttgagacgttcttgggaaggatccccatgatctttaatgtcgtcgtagtgtctcctcatggatattttggccaagccaatgtgttgggcttaccagatactggagggcaggtaccagttgatgacaaaacaccaagatttttttgcttatcaggacacagtcaatgatctttagcttatcatggctataaagtgcctccctctcaccatttattgcctttaatcttttgaagcctcatgctgttgttttcctatgcatttgtccagattgtctatatactggaccaagtccgtgcattggagaatgagatggttcttaggttaaagaaacaaggccttgattttacccctaaaattcttattgtaagtgcatgtctatttccttcctcaaatgtggcatctgttaagtgtgatgttctattctatcagtagttcggtacatgctccagttaccttgttttatggaacattactattttttgcatgctcctgcacatggtgaacttgatttatcgttgtgattctttcacgtgaaaaagaagatcatctaagcatttttttatgtcgttgaggttactcggctgataccagaagcaaaagggacatcatgcaatcagcgtcttgagagaataagtgggacacaacatacttacatattacgagtgccattcagaaatgaaaatgggatactcaggaaatggatatcaagatttgatgtatggccctacctggagaaatttgcagaggtgaatatgcatcccttttttacttgtagagattcctcagatggccctgaactggttttcttcctctgctactgataattgaaggattacatttatcaagaacattgaaaaataatcaaattctgtttgttccattatgcactacaactgtcattttttgtttaaggaacttgagataaaaggactaaatccaagatgaagagggtaaatcacttatgtagaacagtaacaaaacaaaattcaattcagtatatgagaactttcgagggtgtgtttttgcatttgatttgtagtataaagagctttggtgacctttcctagttagaaccccgattctgtatatggcacttcctcctctgggtgtgaactttggagtactgttctcctcaactgaaacttcaattctatatttgagcactatagtaatgcgttcttgctttacaggatgctgctggtgagattgctgcagaactacaaggtactccagacttcataattggaaactacagtgacggtaatcttgttgcatcattgctatcttacaagatgggaattacccaggtaagtccttgttaactactattaaaagttcccaccacctttttggttgctgattatgccggtaaattgattgcagtgcaatattgctcatgctttggaaaagactaaatatccagactcagacatatactggacgaagtacgatgagaagtaccatttctcctgtcagttcacagctgatataatcgccatgaacaatgctgattttataatcaccagcacataccaggaaattgctggcaggttttattctcttctgccttgttggctgttaaagtttttttttcatcacgtttcattattcgattattgatttgttcacgcatagtagcatgtgaaatctggcgcacatgcctagtagttattcatggctattcttagggtatcctgattctgattcttaattttgtccttttcttcagcaaaaacacagttggacagtatgagagccatactgcatttactcttcctggtctgtatcgtattgtccatgggattgatgtttttgacccaaagttcaacatagtctctccaggagcagacatgtctatatactttccgtacactgaaaaggccaagcggctcacttcgcttcatggttcacttgaaaacttgatttctgacccagagcaaaatgacgaacatatgtgagtaatttctgttatcttacttctttttgcggcactttaaggttgagttttatgtcctttggtctcttctcattgcttgatgacagggttacttgctgtgtctttttctagattttatatatttaccaggttatcatgaatgggtgatactagaatgtacacaattagacacatattttagagatactaacaggatgtgtggaaaagtagatagttgtggcatgtaacatgtgactctcgttgtttctaatgatgataactactttttgtagtggacacctggatgacagatcaaaacccattctcttttccatggcaagacttgaccgagttaagaacataacagggttggttgaagcttatgctaaaaacgctaggctgagggagctggtaaaccttgtcgtggttgctggctataacgatgtcaagaaatccaaggacagagaagaaatcgcagagattgagaagatgcatgaacttattaagacctataacttgtttgggcagttccgttggatctcggctcagacgaacagggctcgcaatggtgagctctatcgctacatagctgatactcatggtgccttcgtgcaggtatagtcatcagtttaacttacatgttatatccgaacatatggaatgggtggtacatgtcacctacatattgacttgccttaccaattacagccagctttctacgaagcattcggtctcactgttgtggaggccatgacatgtggactccctacttttgcaacagtccatggtggacctgccgagattatagagcacgggatctcagggttccacatagatccttatcatccggatcaagctgcaaatctgatagctgacttcttcgaacaatgtaaacaagaccccaaccattgggttgaagtttctaatagaggcctacaacgtatatatgagaagtcagtactgccaatcctgcgagtcctgtttttaacacaggtgtttttcatgcctcttgtgtagtatttctatttactgaccttgatgtttatagatatacatggaagatctactctgagaggttgatgacattggctggggtttatggcttctggaagtatgtctcgaagcttgagaggcgggagaccaggcgctatcttgagatgttctacatattgaagttccgtgaactggtatgcaaaaagttctgccctcttaggacccctttgaatcaaaggatttatgtaggaattttataggattcaaatactataggaaattttcctatttggccctttgattcaaaggattgaagctttccaaatcctatgaaattcctatggaatggcacattgcatgtggaggaaatttagcaagagctccaacctcttggaaaatttcctttgagtctatctctcttatccgattcctgcgtttttcctgcgctccaatcaaacgatcattccttttcctgtgttttgcaatcctctgttttacacttcaattcctatcagaatactgtgtttttcctattcctccgttttttctaccctgcgattcaaataggcccatagtacacaccgaaatactgtagttatcaaaagcacggccaatacatgccatttgctccgattagattgacatagtagtataggagtactaatccaactaaggtatatatatatatattttcccctggagagaatagaaggagcaatgctttctgatctgaaagaggatagtttatacgagtttcattttgattggctaataaatatttttccttttgtgcaggcgaagactgtacctcttgcagtagatgaggcacactgactgtaggtcctcgacgtgatgagatctgagggaaatcttcctgctgtcagtgggaatggtataggcaataatgtgcagcagatggccgcttggccgataataaaatggaatgtaacttgtgtgttcagcaagtgacgaacttgggagttgggactctgtaaaactagatttgtcaaacatcttgtctatgtacattaaaatagtttgatactcagtgcttcattgccattgtgttaatttgataatctgttaccttgtactattaagctaactgttttccc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0340500, RefSeq:Os03g0340500