Os03g0413100

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Revision as of 12:43, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0413100| Description = Similar to ACR4| Version = NM_001056894.1 GI:115453516 GeneID:4333106| Length = 3158 bp| Definition = Oryza sativa ...")
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Gene Name

Os03g0413100

Description

Similar to ACR4

Version

NM_001056894.1 GI:115453516 GeneID:4333106

Length

3158 bp

Definition

Oryza sativa Japonica Group Os03g0413100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:17728034..17731191

Sequence Coding Region

17728227..17728230,17728820..17728895,17729008..17729053,17729150..17729264,17729354..17729433
,17729510..17730103,17730196..17730300,17730706..17731044

Expression

GEO Profiles:Os03g0413100

Genome Context

<gbrowseImage1> name=NC_008396:17728034..17731191 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:17728034..17731191 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatggtgagacgagctgttcttcctgggacagcgacgatgagtaccagaagttcatccaaaagatgaaccctccaagggttgtgattgacaacacatcatgtaagaatgcaacagttgtgcatgtagacagtgccaacaagtatgggatactgttagaggtagtgcaggtcctcaccgagctgcaactcatagtgaaaaaagcctacatatcatcagatggtggatggttcatggatgtgttcaatgtgactgatcaaaatgggcagaagataatggatgaatcggtactggatgagatagtaaagtatattcataagtgtcttggggctgattcttgctttcttccttcgcggaggagatctgttggagtggaaccttcctctgactacactttgatagagctaactggaactgataggcccggtctgctctcagaagtgagcgctgtgctcacaaacctggaatgcaatgtggtgaatgcagaggtgtggactcataacaaacgagcagcagcggtcatgcaagtcatggataggaaaacggggctggcaatctcagacacacaacggcttgctagaataaaggagcgacttagctatgtgttcaaagggagcaacaggagtcaagacaccaagacaacggtgacaatggggataacccacacagagcggaggcttcaccagctgatgctggaggatcgggattatgaaaggtatgataaggataggacgaacgtcaaccccacaccggtggtttcggttgttaattggctcgacaaggattattccgtggtgaatattcggtgcaaggatcggccaaagcttctcttcgacacagtttgcaccctgacagatatgcaatatgtggttttccatgggagtgtggattctgagggccctgaagcttaccaggagtattacattaggcatattgatggctcacctgtcaactctgaggcggagcgacagcgagtcatccagtgtcttgaagctgctatagaaaggagagtatccgaggggctgaagctagagttgtcgacaggtgatagagtgggactgctatccgatgtcacacgcatcttccgtgagaatggcttgacggttacgagagctgaagtttctactaggggtgacaaggctgtcaacactttctatgtccgcgatgcagcagggagctccgccgtcgatctgaagactcttgaagctatacgccaagagataggccagacagtgcttcaagtaaaagggcaccctgatcaccgcaaatcacctccgcaagagtcgccatctaggtttctcttcagcagtctgttcagaccaagatcgctgtacagcctagggctgatcaggtcctga</cdnaseq>

Protein Sequence

<aaseq>MDGETSCSSWDSDDEYQKFIQKMNPPRVVIDNTSCKNATVVHVD SANKYGILLEVVQVLTELQLIVKKAYISSDGGWFMDVFNVTDQNGQKIMDESVLDEIV KYIHKCLGADSCFLPSRRRSVGVEPSSDYTLIELTGTDRPGLLSEVSAVLTNLECNVV NAEVWTHNKRAAAVMQVMDRKTGLAISDTQRLARIKERLSYVFKGSNRSQDTKTTVTM GITHTERRLHQLMLEDRDYERYDKDRTNVNPTPVVSVVNWLDKDYSVVNIRCKDRPKL LFDTVCTLTDMQYVVFHGSVDSEGPEAYQEYYIRHIDGSPVNSEAERQRVIQCLEAAI ERRVSEGLKLELSTGDRVGLLSDVTRIFRENGLTVTRAEVSTRGDKAVNTFYVRDAAG SSAVDLKTLEAIRQEIGQTVLQVKGHPDHRKSPPQESPSRFLFSSLFRPRSLYSLGLI RS</aaseq>

Gene Sequence

<dnaseqindica>194..197#787..862#975..1020#1117..1231#1321..1400#1477..2070#2163..2267#2673..3011#gtgctctcctcctcttcctcttcttctccttccttcctgccattcctgtgaccccgagccgaggcggcgagagagagagagagagagtattagtagtagtaggagagggaagcgagtctcctcttcctcctcctcctcatcgccgttagctgctgctttcgccgaaggattgttgctgggccgcgtcgtgaccatgggtatgtttcttgttctttcgttggctctaggatttggattttgagttcttgttccccccgctctggtagcccgccatggcggcggtaggtattcgaggtttcctccacttcctttgtcggggcttccgccctctcactccgtttctttggaaacatcgaaccggccgggttgccgtggtcggttcttgcaagaggaatacctcccttttttcaaataaagaaacgattttttctccctttatttaggactatgcgtggagtactcccgctatcggtgtttgggtgttttgatgtttgctgctgagatttcgtcccttttagtgtttcgtctgtggcggtgtttcggaatgtaaattcagtttttggtgctaccggagtagttaagactgggattctgtgttaataatatttttgggtctcggcacatttatgtatgcgcagcaaagcgaccgattttcctcgcatttgttgatgttgcgatttttttcattccaatcctgtatgctcaattgattccctgaagcgcactgtaccgagtttgattgggaatttttttaatgagttattgtccattctgttgtgttagcagatggtgagacgagctgttcttcctgggacagcgacgatgagtaccagaagttcatccaaaagatgaaccctccaaggtgacaaactgacaaccggttcctccgtaccctcatcaatctcagtactgcacaattaattatccattgccaaatcgtttgtagccgactgatgtgtgtttactgaatccagggttgtgattgacaacacatcatgtaagaatgcaacagttgtgcatgtaaggcactgaccaaatcgaggtctttttcttggtgcaaattgtttctgtttggttggtgaaaaagtgatttgtttttttgtttgaatcgtgtaggtagacagtgccaacaagtatgggatactgttagaggtagtgcaggtcctcaccgagctgcaactcatagtgaaaaaagcctacatatcatcagatggtggatggttcatggatggtacgatgcgattcttgagattttttttcttgaaatcgattagttcagaatggttaatttatcctgagctgttgatttttttatgtcagtgttcaatgtgactgatcaaaatgggcagaagataatggatgaatcggtactggatgagatagtaaagtatattcataaggtaattgatgccatcctaccttgattcttggttcattcaatgttcagcgtgctcaatctgctaactttccatgcagtgtcttggggctgattcttgctttcttccttcgcggaggagatctgttggagtggaaccttcctctgactacactttgatagagctaactggaactgataggcccggtctgctctcagaagtgagcgctgtgctcacaaacctggaatgcaatgtggtgaatgcagaggtgtggactcataacaaacgagcagcagcggtcatgcaagtcatggataggaaaacggggctggcaatctcagacacacaacggcttgctagaataaaggagcgacttagctatgtgttcaaagggagcaacaggagtcaagacaccaagacaacggtgacaatggggataacccacacagagcggaggcttcaccagctgatgctggaggatcgggattatgaaaggtatgataaggataggacgaacgtcaaccccacaccggtggtttcggttgttaattggctcgacaaggattattccgtggtgaatattcggtgcaaggatcggccaaagcttctcttcgacacagtttgcaccctgacagatatgcaatatgtggttttccatgggagtgtggattctgagggccctgaagcttaccaggtacctctctgctaacaacacagcctctaattctgccagaattatacttagacatgtaacgtatcgtttgttgtcttttcatggttcaataggagtattacattaggcatattgatggctcacctgtcaactctgaggcggagcgacagcgagtcatccagtgtcttgaagctgctatagaaaggagagtatccgaggtaactggacaaaaatacctgctcctttgtgattccatttattttgttctcattgtatatgttactttcttaagggcgttgatgttacctaaacatttagtctgcatagtatagtgcggaaagggacaacattggtgtcatgcagcctgtaggaggtaaattgtggttggagagctggcatcttgtattgtctgccacactttactgatgagtcgctgtcaatgttttgagtccttttccttcttggtgaagcacatgctgttttctccaatgcttgagagtgctattcatacaactaatccattcgtggaaaacacaatttgcttgctactattctgcactccattttttgtttatgtatttactctgacttaattttccaataatcgcatatattacctgcaggggctgaagctagagttgtcgacaggtgatagagtgggactgctatccgatgtcacacgcatcttccgtgagaatggcttgacggttacgagagctgaagtttctactaggggtgacaaggctgtcaacactttctatgtccgcgatgcagcagggagctccgccgtcgatctgaagactcttgaagctatacgccaagagataggccagacagtgcttcaagtaaaagggcaccctgatcaccgcaaatcacctccgcaagagtcgccatctaggtttctcttcagcagtctgttcagaccaagatcgctgtacagcctagggctgatcaggtcctgagttcttgggtgcctgctcaatccgcggatcgacaaatcatagcatgccatgtcaacaaatacatcgcggtgtatactctccgcagtctcagtcccaggacaaggctgatgatgcatttgactcaggtggcgtaccatcattcatcag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0413100, RefSeq:Os03g0413100