Os03g0390700

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Revision as of 12:41, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0390700| Description = Similar to Transthyretin-like protein| Version = NM_001056812.1 GI:115453352 GeneID:4333020| Length = 3193 bp| Defi...")
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Gene Name

Os03g0390700

Description

Similar to Transthyretin-like protein

Version

NM_001056812.1 GI:115453352 GeneID:4333020

Length

3193 bp

Definition

Oryza sativa Japonica Group Os03g0390700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16199875..16203067

Sequence Coding Region

16199929..16200075,16200194..16200267,16200856..16200913,16200997..16201098,16201407..16201566
,16202378..16202841

Expression

GEO Profiles:Os03g0390700

Genome Context

<gbrowseImage1> name=NC_008396:16199875..16203067 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16199875..16203067 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccacgacgcgggggcagctgcccgtcgaggacgtgctgcgcgtgaacgggagccggcgattcgccgccgcgctggccgccgcctcccccttcgcctccctcgccgacgccctcctcgccgcccgccgcatctggctcaacgaggtggacgtcaacgggtggctggaggccttcgccgcgcacccggccatcggcaccacctcctcctccgcccccaagtggtgcaaggaggagcaatcagcagcgcttgcaactgccactgattcgaccgcgcaggagttggcagattggaatgccaggtatagggagaagtttgggtttgtgttcatgatatgcgcgtctgggaggactgcccctgaggtcttagcggagcttaagaggcgctatgaaaataggccaattgttgaacttgagatcgcagcacaggaagaactgaagataactgaactgcgtcttgcaaagctttttgcatcagagcctgttgcccccccttcttcaacggttggaggtcctactagccaatcggataaagcagcagaccgcatgcggattattggagcacatcttggatctcacacccagcattctgccaataaagctcctgaaattacaggtagctccaaccgaactcgccctccgatcacaacccatgttttggatgtcgctcgtggatcgccagcatcaggaattgaagttcacctagagatgtggaaggatgcatcaacacccccatcattcaacaacaaagatttcaatggatgggcaaccctgggctcatcggttacgaacaacgatggccgcagcggtcaactgatggacattgtcaataacgtcgctcctggtttctaccgcataagtttcaacaccagcaagtatgcaccttcagggttcttcccttatgtgagcatcatatttgagataaaaaagaaccagacgaccgagcatttccatgtccctctgttgcattctcctttttcattcaccacttaccgtggcagttaa</cdnaseq>

Protein Sequence

<aaseq>MATTRGQLPVEDVLRVNGSRRFAAALAAASPFASLADALLAARR IWLNEVDVNGWLEAFAAHPAIGTTSSSAPKWCKEEQSAALATATDSTAQELADWNARY REKFGFVFMICASGRTAPEVLAELKRRYENRPIVELEIAAQEELKITELRLAKLFASE PVAPPSSTVGGPTSQSDKAADRMRIIGAHLGSHTQHSANKAPEITGSSNRTRPPITTH VLDVARGSPASGIEVHLEMWKDASTPPSFNNKDFNGWATLGSSVTNNDGRSGQLMDIV NNVAPGFYRISFNTSKYAPSGFFPYVSIIFEIKKNQTTEHFHVPLLHSPFSFTTYRGS </aaseq>

Gene Sequence

<dnaseqindica>55..201#320..393#982..1039#1123..1224#1533..1692#2504..2967#agtacgcccggagctcgcatcgcatcaccggctgagagagatcctaattccgagatggccacgacgcgggggcagctgcccgtcgaggacgtgctgcgcgtgaacgggagccggcgattcgccgccgcgctggccgccgcctcccccttcgcctccctcgccgacgccctcctcgccgcccgccgcatctggctcaacgaggtaggtattattatactcctacctttctaaccaccacatccccccgcggttgatgatgatgatgatgctcgctgctcatggctggatatggtttgttggcccgccgatcggatcgtaggtggacgtcaacgggtggctggaggccttcgccgcgcacccggccatcggcaccacctcctcctccgcccccaagtcggtgcctctctttccttcttcctttagtttttttagtggagtagtttttttttctttttgggtttgtttgttgtcgatctccactgtctgtcgccgagagcggattgatttgcttaagagctcctagaaggaaactccctcagccaagatgctttgctcaacttgttcaaatcatccatcctatggagaaattcactctgcggcgttatcagttttgacgaatagagagatctgaattatcaatgcccgtactggcttacaatacagagaggcatagccgcatagtacatgttcatggtgttctcaactaccttaatttacagacctctacaaccttacatattgtgccactaatgtaaggtggttcaagacgagtctagtctgatatataaaatcacactagccaaagccaataaacaaatgaataaagagaatcaggtagttttcatcaacaagtacacaagggtggacaagtagaaagtgcttaattggtggttgggagctcttgcattatttgagtgtatatgccctttaaaagctagtaccatggtaggaaaattttgatttgcttcgtgggggtattaggtggtgcaaggaggagcaatcagcagcgcttgcaactgccactgattcgaccgcgcaggtgctgcagctttctttgccatcattttcttgcatgttttacagtacttgcaggctcaatatgcttcttttcacctgctgtaggagttggcagattggaatgccaggtatagggagaagtttgggtttgtgttcatgatatgcgcgtctgggaggactgcccctgaggtcttagcggagcttaaggtctggatatgctcttctattacctgattagtattctgtgcttatttatctctttttaactagcgctcgtatgtttagatgattgttctctatgagtaatgacgaactgtgacctgtggaataacagtaaaatgagagccatagaagtaacactgtttctaagggatacacatgttaaatttatctctgacactgtttgctggataacctatttcttagcatgacaagcatttcatatacaactaagcttcatataatgacttcctttccattgttgaagttatcttattaccatcctgctctttcagaggcgctatgaaaataggccaattgttgaacttgagatcgcagcacaggaagaactgaagataactgaactgcgtcttgcaaagctttttgcatcagagcctgttgcccccccttcttcaacggttggaggtcctactagccaatcggataaagcagcaggtactgaaacagttttatctgctgttaataaatgcatgctctttattcaacatattcgaggattttccgtgtacctatccaatatacttatcccaatggtcctcattaagtttcttggattggtagttcccatgcccacatttattttttgactgagcagctgtgctgtgcatttttgggcttttcgcatatagtcttttccatgacgaaggctacactttgatgttttccatggtcatggttgcacctcataggttagtacatcattttttttctcagaaataagtcctgatatccaatactaaaggaactatattttttctgactctaaaaaagtaaaaaagaaatgcagttcacctagtattttggttcacttaatttgcagaaaaacgcactgtagtactgtatagattagtagttgcaaacttttttttctgatgttaatgagcaacctagtgttgacatgattacacgcagcaactttgcttactattgacctccgatccattttcttatctatatgtattatctcttggcatataaaactgtaactgaaaacaagaaatgaagtaattcatatgtggagtaaataagtaatgaactaactttacggaatgagcatatcctggaaaggcatctcctgggcatcgcttatcatcaatatttgaaagttgaactagctgcgacaattaacctgtacgttataattaacatcactttattttccttcgcatgttgtgttgtggaagtgtagcatactactaatggttttataattattctgctttcttaccattttattgttcaaaagaccgcatgcggattattggagcacatcttggatctcacacccagcattctgccaataaagctcctgaaattacaggtagctccaaccgaactcgccctccgatcacaacccatgttttggatgtcgctcgtggatcgccagcatcaggaattgaagttcacctagagatgtggaaggatgcatcaacacccccatcattcaacaacaaagatttcaatggatgggcaaccctgggctcatcggttacgaacaacgatggccgcagcggtcaactgatggacattgtcaataacgtcgctcctggtttctaccgcataagtttcaacaccagcaagtatgcaccttcagggttcttcccttatgtgagcatcatatttgagataaaaaagaaccagacgaccgagcatttccatgtccctctgttgcattctcctttttcattcaccacttaccgtggcagttaagttagcctgtccccaagtctgcgagatgctgcatattccatctgaaaagttcgtgtgtaatattcctcttggtagcaaaatgtcgggaaaacaagtttgctttggtagcaagggttgcctgtttatgtgcactgacattatgatgcaagaataaatttgatatactaaaatgtatacagaagcttgatgtctatagtactaaagtttcagtgcatggtttggtacg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0390700, RefSeq:Os03g0390700