Os03g0355600

From RiceWiki
Revision as of 12:39, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0355600| Description = Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin be...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0355600

Description

Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment)

Version

NM_001056670.1 GI:115453068 GeneID:4332864

Length

6041 bp

Definition

Oryza sativa Japonica Group Os03g0355600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:14137836..14143876

Sequence Coding Region

14138100..14138396,14138530..14138733,14138818..14139007,14139125..14139516,14139606..14139698
,14139996..14140175,14140247..14140310,14140435..14140646,14140918..14141010
,14141095..14141274,14141668..14141803,14141891..14142141,14142231..14142344
,14142469..14142666,14143799..14143876

Expression

GEO Profiles:Os03g0355600

Genome Context

<gbrowseImage1> name=NC_008396:14137836..14143876 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:14137836..14143876 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cacgactccaagtacttctccaccaccaagaagggggagatccccgagctcaaggaggagctcaactcccagtacaaggataagagaaaagatgctgtcaagaaagttatcgctgctatgactgttggaaaagatgtttcatctttgtttaccgacgttgtgaactgcatgcagactgagaacttggagctgaagaaactagtatatttatatctgattaactatgccaaaagtcaacctgaccttgccatacttgctgtaaacacatttgttaaggattcacaagatccaaatccactgattcgtgctttagctgtgaggacaatgggttgcatccgtgtggacaaaatcacagagtatctctgtgatcctcttcaaagatgcctcaaggatgatgatccgtatgtacggaagactgcagctatttgtgttgctaagctttatgatataaatgctgagctagttgaggacagaggattcctagaggcccttaaagacttaatatctgacaataatcctatggtagttgccaatgctgttgctgcgcttgcagagattcaggacagcagtactcgtccaatctttgaaatcaccagtcatacgctgtcaaagcttctgactgctctgaatgaatgcacagaatggggccaggtttttattttggattctctgtcaaggtacaaagcagcagatgccagggaagcagaaaatatagtggaacgggttacaccccgtctgcaacatgcaaattgtgctgttgttctctctgctgtaaagataatccttttacaaatggagctcattactagcacagatgttgtccgtaatctctgtaagaaaatggcaccccctcttgttacgcttttgtcagcagaacctgagattcagtatgtagcgttaaggaacattaatctgattgttcagaaaaggcctactatacttgcacatgaaattaaggtcttcttttgcaagtataatgacccaatatatgttaagatggaaaagctggagattatgataaagcttgcctctgacagaaacatagatcaggttctattggaattcaaagagtatgccacagaggtggatgttgactttgtccgcaaagctgttcgtgctattggaagatgtgcaattaagttggagagagctgctgaaaggtgtatcagtgttttgcttgagctgattaagataaaggttaattatgttgtgcaggaggctataattgttattaaggacatcttcaggcgctaccctaatacgtatgagtcgatcatcgcaacactctgtgaaagcctagacaccttagatgaaccagaggctaaggcatcaatgatttggattattggagaatatgctgaaaggattgacaatgctgacgaacttcttgagagcttcttggaaacattcccagaagaaccagcattagttcaattgcagttactaacggcaactgttaagttgttccttaaaaagccaactgaggggcctcaacagatgatacaggctgttctcaataatgcaacagttgaaacagacaatcctgatttgcgcgaccgagcttatatatactggcgacttctttctactgatcctgaggcagctaaagatgtagttttggcagagaaacctgtgatcagcgatgattccaaccagcttgattcttctctcctagatgatctgctagccaatatttctaccctttcatcagtttatcacaagcctccagaagcatttgttagccgcgttaaaacagctcctagggctgatgatgaggagtttgctgatacagctgaaacaggatattcggagtcaccatctcagggtgttgatggggcatcaccttcctctagtgctggcacttcttctaatgttccagtgaagcagccagcagcaccagctgctcctgctccaatgccagacctccttggtgatttgatgggtatggataactccattgttcctgttgatgaaccaacagcaccttcaggccctccactacctgttttgttgccatcaaccactggccaaggactgcagatcagcgcacaactagtgcggcgtgatggccaaatattctatgatatatcttttgataatggcactcaaactgtgctagatggattcatgattcagtttaacaaaaatacctttggccttgcagccggtggtgcacttcaggtctctccactgcaacctgggacctcggccaggacgctgctacctatggtggcattccagaatctctctcctggagcgccaagctcactgctgcaggttgcggtgaagaataatcagcaacctgtgtggtacttcaatgacaaaatccctatgcatgccttctttggtgaagatggcaaaatggaacgaacaagttttcttgaggcctggaaatctttacctgatgacaacgaattttcgaaagagttcccctcttctgtcgtcagcagcatagatgcgaccgttgagcaccttgcagcatcaaatgtgttctttatcgccaagaggaaaaactcaaacaaggatgttctgtacatgtctgcaaagattccgcgtggaatccccttcctgatagagcttactgctgcagtcggtgttcctggcgtgaagtgtgcggtcaaaactccaaacaaggagatggtggctctcttcttcgaagccatggagtctcttctcaagtga</cdnaseq>

Protein Sequence

<aaseq>HDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGK DVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIR ALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGF LEALKDLISDNNPMVVANAVAALAEIQDSSTRPIFEITSHTLSKLLTALNECTEWGQV FILDSLSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKIILLQMELITSTDVVRN LCKKMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKME KLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVL LELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIG EYAERIDNADELLESFLETFPEEPALVQLQLLTATVKLFLKKPTEGPQQMIQAVLNNA TVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDSSLLDDLLANIS TLSSVYHKPPEAFVSRVKTAPRADDEEFADTAETGYSESPSQGVDGASPSSSAGTSSN VPVKQPAAPAAPAPMPDLLGDLMGMDNSIVPVDEPTAPSGPPLPVLLPSTTGQGLQIS AQLVRRDGQIFYDISFDNGTQTVLDGFMIQFNKNTFGLAAGGALQVSPLQPGTSARTL LPMVAFQNLSPGAPSSLLQVAVKNNQQPVWYFNDKIPMHAFFGEDGKMERTSFLEAWK SLPDDNEFSKEFPSSVVSSIDATVEHLAASNVFFIAKRKNSNKDVLYMSAKIPRGIPF LIELTAAVGVPGVKCAVKTPNKEMVALFFEAMESLLK</aaseq>

Gene Sequence

<dnaseqindica>5481..5777#5144..5347#4870..5059#4361..4752#4179..4271#3702..3881#3567..3630#3231..3442#2867..2959#2603..2782#2074..2209#1736..1986#1533..1646#1211..1408#1..78#cacgactccaagtacttctccaccaccaagaagggggagatccccgagctcaaggaggagctcaactcccagtacaaggtcaaccaacgcaccccctcccccgtctctccggtctccgtagcttgctttccccgtgcctgtggggggtcggttcgttccggatccagatctgggctgggcgcggcgatcgctcgtagatctgcgggttttctgttggttttgtcgcggggttcggagggctcagatttcggtggcgtggcctggccgaagaatgaattgtggtttgcaagttatgccgctggattgggctgcctgtcgttgcttgcagcggcagatgaaaccgtgaatggactgaattccctgatccatttcgtagcttctactggaaggagttgatctgaatggctttgattgtttaatgcgtagtcagatgaacaagctggaccttcataagacagaaggattgccccaatgcgcatatgtttacctcatacgtcactagggaatataattacatgcttttagttgccaatacttatattaacactgaaaacaagaatgttgtggaacttacacatcttgctgtcgaaacatttgcatgggctttatccttcattcatattctgtgtgtgaatgattgtgcacagaacagtattaacattgaaatgcacatttcgcatgtatgtttgaaatgcatattgtttgctaaaaaatgaaagatgaaacgtatccactagatcactgctacaaaccagggagataaataaacatattgctatttgggataaatcatttctgcatgattgtgctaattacaaaagcacacacttatgcttcattatgatattagtcgagagaggaagtgtggtatgtagtcagtagtggattgagatcctctgcagtcactgcactgtgcctttgtcactgacatgtgggcccattgatctccaggcctacatgtcagtgacaaaggcacgatgcagtcgactgtagaggatcctgatccgtctgtagcaggacaaatcggatcatgtgttcagtaattcagtacatttacagtgataccaaaaaaatattgtacttgcatacaggaacaaaattatggttctaaagttttcacaccaagttcttgtttattttgacattcagcaagtaagttgccttttgcaatttccgatatctgatttattgttggaaatatgttctgcaggataagagaaaagatgctgtcaagaaagttatcgctgctatgactgttggaaaagatgtttcatctttgtttaccgacgttgtgaactgcatgcagactgagaacttggagctgaagaaactagtatatttatatctgattaactatgccaaaagtcaacctgaccttgccatacttgctgtaaacacatttgttaaggtaataaactatagccatacttgcaacaaactgttatgcggaaaaaaaatgctgatatggtacgttaaaacatgaccttttcatagaaactaataagatgattcatgaaatgaaacttttgcaggattcacaagatccaaatccactgattcgtgctttagctgtgaggacaatgggttgcatccgtgtggacaaaatcacagagtatctctgtgatcctcttcaaagatgcctcaaggttttttttctttttgttgtttctagaacttttcagtcaagttgacctcttctatctaagtctatatttggctcttgaattgcacacaggatgatgatccgtatgtacggaagactgcagctatttgtgttgctaagctttatgatataaatgctgagctagttgaggacagaggattcctagaggcccttaaagacttaatatctgacaataatcctatggtagttgccaatgctgttgctgcgcttgcagagattcaggacagcagtactcgtccaatctttgaaatcaccagtcatacgctgtcaaagcttctgactgctctgaatgaatgcacagagtacgatgcaacttttgatgtattgagttttgaacctatctggatattaaaaattcagtccacttaacatatttggtgtatttgcagatggggccaggtttttattttggattctctgtcaaggtacaaagcagcagatgccagggaagcagaaaatatagtggaacgggttacaccccgtctgcaacatgcaaattgtgctgttgttctctctgctgtaaaggtaaattattacctgattcgcttgcattagaaaagacagttgttttagacaggtttttgtgcagtctgtacagtttctatgtggtaaccatatatcgtaatatcatcatagtattgagtatttgaatacgtacctgtaaggcttttttagattattattggtattgtgaagtcctcagtacataggtagcagaatggatttatttttttttctgaggagcaaacaaattaaggaattaatgcatggcgaaatcatcagcagcatttactgtttgttttttatttaaatgtgttcttttccattcacgtgatgctttacctattgtagtgttgtctatctccttttacaccagatggaaacttttgttgatgctatactttttcctgtgtgtagataatccttttacaaatggagctcattactagcacagatgttgtccgtaatctctgtaagaaaatggcaccccctcttgttacgcttttgtcagcagaacctgagattcagtatgtagcgttaaggaacattaatctgattgttcagaaaaggcctactatacttgcacatgaaattaaggtgatatattttcttcctcatctgagccactcatttccagtaacgcaaatgtgttactgacccaacaggctgttcttgcaacaggtcttcttttgcaagtataatgacccaatatatgttaagatggaaaagctggagattatgataaagcttgcctctgacagaaacatagatcaggtaaaaaatctgctgttttatattattattgtgtccagcgcatgttagttgcagtgaaagatttccttaactaaatgtttttctgcttttgtatggtctcatgtctaccagaagtgcttttgtattgttggaagaaaggctaaacaattattatatcagtttcaaaaattggattaacttgccaaccatgttgaatgtcttactccttgtggagcagatggtttcttttctgtaaattttgttcaagaagctaacagagctccttctataggttctattggaattcaaagagtatgccacagaggtggatgttgactttgtccgcaaagctgttcgtgctattggaagatgtgcaattaagttggagagagctgctgaaaggtgtatcagtgttttgcttgagctgattaagataaaggttaattatgttgtgcaggaggctataattgttattaaggacatcttcaggcgctaccctaatacgtgagtactgtggcatgacagatcaatgttctatattatgtaacaaaggaactcttcaatttttttattgtttttgctcaagaattgcatctataaaactaactgttttcttgccaaaatgcaggtatgagtcgatcatcgcaacactctgtgaaagcctagacaccttagatgaaccagaggctaaggtattattctatgaaaactgtctaggtaatctattgcatttttgtgcaattacatgtttatttttctccaggcatcaatgatttggattattggagaatatgctgaaaggattgacaatgctgacgaacttcttgagagcttcttggaaacattcccagaagaaccagcattagttcaattgcagttactaacggcaactgttaagttgttccttaaaaagccaactgaggggcctcaacagatgatacaggttgcaattctcatctggttatttgtatgtttgtgcacgtggtaatgcttagaggttgccgagcgcggaatgatttttgtcttggtgtggatttgcctaaaaaatagtggttagactcacggttgtgtgttgatgaaaaggaataatttagacacatgttttgaactgattgatcaatttatgcaatgaacagtttcttcttccaataagcatgattagcctgccattagttctttatttgtttattgtaacaaagaatctgttcactgtctaatttgcaataactttatcatgtaggctgttctcaataatgcaacagttgaaacagacaatcctgatttgcgcgaccgagcttatatatactggcgacttctttctactgatcctgaggtatcatatcataacccctcacccttacccttattcaatgcttggttaaatagcactcttaccatttatatatgtttggcgtcctgcaggcagctaaagatgtagttttggcagagaaacctgtgatcagcgatgattccaaccagcttgattcttctctcctagatgatctgctagccaatatttctaccctttcatcagtttatcacaagcctccagaagcatttgttagccgcgttaaaacagctcctagggctgatgatgaggagtttgctgatacagctgaaacaggatattcggagtcaccatctcagggtgttgatggggcatcaccttcctctagtgctggcacttcttctaatgttccagtgaagcagccagcagcaccagctgctcctgctccaatgccagacctccttggtgatttgatgggtatggataactccattgttcctgttgatgaaccaacagcaccttcagggttagtatatttttgtggtttttgctaaggtgtctcgtggcatattcatttaatcattttgtatgactaggacaggtttttgatcatatcatcttttcttgttcttcccttttgcagccctccactacctgttttgttgccatcaaccactggccaaggactgcagatcagcgcacaactagtgcggcgtgatggccaaatattctatgatatatcttttgataatggcactcaaactgtgctagatggattcatgattcagtttaacaaaaatacctttggccttgcagccggtggtgcacttcaggtaccagctatatattataagtataaaacattctttttgaaattcaattacatgtactgaacgtggtgttattctatgaataaggtctctccactgcaacctgggacctcggccaggacgctgctacctatggtggcattccagaatctctctcctggagcgccaagctcactgctgcaggttgcggtgaagaataatcagcaacctgtgtggtacttcaatgacaaaatccctatgcatgccttctttggtgaagatggcaaaatggaacgaacaagttttcttgaggtaaaaacgctaacatgtattatattgcattattcacaacagtagtcaatttaattaactcaatgaatttctgtttcttggattgccccggattgtttagagtttctgaacaaatctcatgattctcttgcaggcctggaaatctttacctgatgacaacgaattttcgaaagagttcccctcttctgtcgtcagcagcatagatgcgaccgttgagcaccttgcagcatcaaatgtgttctttatcgccaagaggaaaaactcaaacaaggatgttctgtacatgtctgcaaagattccgcgtggaatccccttcctgatagagcttactgctgcagtcggtgttcctggcgtgaagtgtgcggtcaaaactccaaacaaggagatggtggctctcttcttcgaagccatggagtctcttctcaagtgatacaaaattgaaggatcattgttccttccaaattgatcagttcatgagctattgtaggtttggatgcggcgttgtttcacaggagctggtgtgaattgtatttgttgttctttgtattagattactgtatttaaactgctagtttcctggtttcaaagttttttcacgacgaacactcgacatggccattttgtctgcgtaatttgtatatctcggacctgaacctcttttcatgccatagcatatgaaatataagtagcttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0355600, RefSeq:Os03g0355600