Os03g0405100

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Revision as of 12:42, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0405100| Description = RpsU-divergently transcribed family protein| Version = NM_001056863.1 GI:115453454 GeneID:4333072| Length = 5995 bp|...")
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Gene Name

Os03g0405100

Description

RpsU-divergently transcribed family protein

Version

NM_001056863.1 GI:115453454 GeneID:4333072

Length

5995 bp

Definition

Oryza sativa Japonica Group Os03g0405100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:17216119..17222113

Sequence Coding Region

17216185..17216553,17216659..17216766,17220387..17220554,17220646..17220817,17221504..17221577
,17221676..17221756

Expression

GEO Profiles:Os03g0405100

Genome Context

<gbrowseImage1> name=NC_008396:17216119..17222113 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:17216119..17222113 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctcctccctcgccgcgcgccgcctcctctcccgctccgccgccgccgcgtcccgccgcctcgtcccctgcgcctcgtccgcgaccccgcgcgctgcccccgctgctctgcgccgcttcttctctgcggaagcctcgacgccgccaccgacgccgccgacgccaccactcccgccgccgcctctggagcccaccgtcgagccgcccaagtcggagggcgcctcctcctcttccgcctcgtcttccgccggcgccggaggagcccatcggtcggcgccgggggcctcggcgggggctcgccgcgccggcggcacgggctacgaggaggagcaggagaaagtgctccgcgcgtcgctgctccacgtgccaaggatggggtggagcgagtcagccatgatcgccggggcgagggacgtgggcgtgtcgccggccatcgtcggtgctttcccgaggaaggaggctgcgctcgttgagtttttcatggatgactgccttcaacaactcattgatcgcattgatgctggagagggagagctgttgaagaacttggtactgagtgagagactttccaaacttgtccgaatgaggctggaaatgcagggaccttatatatcaaagtggcctcaagctctcagtatccaatcccaaccagcaaacatttcaacaagtttaaagcagagagctgtccttgttgatgagatttggcatgctgctggagatgctggatcagatattgattggtatgtgaagcgtactgtgcttggtggtatctactctacctcagaggtgtatatgttaactgacaattctccagatttccgcgatacatggacatttgtgagccgccgtatcaaggatgctcttgatcttcagaaaacttttcaggaggccgcgtatctagcagaagccgtcggtgcaggcatggggggctccctacagggtgtcctgaacagacttttcaagaaatga</cdnaseq>

Protein Sequence

<aaseq>MASSLAARRLLSRSAAAASRRLVPCASSATPRAAPAALRRFFSA EASTPPPTPPTPPLPPPPLEPTVEPPKSEGASSSSASSSAGAGGAHRSAPGASAGARR AGGTGYEEEQEKVLRASLLHVPRMGWSESAMIAGARDVGVSPAIVGAFPRKEAALVEF FMDDCLQQLIDRIDAGEGELLKNLVLSERLSKLVRMRLEMQGPYISKWPQALSIQSQP ANISTSLKQRAVLVDEIWHAAGDAGSDIDWYVKRTVLGGIYSTSEVYMLTDNSPDFRD TWTFVSRRIKDALDLQKTFQEAAYLAEAVGAGMGGSLQGVLNRLFKK</aaseq>

Gene Sequence

<dnaseqindica>67..435#541..648#4269..4436#4528..4699#5386..5459#5558..5638#ccgcctcgccatttcttcgagcaggtgaggcgcacgcgcacttcgccgctccgctgcacccccacgatggcctcctccctcgccgcgcgccgcctcctctcccgctccgccgccgccgcgtcccgccgcctcgtcccctgcgcctcgtccgcgaccccgcgcgctgcccccgctgctctgcgccgcttcttctctgcggaagcctcgacgccgccaccgacgccgccgacgccaccactcccgccgccgcctctggagcccaccgtcgagccgcccaagtcggagggcgcctcctcctcttccgcctcgtcttccgccggcgccggaggagcccatcggtcggcgccgggggcctcggcgggggctcgccgcgccggcggcacgggctacgaggaggagcaggagaaagtgctccgcgcgtcgctgctccacgtggtatcgtttcgggctccctcgagatctgcttccatttccgcctatctagcagcgtagtgagtaattttctgaacgtctggttgatggtttggttgtgcgttgtagccaaggatggggtggagcgagtcagccatgatcgccggggcgagggacgtgggcgtgtcgccggccatcgtcggtgctttcccgaggaaggaggctgcgctcgttgaggtaactttgcttacggtggtgggactatcttgtgtatctttttcaatcggtggtgattcgcaatgttcttggcaagaaaagaatattctgggatgctagtacattgtactggagaggtaaggaggggacatagtgatagtgtactcgaggtatgatgatttggatatgcatctattgaatttggatcagaacctataggtagctaacacaacgaatgctgtcagtcattgcctcattggtatgataattgttgtgcacctaatggatgatgctcgtgatgaacatgagtgcttcaagtttgtgatgtgattcacgacttctattttgtgaactgatattagcacttgtagttgtagaatgtagataaaccttccaggcaagcgttgttgtactacatggataaaagcatgaataatttgtacctagaagctactagagtgttataactgtgatatatggattatttcacattcataatagggcttgtggtatctgttgagaatatcttagattattcttaaagttggttcatgactgaaatgaatagattttggattaaacttaattacgttcatatcttgattctgaaaatgctaatcaattgtaaataaggtgatcataaaagtcagacctgcttgatatccagacccactttaggtttgggaatgttgtggtgttgtttttgcttggaagtatagtgacatgtatttcgggaatacatagacaaatccctatctaaatttggtagtaggggtcctgtgcacttaaattgcacatttttattgttgaatatacatgctttgtgttctacaaaagaaaactgcatttcccccagtttctagtttcaacttctaattgaagcattgatttttctttacacttttggtattgacttggtatcactacaaattaaatattggcctctcctactaaagtgctcattttatgtgaagttatgaacagttcaatgttttctgagtgacaattttattgaattgttataaatgcatgaccatcatagcaggtaaaatctggggaaatattgatgaaatacaagcaatgtaacccatttctccatatgcacaaaccatggatctttttcggcaatagtgctattatattgtgttatgtttcatatttggttactagtgagcattgtttcatgaaagcattggcatgcagatgttttcattctgtctcatgctgtagctgggtcagtatggtggatgccagtcccatagggcaatatctgttagtcagctataatgagggaagtgcggggtcccattaatgagggaagtgagggatgggttagtcaactatgatgccagtcccatagggcaatatctgttagtcaactataatgagggatgggttactttatagtaagatgagatttggtatgtcttaggatgagggaagtggaacttatggaaccaagagctgggagcataccagatgcaacccatcattatgatgctatcattcaaccctgtttcagttgggggtaccaaatcaatctgaaaagctcacataagaatcaatgatataggctatggaaatctggcacttcaaaatttcagctgcgaactcaaagtgcctttgaagaaaacaaaaatacaggaacaataggatttacttaataaccttgatttattttacttgttactcttaattccacgaacttgaaatttatacataggtgacagagagtatacttgtcagtacattttcctggactatgacatgttgattgggtacctcaaaaaaactgagttgcatgattatactatgctaagttgtttaatggtcagcagctcagttttgagaaacactgtagaggaaaacatgtttttttttcccagaagactccttgatccttaaataaacactattcctctggctctgacacctttcctgcttcaccatggaaaacatcacaaattacatagggatgccccttgctcagccaatagtgctgcatcttccttcaagaattcataattctagttgtatattttcaatcactatgaatgtaactgtttaatttgaaaacctggttgttgtcacagctggccatgacaaacttgctacaattcttctcatcctcatcaattgtgaatcgtcaccagctgctatgcttgagcgaaacagcctagattgttaatctgacttcttagataagagttcagattgtgaaatgtttctgtgagaattaagtgcttccgtttgtgcagtaaggtcgatgtttatttgttaactttctcttaatcttaactaggggatatccccacgaaattttgcgtggactagttgaattgaattggatttaactatattttgtacacaccagatattagaagtcggatactcaaattggacttatacaactcttctcttctctttctatagatacaattgtactttctgtacagctattactaccaatttacaccgttataatttggtcccaccacgatctaatggcatagattttatactttttctccgattaatatggtaatctctaggcatacattgtatacaactattgctaccaatctacactgttataacttggtcccaccatgatctaatggcatagatttttctctctgattaatgtggtaatttctaggcctccagagcaaatgtggtgcctctttttagagttatcttcataatataatagatagatggatgccctgccaagtcttctgcgcattcccggagaaaacatagttgtgcatccttttctgtatgtgcatgtctgggcaacatagggtgctactcatcaattttttaaaaatagatgctctttgaaagagggcaacaaagaagagggaaaaggatagacaatttgtgggagtagccacagaatatgaaggaactcagcaagaaggaaaacgaatcacatgttgcattgttagtggctaatggttaatccacaatactttgactggtttgagtgacaagcagtagggttgggttaattacagctaccaaacgtttctagagttgaaatacttaaaaataaatctgagggtacattacaaagtctcctgtttaagagttgtgacagtatttggctgtaaatttatttatgcattgtttgtgactctctagtgaagcccttgctgttatcttgaagaaacaaagtagacaggtttcctatcaatactaagaatgttcgaattatatttatccttattttttcatttttattactatcaatgttgcaaaatagatgaagtaatttgagttcatctagtttttctctcctttttttgtaatggtgatttggtgcccaaaacaaattttcatgattgcgccttctattatggcttcttcccacgttcaaacatagtatgacctcttaacttaaacaggtctgccaggtaattgaactaaaatactcgataggaattctagggagatgtcttagtttacttagcctacaatatgttttgggatgttccaaaaccttctgaaaaacagtgacagtgtagcagactcatgacataaaaatagaagtagtaatcttttgcacgttaacagtgtatactatgaaacaaagcctcaatgagcctactctgaccgttctgtttacttatgtgcagtttttcatggatgactgccttcaacaactcattgatcgcattgatgctggagagggagagctgttgaagaacttggtactgagtgagagactttccaaacttgtccgaatgaggctggaaatgcagggaccttatatatcaaagtggcctcaagctctcagtatccaagtactccattatcaccacctcttattttcctttgcatttaactaaatcatctgatccttgtatgtcttaactttatttttctgtttgacagtcccaaccagcaaacatttcaacaagtttaaagcagagagctgtccttgttgatgagatttggcatgctgctggagatgctggatcagatattgattggtatgtgaagcgtactgtgcttggtggtatctactctacctcagaggtgtatatgttaactgacaattctccaggttggctttcctaagcttgatagttcaattccgattccttttatgcttaatgtttaaaaccagttttaataaagcgtccttttggaatacttagacagcgagtattacaacagaaaatgttccattgcctgaatctcaatttaaactgtaaatggctctaaatgcagataatgtaccagctttagttttctgtttaaataaatcatagtgaacaggggttgatatatatattttaaaaaccttttctatttgttccttccaccgtcttaaagatagttgttttggaagttcagaactcaacatggtaatgtgtacacataacgtaacaaaatggaatcagtaaatatctgggacccttatagatccttatgtagatatatatgtggttctgtaaggcatttcatcctttttggtagaaatatgggcctctgtgcccttcagtatctaaaagctgaaagcaggatgagaaacttaagggcaatgataaggaaagtgtattatctgtaactaatgtggtctgttacacgcatcctcgttcctgatagcatatacctgttgagtgaacgtcttccttttttcctgcctctgaacatcatagagaacgataccacgttcacattttcttcaaacggcattcgatatatacttctgttgaccgtttcctctttcctgtcaacgcttgacagatttccgcgatacatggacatttgtgagccgccgtatcaaggatgctcttgatcttcagaaaacttttcaggaggtattaagcacatcatgctcaagtcgtatgctattttagacctcatcatctcattctacgttatcaacctgctgacccgaagcgatcctgtgttgcaggccgcgtatctagcagaagccgtcggtgcaggcatggggggctccctacagggtgtcctgaacagacttttcaagaaatgaagtgcataagcgtgcgtttgatacttttcattctcgacatttccaatatatatcgctttttcgattcagctgttagtgcattccaagttaaataaagcaaactggattttgatcacgatttgcctacgctggtagtgatgatgtacataatagcatgtttttttacgatgaaatatcgtcaggacccacatgcgcacaaagatgaggttgctagatctacttaacacttgagttgttttcttttcatgattacctgtgaaccgaaaaatgttcaacttgtggttatgtaatgtcccacttcaggtagcgttggtttcgtcttccaattagaaataatgtcagtggttggttttggat</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0405100, RefSeq:Os03g0405100