Os03g0406200

From RiceWiki
Revision as of 12:42, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0406200| Description = Elongation factor 1 beta 2| Version = NM_001056868.1 GI:115453464 GeneID:4333079| Length = 4139 bp| Definition = Or...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0406200

Description

Elongation factor 1 beta 2

Version

NM_001056868.1 GI:115453464 GeneID:4333079

Length

4139 bp

Definition

Oryza sativa Japonica Group Os03g0406200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:17290316..17294454

Sequence Coding Region

17291153..17291238,17291327..17291443,17291537..17291612,17291833..17291956,17292620..17292733
,17292838..17292999,17293883..17293884

Expression

GEO Profiles:Os03g0406200

Genome Context

<gbrowseImage1> name=NC_008396:17290316..17294454 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:17290316..17294454 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgattactttgtccaatgtcaactctgaggcaggcctccagaagcttgatgagtacctccttactcgcagctacatcagtgggtaccaggcttcaaaggatgacatgactgttttcacctcacttccttctgctcccgcagcaagctatgtcaatgtcacaaggtggtatgatcacatcagtgctctcctaagatccagtggagttaccgcagagggtgaaggtgtgaaggttgagtcaactgcttgttctgtgtctccaactgctgaccaaaaggcaccagcagctgatgaagaagatgatgacgatgttgatctgtttggtgaggagactgaagaggagaagaaagcagcagaagaacgggccgcagctgtcaaggcttctggaaagaagaaagaatctgggaaatcatcggttctgctagatgtaaagccatgggatgacgaaacagacatggcaaagcttgaggaagctgtgaggaatgtgaagatggagggcctgctctggggtgcatccaaacttgtaccagttggatatggcatcaagaagttgcaaattatgatgaccattgtggacgatcttgtttctgtggacagtctcattgaggattatttttacacggaaccagctaatgagtttattcagagttgtgacattgttgctttcaacaaaatctaa</cdnaseq>

Protein Sequence

<aaseq>MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLP SAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDD DDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAV RNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSC DIVAFNKI</aaseq>

Gene Sequence

<dnaseqindica>838..923#1012..1128#1222..1297#1518..1641#2305..2418#2523..2684#3568..3569#cgtcgatctcctcgcgactttgcccgccgccgccgccgccgctctccatcccgcgagaagctcgtcgccggcgtcccgctgcatccatcctctccggcggtgagcgcccgcacgcgtgcacatcctctctctcatccctctcgttgtacccaacaccccctattttttgttttttttttccctcgaatttgccttaaaccttagcttctctcctagatctggaagcgttcctctgtgccttgtatgtgaaccttagcgagctaacctctctcggcagtcttgtctgctagcagtccgatcttcttcgtcatcgataggttttgatgctgtcgcgtgcgcttctcgatttcgatttctccatgcctgtgactttgtatcgaaatccttgtgttgcggataggatactcgttcttggatgataatccttgtagctagattcggtgccgatgttgctgggttggggatttcaattcgtagcttgtagggttgatgggtttcattcttgttctcatgatttgttcaggtaaaaatgacgcctcatgtgaatttgtgtgtgtaagtaccattgcacttcacctctgcttacaatgtcaatggagctctatatgaaatataggtatgattagatctgtattgatagcacaacgtcctggttacttgttagtgattcgatggttggttttttagacaccattttttgcttgttggtcagtgagatgtttgtttgatgctatctttgctgcatgaattatcgttaggtctttcttgcaactttctgtcaatttattttcgaacccatatgcatatagatcacctgatacattttgttgtgaccagatggcgattactttgtccaatgtcaactctgaggcaggcctccagaagcttgatgagtacctccttactcgcagctacatcagtgggtaggagatattgtcatacatgtcatctcctttgttaaatgtgtcacattgttcttacgctctattaaaccaaaccttttctcctcaggtaccaggcttcaaaggatgacatgactgttttcacctcacttccttctgctcccgcagcaagctatgtcaatgtcacaaggtggtatgatcacatcagtgctctcctaagatccaggtgcgtgcttgaaagaacatttgtgtgtaccactgcattgctttctagttgtattatcccatggagctaatgtgagtctgatcaaccttgcagtggagttaccgcagagggtgaaggtgtgaaggttgagtcaactgcttgttctgtgtctccaactgctgaccaaaaggttaaaaatctgccacacttttttcagggaaaaattggctttgtagttgcttgttaaggggcaagagttaatgcggtggtatgaaacttatgcttgatgatggatgcctgcatgattgaaatatcagtcgtatccaatttgtgtgacatgttttgtatcacactgaagaaagtttaaatattgctatcttgaatgtgctaagtataagatttaataccaggcaccagcagctgatgaagaagatgatgacgatgttgatctgtttggtgaggagactgaagaggagaagaaagcagcagaagaacgggccgcagctgtcaaggcttctggaaagaagaaagaatgtatgtatttcattgatttatggggtccctgcccattgctgcattgaggcacttacttttaggtagtgacaaatggttgaaggtgattaaaagaggagggttaaggccttgggcttattaattcccagttagttttttgaaaaactcataaaattggctgtaataatttaagaaagtttatagcattcaaatcttcttcagctgcacatttgcttagttgtttttagagtaaaattctgaagttacataataaatactccctccgttccaaaatataagcatttctaggactcaattttttttaccatgatataagcgtttctggggcactgattccaatgcaagggaatctgtacattttcagctaatgacatgcttgggaagggaatttaagcaattcaaaaaaattcaaatttgaccactgaagtgactaaaagagaatttttttccctataacttagcttttgctaaggaacatagaaatgcttatattttgaaacggaggttactcattgttatctctatcactatcatgcttggtgaatttcactctcattcagctgcatttatgctattagccccaaaatttaatattgaggcaatgctatatgatatataaaaaatattgccaaaaatctattactaacttatcctttattttagctgggaaatcatcggttctgctagatgtaaagccatgggatgacgaaacagacatggcaaagcttgaggaagctgtgaggaatgtgaagatggagggcctgctctggggtgcatgtatgtgactctattcttcaattttattctgctaataaatccagtactaatatgtgctcttatggtttaatagttcattttctaacataaaatcatttttgcagccaaacttgtaccagttggatatggcatcaagaagttgcaaattatgatgaccattgtggacgatcttgtttctgtggacagtctcattgaggattatttttacacggaaccagctaatgagtttattcagagttgtgacattgttgctttcaacaaaatctgtaagttccttggcaagtttggtgcttttagtttggatttccaaataactgaaactaatggtttgattgaatatgcaaaactctaattagtgtaataaaattcttggacctatgtgcgtacgagtctttagagcaaccagtgctggtgccaactaaaataaactgccatatgtatgacctagattcggattcaagatgtaagcagggttaaattgtccttaaaagtcactggaaatggctcacaactgatttttgaataaaccttgatagctgtaattggctggaaatcaatgtgtacctatcctttgctttttctccaaaagtacttgtgcacatcagcatcagtcatctaaaacttcgttaaataacctcaagttgccatgaatcattctagtcagcgatctatgggacttacaacgtatgcctgaattaatgatctcttgtccaattatatactccctccttccctaaatgtttgacaccgttgacttttttaaatatgtttgaccgttcgtcttattcaaaaaattttgtaaaatgtgtaaaactatatgtatacataaaagtatatttaacaataaatcaaatgatagaaaaagaattaataattacttaaattttttgaataagacgaacggtcaaacattttttaaaaagtcaacggcgtcaaacattttgggatggaaggagtagtagtcttatggtttcctgagtgttgatctgatatgctgcaatggtggctgttatgtcacttactttcttcaaagttgatttggtttattatcagattctttaccctaccagaaaaacctgactgatatttacctctaagtatttattcctggtttttgtgagctgatagctgtatatatttttgttgcagaaaatggagtcttgtcagaggcagccttactaaaagaggaatgctatatgctcatcatcagaatttcccaatggtttatgtttcgtctatggaccttgagtgtactgcgaaccagcgtttggtattatcatgagatttaaatcttggttggacttgttttggccagttgccccctgttggtttgtacctattgattttggaggtctttgtcacatgcccgttcagtcgttctacacaagtagttgccctttgcatgatctggtataacagctgcacaactgttctcggctgatgtacgataatattgtctatatcgtacctggtacaccgaaatagtgggatatttaactattttctactttcaaggtgtggcatttaaaaaattgttactcagtttatgacatgtgggtattcgtacggctatgatttatgggttcagtaacaaatcgttaaatgtcacatcaatgagtggaaaatagttaaatatctctgaaatagcgggggcaggcgcaaagggtgtctactcaaggagcaaaatgcagctgcacccaaagaaaagtgagaactagttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0406200, RefSeq:Os03g0406200