Os03g0386000

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Revision as of 12:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0386000| Description = WD40 repeat-like domain containing protein| Version = NM_001056789.2 GI:297601011 GeneID:4332995| Length = 5384 bp| ...")
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Gene Name

Os03g0386000

Description

WD40 repeat-like domain containing protein

Version

NM_001056789.2 GI:297601011 GeneID:4332995

Length

5384 bp

Definition

Oryza sativa Japonica Group Os03g0386000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:15880476..15885859

Sequence Coding Region

15881004..15881044,15882287..15882410,15882507..15882593,15883897..15884031,15884121..15884225
,15884317..15884408,15884497..15884602,15884701..15884787,15884891..15885322

Expression

GEO Profiles:Os03g0386000

Genome Context

<gbrowseImage1> name=NC_008396:15880476..15885859 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:15880476..15885859 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttccacacctccgccgccacttcagcctcccagacgaacaagcagatggacgataccgtgggaacggttgaattatagcaggaatcagtatcgcgagatgagactaaggcaatataagaattatgagaaccttactatgccgcgtgatggactagaaaaggaatgcaaacaagtggagagaaaagacacattctatgattttcatttgaatacaagacttgtcaagtcaacaatagttcattttcagctgaggaacctgctgtgggctacttccaagcatgacgtgtatctgatgcagaactactctgtcatgcactggtcttccctgctccagagaggaaaggaagtgctcaatgtcgcgggccaactcgctccctctcagaatgtccggggagctatgccgttgtcgcgggtgcagatcagtaccatggcggtgaaaggcaacctcatggtggccggtggtttccagggtgaactcatctgcaagtatgttgataaacctggagtggcgttttgtacgaatctgaccgggaacaacaattccatcacgaatgccgtggacatctaccaggcaccaaatggcggtactcgaattacgaccgcgaacaacgactgcgtagtcagaactttcgacaccgagagattcagcctcattagccactttgcctttccatggtcggtcaataatacgtcggtgagccctgacggcaagctgctcgcggttcttggtgacagctccgactgcctgatcgccgattcacaatctggcaaggaaatggcgaggctgaagggtcacctggactactcgttctcgtcggcgtggcaccccgacggccgtgtggtcgccacggggaaccaggacaggacgtgccgggtgtgggacgtgcgcaacatgtcgcggtcggtggcggtgctggagggccggatcggcgccgtcagggggctccggtactcgccggacggccgcttcctcgccgcgtcggagcccgccgacttcgtccacgtctacgacgccgccgcgggctacgccgacgcgcaggagatcgacctgttcggggagatcgccggcgtcgcgttcagccccgccgggaataatggcggcggcggggaggcgctgttcgtcagcatcgccgaccgcacgtacggcagcctgctcgagttccaccggcgccgccgccatggctacctggactgctacgtctga</cdnaseq>

Protein Sequence

<aaseq>MASTPPPPLQPPRRTSRWTIPWERLNYSRNQYREMRLRQYKNYE NLTMPRDGLEKECKQVERKDTFYDFHLNTRLVKSTIVHFQLRNLLWATSKHDVYLMQN YSVMHWSSLLQRGKEVLNVAGQLAPSQNVRGAMPLSRVQISTMAVKGNLMVAGGFQGE LICKYVDKPGVAFCTNLTGNNNSITNAVDIYQAPNGGTRITTANNDCVVRTFDTERFS LISHFAFPWSVNNTSVSPDGKLLAVLGDSSDCLIADSQSGKEMARLKGHLDYSFSSAW HPDGRVVATGNQDRTCRVWDVRNMSRSVAVLEGRIGAVRGLRYSPDGRFLAASEPADF VHVYDAAAGYADAQEIDLFGEIAGVAFSPAGNNGGGGEALFVSIADRTYGSLLEFHRR RRHGYLDCYV</aaseq>

Gene Sequence

<dnaseqindica>529..569#1812..1935#2032..2118#3422..3556#3646..3750#3842..3933#4022..4127#4226..4312#4416..4847#acttttcttttacgcttctcccctcctccctactactgctggtgactagttctactaccactcaaaaacaacaaacatagctagtgatctgatttgcattcaggtcgagtgaacaacccaaccagcaaaagatcggaggaacagaagggtttggttggttgttcggaggaaggagcatttcgtttcgtttcgggtgagctgtcgttttttctcacgctctcctcctcctccttgtttgttacagttcacgctgttcttgattccccctttggatttcacctcatcaatctcgccttccctttccttttgcatcgagttaatttccagttccaacagatggagatactgtatataaacacacacgtttaattatttgctgaatctcccctaatcattcctcttcttttggcagattgattcccgggtttaacatattatcatccatggcccacgacttgcacgacgacctggagttcgtctccggcgacgacgacgactactacttggagttcgatcacgatcccggccatggcttccacacctccgccgccacttcagcctcccagacggtatgggttaattccgacttcaaattaattatttctatatttgtttgtacgacccaatatttatgttgatcactaacaatcctacaagataaactgttacattacctaaagaaaaaaaataaaatgattaagggggaaaaatatcttttgagttggtgcgccgttacatcaacttagtttgtccatatatatgtctgacaaaccatggtcacaaggttttttttttccagtgaaaattcatgtcttcttgtttacatagcgtttgccttagtttgtgcaatttctggttattcatggacgtttcaggtaaagatgcaatcaaaaagcatgtctgacactatggtcctcacatattcataacgtttgaaacagattattcacaggattcttgtcacggattatctacttaattataacgatatatttaatacttttagaaataaacttaacaaatagcttaaacaagtagtggtctagaaagatgttattttttacaggcatggatcaaattatccgcggtactaatctagtgaagtagctgtaaagaacgtagtaattgataattttatatcctttgttacaaaagtaacatagggaaccacacttttgggatgtttgggggttttttttctaccacaaataacctggcttgataatgaacagaaatgagagaaattatcaattgactgttgggagagaaccctggtagctgctacacgtccagagcaacatacttttgcactggttgtaccactaatctttctttgttggaaaattatacccctttctactacagtatatataaatatatggtttattggatgaaaaaagatgggagattcagttcattactgccagtgggatgtcattgaatttaggggaaaagaaacaaattaaatgaagcaccaaagactattctcggattaaattaatacaaaattatataatgttaaggtattccactcataattcaatgtattacatattacattatactgctcaatctaatatggtttgactggtcaaaagaaaacgagagagggaattctacagtctttgatcagagaattacatatatatatatattcgcgtcagctataccaagaaaattgccagtttttgcaaagattagaaaaaaatggtcatgccagaaaagcagagttccatcttccccaaaagatctccgattttgttttaccaaaactgcataaaactgcagctaataggtgctctctatttcagaacaagcagatggacgataccgtgggaacggttgaattatagcaggaatcagtatcgcgagatgagactaaggcaatataagaattatgagaaccttactatgccgcgtgatggactagaaaaggtgagattcttgtgtttttctacttaaaacaatactcttcctcttgcacttaaatgtttttggttacatatatatattattcatttgtttctctaggaatgcaaacaagtggagagaaaagacacattctatgattttcatttgaatacaagacttgtcaagtcaacaatagttcattttcaggtaccgatttcctctgacctgtcattcagatacttgtatgcataagaaagctggcgtatgcatttgggtgaccgctttatagaaagttttgaattaacaatgctagttaactttatgatttgtttgcatagcaccctatgaatgctatactatattttgttcatcaatttttgaaaaatacataactagataccaacagtctaatttctaaccacaattatttatggtaatagaaatggaagaagtttccctctctttcttaaataaaaaagtccacaagcttaaataaaaattcatctatgtggtatcagcatctatcattattatgcacatgatgtttatctagcttattcttaggtttgttatgattaacaaatagtctccaaaatttcgtactgttatgcataccatttgcatgtgcacaacctgcatcactatattctgtttaataaagtgtactgtctgtacctttctgcccttttgtttatatagacataatatttactgcaggttgtatgatgagttgaatcaaaatatgctaaactgagatagttttcgatacgagcaaattaacccatgatattagggcagatgcaatatcttacttcccaggtggatggtcattctcagcagtcggcgcaattatacacgtggaatatggtatgataggatgttttatgataggcagaactgttaaataagtcacctctgagttttgttgcaggttggagatgagagttcagaaatacattatgcatcatcatttttggttgtactttatgcattaatagtgtatgaagattgctcatcttgtgccgtgtatgttgtttaactgcatgttcttgatttgattttgttgtgttgctaactgttctgggtagctaaaaactactaagtgatactaaattcttaattaaaaaataacagtgaacagtccattttatcctttacccattaatagctcgatagctccttgctgaacataaaggataacttttggttggcagtagcatctggatgtctgcaaattataatatacttgccagaaactgattcttctagtcttgtctgcttactggcactgctctagaggttctgtgaggaggcacttggtactagtacattagaggaattgaaaaagaaaattcttatttctgaaccatttaggtagtgccagttgaaatttttactgtaaaaacttgtcattgacttgcacgatcacatcttgtagtaccatttgcattctatcctatcaattcctctgaaaatgtaaatgaccatgttgttgtggacatctctgcagctgaggaacctgctgtgggctacttccaagcatgacgtgtatctgatgcagaactactctgtcatgcactggtcttccctgctccagagaggaaaggaagtgctcaatgtcgcgggccaactcgctccctctcaggtttgcgccttcggctttgcgacaagtcggttagcattttagaccgtgcgccacaagttctctaacttgtgccactacctgctattcagaatgtccggggagctatgccgttgtcgcgggtgcagatcagtaccatggcggtgaaaggcaacctcatggtggccggtggtttccagggtgaactcatctgcaaggtatgagcaactgaacagtgtacactgcatacttgtgggtgtttctcttgtaagtatctttacttaagttcactgcttcaccttatgtcagtatgttgataaacctggagtggcgttttgtacgaatctgaccgggaacaacaattccatcacgaatgccgtggacatctaccaggcaccaaagtaagcaaaccatcacaattctgggtttcagagcgagttgtaaatggtttaattggtaactgaattttatgatatttttgaaattcagtggcggtactcgaattacgaccgcgaacaacgactgcgtagtcagaactttcgacaccgagagattcagcctcattagccactttgcctttccatggtcggtcaatgtgagtatcgatcctgtactctgaaattgctgaagaatttgtgtactgttcagttgctgatccatgatccatgagctgaattaatttttacattgcagaatacgtcggtgagccctgacggcaagctgctcgcggttcttggtgacagctccgactgcctgatcgccgattcacaatctggcaaggtacatgcagaattttgctctatgttcgcttccaaattcagaaatcaatttcagaaatcagctctgaaatgctgtgcgtgttcttgtgtcatcttttgggaaggaaatggcgaggctgaagggtcacctggactactcgttctcgtcggcgtggcaccccgacggccgtgtggtcgccacggggaaccaggacaggacgtgccgggtgtgggacgtgcgcaacatgtcgcggtcggtggcggtgctggagggccggatcggcgccgtcagggggctccggtactcgccggacggccgcttcctcgccgcgtcggagcccgccgacttcgtccacgtctacgacgccgccgcgggctacgccgacgcgcaggagatcgacctgttcggggagatcgccggcgtcgcgttcagccccgccgggaataatggcggcggcggggaggcgctgttcgtcagcatcgccgaccgcacgtacggcagcctgctcgagttccaccggcgccgccgccatggctacctggactgctacgtctgatcgccgccgccgccgccatgtccgccgcggcagtgcatcgcgtgcaaagctgtaagctttgaaaaggtgcaacgcaacacggcgttttcgcgcgctttttttcttgcgctgccgcgagccgagacgtcagttgttttttttctttatttaaaacttttggcacgttgctgttttacattgtattttttttgtattgtacggtgcagtgtagtgctacatagtacagtatatatttggaggcggatataaccttagagccaaattagagccaaatgaccgtctataaaaatataaatcaaggtgaaacataccgtccgtctgtgaaaataaatataaatagactgggatagactttgtagctttgtgttgtacgaaagttcattaatttggtaatgtacgtaaagaacacttttgatgctttacagttagtgttgactgcgtgctaatggagactggattattcatgccacgcttctgtaattgatttctccagatattggatcagcataaccttctatatactgtttaatttatccg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0386000, RefSeq:Os03g0386000