Os03g0396900

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Revision as of 12:42, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0396900| Description = Similar to PIMT| Version = NM_001056834.1 GI:115453396 GeneID:4333042| Length = 6505 bp| Definition = Oryza sativa ...")
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Gene Name

Os03g0396900

Description

Similar to PIMT

Version

NM_001056834.1 GI:115453396 GeneID:4333042

Length

6505 bp

Definition

Oryza sativa Japonica Group Os03g0396900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:16589990..16596494

Sequence Coding Region

16590108..16590187,16590339..16590408,16591814..16591868,16592097..16592179,16592257..16593088
,16593422..16593524,16593597..16593736,16593887..16594118,16594441..16594576
,16595446..16595540,16595619..16595742,16595928..16596050

Expression

GEO Profiles:Os03g0396900

Genome Context

<gbrowseImage1> name=NC_008396:16589990..16596494 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:16589990..16596494 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgggggacgcggaggacctgccgccggcgataacgaagctggggcggcacttcaggctcacggaagcgcacatctgggatggctggtacgccgctggcgccgacgtgagccacaggagctggcactccgatgatatcgattccggcggctgttgtcaaacagataaagtccaaaacaagccaaccaaacagacagatgaaggcgatttgtttgttgaagatttagaattgtccaacctgatgggttctttggggcttcctgtttcattcagcacaagtaaagagaaaaagaatgcacccaataaggtaaagaagaatggaaggagagtctcctacgaagcagcaaatactctaatcgacgatgattcaaggacatgcacgggtactaaagaaactgaaagtattgttcagttgatggcttgtgtggagcaaactaacccatgcagttcatctaggatcactgtgggttacagtgaagtctgccaaggtgatatcgagaagatggacaaagacattgtttatgctaatgaacaggaagagtctggtgatctctgctcttctaaagtattatcaagtagcaaagctgaagataactatgaacatgagacttgtcagtttcatgctaacatgaacaacccagtaaaagcagattctcctgttcgagaaaatgaaactgcagaagttgtcttgaaattgaacaaggagatgctggggcaaaactctgttgataatgaatctagattctcctctgctgagatttgtatggaaggaggattatcaacaataaaagatcaactatctggggaaactccttcaacatcccatgataataaggatgttgatcatgaaacttgtctaagttcagcagagccatctcctgtggataataatcctgcccaaaagtctgacagcagcttttacttcgaatatggtgattggagagtcctgtgggatccattctacagtcggtattacttctataacatcttgacacaggagtctacatggtatcctcctcacggattggaggattttgcatcacattctaacacatgtatacctgaagacctggacgaatttggctcacaaaataaaagcacaccggcacaagaacatgatcaggctggtggtgacaagcatttggatgagcaggggcaagcttgttacagtgaattgagcaatttatcagatattcctgatggagagagaataaatcaatgtatggtaactttcaccgatgaagcacgccacactgataatattcatcatcagaatgatagttcaatgagtgaaatttcagagatgaatcaggagattggtcgtaccaaaaagaaaaagagagtaaggagatctaagtcatatcattcatgtcaagacttggcagggaacatctccaatgacattgccaagtactgggctcagcggtattcacttttctccctttttgatagtggtataaaaatggatgaagaaggatggttttcagtgacaccagagctcatcgcaaagcatcatgcatctcgcgttggtgccggcattgtgattgactgtttcacaggagttggcggaaatgccatccattttgccaacaagtgcaggcatgttatcgctattgatattgatccccaaaagattgattgcgcgcagcataatgcaactgtctatggagtacatgatcatatagacttcgttagaggtgattttattcatgtggcgcctcgtctgaagggagaaactgtttttatgtcgcctccttggggtggaccagactatgccaaagtagatgtatatgatatcaaaaccatgcttaagccttgtgatgggtattctctctttaaacttggtacatcaatcgcttcgagggtggtgatgtttcttcctcgtaacattgaccaaaatcaattggcagacatgtgcctgtcagttgatcctccttgggcagttgaggtagagaagaatttcctcaatgggaagctgaaagccataacagcatattttgagcagcaggatggttcagatgtgcaggacgctagtgatacaaacccccaaaacccagaataccatgcttag</cdnaseq>

Protein Sequence

<aaseq>MPGDAEDLPPAITKLGRHFRLTEAHIWDGWYAAGADVSHRSWHS DDIDSGGCCQTDKVQNKPTKQTDEGDLFVEDLELSNLMGSLGLPVSFSTSKEKKNAPN KVKKNGRRVSYEAANTLIDDDSRTCTGTKETESIVQLMACVEQTNPCSSSRITVGYSE VCQGDIEKMDKDIVYANEQEESGDLCSSKVLSSSKAEDNYEHETCQFHANMNNPVKAD SPVRENETAEVVLKLNKEMLGQNSVDNESRFSSAEICMEGGLSTIKDQLSGETPSTSH DNKDVDHETCLSSAEPSPVDNNPAQKSDSSFYFEYGDWRVLWDPFYSRYYFYNILTQE STWYPPHGLEDFASHSNTCIPEDLDEFGSQNKSTPAQEHDQAGGDKHLDEQGQACYSE LSNLSDIPDGERINQCMVTFTDEARHTDNIHHQNDSSMSEISEMNQEIGRTKKKKRVR RSKSYHSCQDLAGNISNDIAKYWAQRYSLFSLFDSGIKMDEEGWFSVTPELIAKHHAS RVGAGIVIDCFTGVGGNAIHFANKCRHVIAIDIDPQKIDCAQHNATVYGVHDHIDFVR GDFIHVAPRLKGETVFMSPPWGGPDYAKVDVYDIKTMLKPCDGYSLFKLGTSIASRVV MFLPRNIDQNQLADMCLSVDPPWAVEVEKNFLNGKLKAITAYFEQQDGSDVQDASDTN PQNPEYHA</aaseq>

Gene Sequence

<dnaseqindica>119..198#350..419#1825..1879#2108..2190#2268..3099#3433..3535#3608..3747#3898..4129#4452..4587#5457..5551#5630..5753#5939..6061#ccgacgcttttccccacccgacaaagccgccaactcccccctccgctctcctccggctcgccggcctcgccagtcggcagccgccgcctcttcccgcccctctaatctccggcgctcgatgccgggggacgcggaggacctgccgccggcgataacgaagctggggcggcacttcaggctcacggaagcgcacatctggtaagcccctctcccgccggagctctcctcctctccagcccagcttggttgttcggattttgtagggtttcggcatctcctctgttttctacaacttaatttgatgatgatgatgttgttgttgttgttgttgttgattcggtcgctgcagggatggctggtacgccgctggcgccgacgtgagccacaggagctggcactccgatgatatcgattccggcgtaagattcctatatttcgtcttgtgcttcttcggattcggatggtttgccttgcgttgagcgttgtcaaaatgaggcttatatgcttcgtaagcttgtccggtgtttgactaacattgctgagtaattagtttgttagaacaaatatggaggtttttgttaatctttggtcattttgaggtgtgggtaaattagatggatggactagaacatacttgaaattcaccagcggaaaatctcagctgcaggaggaacacgtctactgaatacttcttcagtgaacttctagtcaacacaataaatttgctttgcatttgtaaatattggaccctgttttacttttttgggaaagtattattggaggtttgctccaaaagagtgttttgttatgttaagtttgcccaacaatatttagcatagcaatagcatatatcacactttgtaggttgtagagaaggtggataagcatgataaaggttcacctaattttaataggggacgaatatgaacattgcaaaagggttcagcttggtgagtgagacaataaacatatgctctagaagtactatacaattatttgcttactaatacggtgctgcatgcaacactttgaattatggtaggacacataactcctagactcttatagcactgtttcatgagcaatattggtgaaatttagttatgtccttgctaattatctccatctttagtctttactgctagtaatatttgagttgctggtggttctggcttcaccttgaagagcttgcatcagttaaacattgtatgcatatatgtgtgacctggatgattttttgtgaaacatggaactatctatatcttgtgcgtatgactcattgactcatgacattattccctatggcttttatataggatgtatgaagttttccaatttaaggataattatttgtgcatggtggataatctcttatgattgctttagttttttgggggagggaaaatggaattttaagacgcacatctacatggggaactcaaagttttgtttgttcttgacaactttttgaatcatttacagaagattagttgtgatccacttagctaatgcattgatttctgatagcaatagttcattgttgatctaaacattaatggctggccttgcacttgaatttctgggaagaccagtcagtgaactgtgtcatggctagaatagaataccatcaggatacaattggttaaatattacatgtatttgtcatatgagccttttatctttttttattcctgacaaattttcaagtcttttatttaagtggaacaattcaaaatatttaaaattttaaatgctttgagatttgtgtcatgttgatttttagcttgtcatttataagcaatttgagaaccttcaattgtgcagggctgttgtcaaacagataaagtccaaaacaagccaaccaaacagacagatgaaggtaatatgtattcctttgcaatccattaatttatttacacgcttgttgttttctgtaatctccctgcttgtactatcagcttgcattataactcttgcacttcccacacacagcataaaaaaaataataaaagatcattatttcataatatagtgttaattttgtaagtttgcagcaatttcttatgatattgtttctgtgtttgtgatgcttctatggtatcaataggcgatttgtttgttgaagatttagaattgtccaacctgatgggttctttggggcttcctgtttcattcagcacaagtaaagaggtaagtgctcactgcactacttcactctcgactgctccccagatgattaatctgtagctcacccttcgtcattatagaaaaagaatgcacccaataaggtaaagaagaatggaaggagagtctcctacgaagcagcaaatactctaatcgacgatgattcaaggacatgcacgggtactaaagaaactgaaagtattgttcagttgatggcttgtgtggagcaaactaacccatgcagttcatctaggatcactgtgggttacagtgaagtctgccaaggtgatatcgagaagatggacaaagacattgtttatgctaatgaacaggaagagtctggtgatctctgctcttctaaagtattatcaagtagcaaagctgaagataactatgaacatgagacttgtcagtttcatgctaacatgaacaacccagtaaaagcagattctcctgttcgagaaaatgaaactgcagaagttgtcttgaaattgaacaaggagatgctggggcaaaactctgttgataatgaatctagattctcctctgctgagatttgtatggaaggaggattatcaacaataaaagatcaactatctggggaaactccttcaacatcccatgataataaggatgttgatcatgaaacttgtctaagttcagcagagccatctcctgtggataataatcctgcccaaaagtctgacagcagcttttacttcgaatatggtgattggagagtcctgtgggatccattctacagtcggtattacttctataacatcttgacacaggagtctacatggtatcctcctcacggattggaggattttgcatcacattctaacacatgtatacctgaagacctggacgaatttggctcacaaaataaaagcacaccggcacaagaacatggtaagagtccttaacggtttgatccgtcatctgatgttgtgtgccctcaaagtttcagtatatttttttatgttgataattgcaacaacctggattgttaacatggcatttttctggcactaacatttccagagatttcctgcctgtagttgcaagttctgcactattatgttcctgcttgtagttgcaaaatagttctgcatttttatacttgctcgattaattttcttggattttctcataggcatgaatgcatgatctcctattcccatcgatattgttcgtacttctattttctttagtatcatacattttccttttatctctgatcagatcaggctggtggtgacaagcatttggatgagcaggggcaagcttgttacagtgaattgagcaatttatcagatattcctgatggagagagaataaatcaatggtatgttggatcatatcaaataatacttccttgacataatctatttcttgttaatatccgttctctatgcagtatggtaactttcaccgatgaagcacgccacactgataatattcatcatcagaatgatagttcaatgagtgaaatttcagagatgaatcaggagattggtcgtaccaaaaagaaaaagagagtaaggagatctaagtcatgtaagatattcagcttcagccttgtaggagttgtcgtacctgataccttttaagatgattctaccgaatgtcgtgcaaatgtttatcatagctatggctgctaatcttcggtttatttatctctgaataaccatttctgttattccacagatcattcatgtcaagacttggcagggaacatctccaatgacattgccaagtactgggctcagcggtattcacttttctccctttttgatagtggtataaaaatggatgaagaaggatggttttcagtgacaccagagctcatcgcaaagcatcatgcatctcgcgttggtgccggcattgtgattgactgtttcacaggagttggcggaaatgccatccattttgccaacaagtgcgttactgttatcacattttcatgcattctttttacatgtgaataatttgttaacttgagactctttacatggaactgcatttccgggcttacattatgagaatgttaacagtttggcctgaatattttcttaaatatttattcatgtttgcatagagcacagtgcacactggcacaaagatataaccatttggggaatattttttttgttgaatttggtgccactgcctattcacaatcatgtttggatagggaaatcctctgtttcttgatgcagctccaactacatggttttacattagtaacaccattttttcaggtgcaggcatgttatcgctattgatattgatccccaaaagattgattgcgcgcagcataatgcaactgtctatggagtacatgatcatatagacttcgttagaggtgattttattcatgtggcgcctcgtctgaaggtacatcttaatactcttatctattaaaaatcttttcatctttaatcttacgtttgtggatttgttgtttcctttagttacccattttcatagtttcctatgaaattgcattattactatgattatgcttgcatgtgcccatccatgtgcatgggtggcatttcctggatgtgttaaatatgttaggtacaaaatgaatttctgttttatcaataaccaaattaattccaagttttgtgagaatccttctttgtataatccccatgaaactggcacttggctaggagtacaattggattggtcattgtcatactcatacacctctcgttctgtatcctattccatacctctggtttctagtcaaaagctggtagtgcccgacaagaatatagatgcaggttgtatttgtcgtgaataaggaagtggatacatgtagtactgcaataaatatgttcagatgtgacacgaaatcagagattgcattttaactacccaaccctttcccatattttggctctatgcaccaccataaactcttactgtaatatatatgacctacaggttgctacctagcagaaagtttttgcaccaagctcttcactagttctagaacgcatataaacgtggaatccatatgcacatttgattatatgtcatctgggcatttcaccaaattcctgatgtggatctagagatctggtaaccaacgatccctggccttgatctggaactgcttgacagtaacatcctttgttcacatgctaaactctgacaggacgatgaggaatatcttcctttgttcacatgcctgttgttttcttgcattagttggtttaatatgcttactgtgggtgaactgttttacacagggagaaactgtttttatgtcgcctccttggggtggaccagactatgccaaagtagatgtatatgatatcaaaaccatgcttaagccttgtgatgggttagttccttcttccagagtagtctgtttatcgttccattcacagatgttgacaagctctggttggatttttttcaggtattctctctttaaacttggtacatcaatcgcttcgagggtggtgatgtttcttcctcgtaacattgaccaaaatcaattggcagacatgtgcctgtcagttgatcctccttgggcagttgaggtatatccatttcctgtgatttgtgtatagctgacttggccacaaaagaagggttgatgcacttgtggagcttaattgtttatccatggtcttttcttctgatgcacttacttgtggaacttaattgtttatccatggtcttttcttctgatgctaagtggtcttttcctattactttctggcaggtagagaagaatttcctcaatgggaagctgaaagccataacagcatattttgagcagcaggatggttcagatgtgcaggacgctagtgatacaaacccccaaaacccagaataccatgcttagtgaaaaacgcctgtgctcaatcatcaaaggtcagcgtaatcacaaggtgccactcaggccatcgtgtaagggcgcgttcggctgtcgtgtgcagcggtaccctgcagcctacacccagttcacttggtgcagcaacaagctgtaacatggctgtgaaacagcgctgtacaagcagccgaagaggcccctccctaagtagttgattttggttcttacttgctagcatgaagtttctgtaattatgtccagtgtatctgtttgtgtcatcaacctctctgttattgcaccgtccactgtacgatatatagctcttgcggcatcccagcaagcatcatggtgctgcttccctagcaaatctatcttcgaatggcatgggaaaaaggctgacgtgatatgttctatgcatcgctcatactgactatgtgttaccacatcgtggtttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0396900, RefSeq:Os03g0396900