Os03g0388000

From RiceWiki
Revision as of 12:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0388000| Description = Similar to Splicing factor SC35| Version = NM_001056798.1 GI:115453324 GeneID:4333005| Length = 2964 bp| Definition...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0388000

Description

Similar to Splicing factor SC35

Version

NM_001056798.1 GI:115453324 GeneID:4333005

Length

2964 bp

Definition

Oryza sativa Japonica Group Os03g0388000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16026263..16029226

Sequence Coding Region

16026729..16026774,16026910..16027107,16027695..16027766,16028509..16028575,16028687..16028766
,16028874..16028952,16029053..16029128

Expression

GEO Profiles:Os03g0388000

Genome Context

<gbrowseImage1> name=NC_008396:16026263..16029226 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16026263..16029226 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgtcctcaacgtctccttccgcacgacggccgacgacctcctcgcgctcttcgaccgctgcggcgaggtcctcgacatccgcatcccccgcgaccgcaggactggggattcgagagggttcgcgttcgtgaggtacaagtacgaggacgaggcgcagaaggccgtcgataagctcgacgggaggacggtggatgggagggatatcatggtgcagttcgccaagtacggcccaaatgctgaaagaattcataaggggaggattgtagaagagatttcgaagccaagaggccgatccagaagtcctagtccaaaacggaggtatcgtgctgactaccgagacaggggctaccgtgatgactatcgggacagacactatcgtgatgactatcaggacagggagtataggagaagccgaagcatagagaggtatgaacgtgagaggtatcaagaaaaaggctatcgtcgcaggagccggagcattagccctgattatgacaggaggcatcgcaagaatgggcccagggatgaacgttctccacgctctcgaagccctttgacctag</cdnaseq>

Protein Sequence

<aaseq>MSRLGRYGPPAVRDSYSLLVLNVSFRTTADDLLALFDRCGEVLD IRIPRDRRTGDSRGFAFVRYKYEDEAQKAVDKLDGRTVDGRDIMVQFAKYGPNAERIH KGRIVEEISKPRGRSRSPSPKRRYRADYRDRGYRDDYRDRHYRDDYQDREYRRSRSIE RYERERYQEKGYRRRSRSISPDYDRRHRKNGPRDERSPRSRSPLT</aaseq>

Gene Sequence

<dnaseqindica>2453..2498#2120..2317#1461..1532#652..718#461..540#275..353#99..174#aacgaaagcgccgcccgccgccgcgtcatctcttctcttctgttaaaccccctccgccaccgtcgctgccgccgccgccgcctccggagcccgagacgatgtcgcgcctcggccgctacggcccaccggcggtccgcgactcctactccctcctcgtcctcaacgtctccttccgtaagtgcactgcccccgtcttccctcctcctccgcctcgccgccgttcttgctcatgccatgtatgtgtcaatgccgccgccgccgcggacgcccgcaggcacgacggccgacgacctcctcgcgctcttcgaccgctgcggcgaggtcctcgacatccgcatcccccgcgaccgcaggtgaaacaccaccaccacctcgacctctccagttgggaggaggtgtagttttttttattagggatttggggatggatttcaatttcgctcatggcccgtgtgtgcaggactggggattcgagagggttcgcgttcgtgaggtacaagtacgaggacgaggcgcagaaggccgtcgataagctcgacggtgagtctaaggaaaaatatatatattttgtactatgtttggtttaccgagataattctcatactagtgtgtttcaccgtgaaattttcctcttttttatttcgggtacagggaggacggtggatgggagggatatcatggtgcagttcgccaagtacggcccaaatgctgaaagaatgtaggaattccccccaacgtttttgtccgtgtgtcgattgcgctactgcttgttgaatctgccaacctttctgatgccttgctgtgctggtgtttctaaaattctgcgacggttattagttcttgattgcatacagtagcaaccattgttgttatatagaatctgagtgttgccgtgttgggctgcacgtgcaatgccaaacaaatttcctgattttctgcagtggatcaaagaagtatctcggttaagcgtgtatagcatgtaatgctgtgacaagttcactgcgttttggatgtttctttgacgatagtcagatgttaaaccatatgcctaataatttgatttagttgccagtcttatcttatggtgtcttttctcagcttttggtcatttctcattgacagcttttacactctttttttctttttctttttctctctcttttttttggtgggatagaacttttataattgggccctgctttaccaaacaaaaatagtgtaatgaaaatttgggtgctctgcaacataccatatctggtcaagaagtaccatttcagtcttcaaagcaatactgacatcttttacactaaatttagcatgggtactttttttctgccagaaagaaaatatgttgtaggaaattatcggttacaattctacacaagaatgtgcatgtatgaaacactcagaagtcaaaacgatttcacacattacatttgcctttctgtttgtgtttgcagtcataaggggaggattgtagaagagatttcgaagccaagaggccgatccagaagtcctagtccaaaacggaggtaaattatgtagagcagtccatttggattgtacaaatggcatatagtttgatgctcagcagatgagatcaagagggtggcctgcagcctggtcctcattgggcttggctgttttattaggaagtttgcttgtttgttgggctagatacatgccacatgggttctaagtgcgtgtttgatatagttaaattgtaccaatatatatcattgtaactaggtaattgaccagatttatcaggatcgtgtcccacggtataaactatggcacatgaaggacacacatccctcaatttcccatgcttttaagtcctgcatcccaagtccctgtcccttgagtccttgacctgatcaaccgaccctgggctcatggtgactttggatatagtcgtacagtcatgacaatacattctattaatttccatgaatatatacagtaactaaaattacagttgatctatgtctcttcagttgaaacagtaactcatgtgctgaaattactagacaaagttattgaatttggatgggttctttttcaaatttctaaatttgctattcctattttgtgatggtgctcattttttgtgaaggtatcgtgctgactaccgagacaggggctaccgtgatgactatcgggacagacactatcgtgatgactatcaggacagggagtataggagaagccgaagcatagagaggtatgaacgtgagaggtatcaagaaaaaggctatcgtcgcaggagccggagcattagccctgattatgacaggaggcatcgcaagaatgggtatgcctgtggagatgctctccctgtttcgtttttgtcatacttgactgcatccatgttcaaactataaatcatttcatcaattacgattgacagtcaaagcagaagttactcacttacagcttctcctagcaggcccagggatgaacgttctccacgctctcgaagccctttgacctagctgaatgccctacacaatatatcatagatagcttgaggtttctaaacagttctcattacctctaatgttcttggccttgtccaacgcgttactgataaagctgccgctatcttgtaggatgaatagaccggagccttgtctgcttgcttaggacgaatactgataatggtgtagtgttcaacatggctgcatttgagcatccaaggctgcttccttgttaacaagacagcaccttttgagaacaatgtagatttctgttattttttgtatctactttatttcttatatccatgtcagtgctattttttccctcaattgagtgcttattatagactgtaatttgcatgatggagcgaagaggtgttggttgataattgctccgtatgcaagttgctgtcatgatcttgcggttgacggaccatgttgatgctaaacaccttgatgatgattttggtgattctgaggc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0388000, RefSeq:Os03g0388000