Os10g0317000
| Gene Name |
Os10g0317000 |
|---|---|
| Description |
Retrotransposon gag protein family protein |
| Version |
NM_001070866.1 GI:115481475 GeneID:4348294 |
| Length |
4858 bp |
| Definition |
Oryza sativa Japonica Group Os10g0317000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 10:8609139..8613996 |
| Sequence Coding Region |
8609418..8613848 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008403:8609139..8613996 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008403:8609139..8613996 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgggggacgatctcaagtccaccctggagaccctcgccaagaccctggcctccctgcaatcttcatccgaagccacgaccaaggcgatcgaggacaacacacaggccatcgcggccctgtccgttgctcggactaccgagaaggcttccacggaatcatcggggacacctgcaccagatcggccgccgaagcattggcgtccggagttccccaagtacgatggcaagaccgatccgctcgccttcatcaatcgatgcgagtcattcttcatccagcaacacgtcatcccggcggaacgcacgtggatggcttcgtacaatctgcaggacggcgcgcaactgtggtacatgcacgtccaggacaacgagggtacgccgacgtgggagcgtttcaaggaactcctcaacctccgctacgggcccccgctccgctccgtgccgctattcgagctctcggcgtgccgccgcacgagcaccgtggaagactaccaagatcggttccaggccctgcttccccgcgccggtcgtctcgaggaagcccagcaggtacagctgttcaccgggggcctcctcccgccgctcagcctccaggtccagcagcagaagccggcatccctggaagaggccatgagtctcgcccgacagttcgagctcatggagccctacctgttcccggccacgacatccgcgcgcggcgtactcccgacgccggccccccggccatcgaccggccccgtcgtcaagccggcaccggccaccgtcaccgtcgagggtcgcccggtcaagcggctctcccaagcccagcaggaggagcgccgtcgcctcgggctgtgctacaactgtgacgagaaatacagccgctcccacaacaaggtatgcaaacggttgttttttgtggagggtggtgcaatcgaagaaggcgacgacacggtggaggatgacaccgaagaggcgactgtcgaggcgcccgtgttctccttgcacgcggtggctggcatcccgttgggcaaaccgatcctgctccaagtgacgctcggtgccgcctccctcgttgccctggtggacacgggctccacccacaacttcatcggtgaggacgccgcgctccgcaccggcctgcccgtccagccgcgtccacggctcactgcgacggtggcgaacggggagaaggtttcctgtccgggtgtgctgcggcgggcaccgatcaccatccagggcatggcgttcgacgtcgacctttacgtcatgcccctcgccggctacgacatggtgctgggcactcagtggatggcccacctgggcaccaccatcgcctgggacgtgaccacggggaccgtgtccttccaacatcaagggcgcaccgtctcgtggcagagcctacccccgcaccagcgcgccgatgtccacgccgtcagcaccgggacgagcctcgttgcggccaccgggtcctcctccagcaccccggcgcccacgacggagcctgccctcctcgacggcctcctgggctccttcgacgacgtcttcgccgagccacggggcctgccaccaccacggggccgcgaccacgccatccacctcctgccaggcgccccgcccgtcgccgtgcgtccctaccgctacccggtggcgcacaaggatgaacttgagcggcagtgtgccgtcatgatggagcagggcctcattcgccggagcacgtcggcgttctcgtcccccgtcctgttggtcaagaaagccgacggctcgtggcgtttctgcgtcgactacagggccctcaacgccatcaccatcaaggacgcctacccgatcccggtggtggacgagctgctggacgagctgcacggcgccaagttcttcaccaagctcgatctgcgctcgggctatcatcaagtccggatgcgggctgaagacgtcgccaagacggcgttccggacgcacgatggcctctacgagttcttggtcatgccattcgggctgtgcaacgccccggcgacgttccaagcactaatgaacgacatcctccgcatatatcttcgccgttttgtccttgtgttttttgacgatattctcatctacagcaacacctgggcagaccatctgaggcacatccgggcggtgctcctcctgctgcgtcagcatcgcctgttcgtcaagcgttcaaagtgcgctttcggcgtcagctccatctcctacctgggccacatcatcggcgcgacgggcgtgtccatggacccggccaaggtgcaggctgtcgtggactggccgcaaccgcgctcggcccgcaccgtccggggcttcctggggctcgcgggctactaccgcaagttcgtccacgactacgggaccatcgccgcccccctcaccgcgctgaccaagaaggaggggttccggtggtccgacgaggtggcgactgcgttccacgccctcaagcacgccgtcaccacggccccggttctggcgctacccgacttcgtcaagccattcgtcgtcgagtgtgacgcctctacgcatgggttcggcgcggtactcctgcaggacaagcacccgctggcgttcttcagccgccccgtcgcgccgcgccaccgtgcgctcgctgcctacgagcgggagttgatcggcctcgtcctcgccatccgccactggcggccgtatctgtgggggcgtgcgttcgtggtgcggacggaccactacagcctcaagtacctgctcgatcaacgcctggcgaccatcccccaacaccattgggtgggcaagctcctcggcttcgacttcacggtggagtacaagtcgggcgcctccaacgtggtggccgatgccctctcgcgccgcgacacggacgagggtgccgtcttggcactgtcggcgccacggttcgactacatcgagcggttgcgggcagcccagaccacggagcctgctctcgtggccatccgcgacgccatccaggccggcacccgcagcgcgccgtgggcgcttcgcgacgggatggtgatgttcgactcccggctgtacattccgccatcgtcaccactgctccacgagatcttggcggcaatccacaccgacggacatgaaggcgtgcagcgtaccctgcacaggctgcgccgcgatttccactctcccgccatgcgccgggtggttcaggagttcgtccgggcgtgcgacacatgccagcgcaacaagtctgagcatttgcacccgggcggcctgcttcttcccctgccggttccaactacggtgtgggccgacattggcctcgacttcgtggaagctctgccccgtgtgggtgggaagacagtgatcctcaccgtcgtcgaccggttcagcaagtactgtcatttcatccctttggctcacccctacacagctgaatcagtagctcaggcgttctacgcggacattgtgcgcctccacggcataccccagtccatggtgtcggaccgggatccggtgttcacgtcatccttttggcgcgagttgatgcggctgaccggtacaaagatgcacatgacgacggccatccacccacaatctgatggccagacggaggccgccaacaaggtcatcgtcatgtacctgcggtgcttcaccggcgaccgacctcggcagtgggttcggtggctcccgtgggcggaatacatctacaataccgcctatcagacatctctccgcgacacgccgttccgggtggtatacgggcgcgacccgccgatcatcaggtcctacgagcccggcgagacgcgcgtggcggccgtcgctcgctccatggcggaccgtgacgagttcttggccgacgtgcgctaccggctagagcaggcccaggcgacgcacaagaagtactacgacaaaggccaccgtgcggtgtcctacgaggtgggcgacctcgttctcctgcgcctccgtcaccgcgccccggcatcgctgccccaagtgtccaagggcaagctcaagccccgctacttcgggccctaccgcgtcgtcgaggtgatcaaccccgtcgccgtccgcctcgagctcccgcctcgcgcaaagctccacgacgtgttccacgtgggcctactcaagaagttcgtgggagctgcgccaccatcgcctccggcactgcctgctgtccaccacggtgccattgatcccgagccagagcgcgtcacccgttctcggctagctcggggcgttcgtcaagttctggtccactggaagggggaatcggctgcgtccgccacatgggaagacctggacaccttcaaggagcgttacccggcgttccagctcgaggacgagctggctctcgaggaggggagagatgtcatgtggggccgaacctatgccaggcgccacagggcacgggacgtgcgccgagccggcgaacgcgccgcggcgcgcgcgcagagcacgtccagggagccacagggccaagtcaacaatagtggctag</cdnaseq> |
| Protein Sequence |
<aaseq>MGDDLKSTLETLAKTLASLQSSSEATTKAIEDNTQAIAALSVAR TTEKASTESSGTPAPDRPPKHWRPEFPKYDGKTDPLAFINRCESFFIQQHVIPAERTW MASYNLQDGAQLWYMHVQDNEGTPTWERFKELLNLRYGPPLRSVPLFELSACRRTSTV EDYQDRFQALLPRAGRLEEAQQVQLFTGGLLPPLSLQVQQQKPASLEEAMSLARQFEL MEPYLFPATTSARGVLPTPAPRPSTGPVVKPAPATVTVEGRPVKRLSQAQQEERRRLG LCYNCDEKYSRSHNKVCKRLFFVEGGAIEEGDDTVEDDTEEATVEAPVFSLHAVAGIP LGKPILLQVTLGAASLVALVDTGSTHNFIGEDAALRTGLPVQPRPRLTATVANGEKVS CPGVLRRAPITIQGMAFDVDLYVMPLAGYDMVLGTQWMAHLGTTIAWDVTTGTVSFQH QGRTVSWQSLPPHQRADVHAVSTGTSLVAATGSSSSTPAPTTEPALLDGLLGSFDDVF AEPRGLPPPRGRDHAIHLLPGAPPVAVRPYRYPVAHKDELERQCAVMMEQGLIRRSTS AFSSPVLLVKKADGSWRFCVDYRALNAITIKDAYPIPVVDELLDELHGAKFFTKLDLR SGYHQVRMRAEDVAKTAFRTHDGLYEFLVMPFGLCNAPATFQALMNDILRIYLRRFVL VFFDDILIYSNTWADHLRHIRAVLLLLRQHRLFVKRSKCAFGVSSISYLGHIIGATGV SMDPAKVQAVVDWPQPRSARTVRGFLGLAGYYRKFVHDYGTIAAPLTALTKKEGFRWS DEVATAFHALKHAVTTAPVLALPDFVKPFVVECDASTHGFGAVLLQDKHPLAFFSRPV APRHRALAAYERELIGLVLAIRHWRPYLWGRAFVVRTDHYSLKYLLDQRLATIPQHHW VGKLLGFDFTVEYKSGASNVVADALSRRDTDEGAVLALSAPRFDYIERLRAAQTTEPA LVAIRDAIQAGTRSAPWALRDGMVMFDSRLYIPPSSPLLHEILAAIHTDGHEGVQRTL HRLRRDFHSPAMRRVVQEFVRACDTCQRNKSEHLHPGGLLLPLPVPTTVWADIGLDFV EALPRVGGKTVILTVVDRFSKYCHFIPLAHPYTAESVAQAFYADIVRLHGIPQSMVSD RDPVFTSSFWRELMRLTGTKMHMTTAIHPQSDGQTEAANKVIVMYLRCFTGDRPRQWV RWLPWAEYIYNTAYQTSLRDTPFRVVYGRDPPIIRSYEPGETRVAAVARSMADRDEFL ADVRYRLEQAQATHKKYYDKGHRAVSYEVGDLVLLRLRHRAPASLPQVSKGKLKPRYF GPYRVVEVINPVAVRLELPPRAKLHDVFHVGLLKKFVGAAPPSPPALPAVHHGAIDPE PERVTRSRLARGVRQVLVHWKGESAASATWEDLDTFKERYPAFQLEDELALEEGRDVM WGRTYARRHRARDVRRAGERAAARAQSTSREPQGQVNNSG</aaseq> |
| Gene Sequence |
<dnaseqindica>280..4710#aagcaatcagttccaaacaaacctctctctcccttgcattccctaagcctgcggcagaggggcaaaacctcaccggagaagacggatcgcgactacgaactgcgtagtcggggttgtgctatccttgggttcgacgcccttgacaacctggtatcacgttcctctcgatcctctactccacgcgacgctgccgcgccgtcaacgtctgttgacaccgccgccaccaccgccgccgccgtcccagacaccaactccaccgcatcctaccaagccgctgccatgggggacgatctcaagtccaccctggagaccctcgccaagaccctggcctccctgcaatcttcatccgaagccacgaccaaggcgatcgaggacaacacacaggccatcgcggccctgtccgttgctcggactaccgagaaggcttccacggaatcatcggggacacctgcaccagatcggccgccgaagcattggcgtccggagttccccaagtacgatggcaagaccgatccgctcgccttcatcaatcgatgcgagtcattcttcatccagcaacacgtcatcccggcggaacgcacgtggatggcttcgtacaatctgcaggacggcgcgcaactgtggtacatgcacgtccaggacaacgagggtacgccgacgtgggagcgtttcaaggaactcctcaacctccgctacgggcccccgctccgctccgtgccgctattcgagctctcggcgtgccgccgcacgagcaccgtggaagactaccaagatcggttccaggccctgcttccccgcgccggtcgtctcgaggaagcccagcaggtacagctgttcaccgggggcctcctcccgccgctcagcctccaggtccagcagcagaagccggcatccctggaagaggccatgagtctcgcccgacagttcgagctcatggagccctacctgttcccggccacgacatccgcgcgcggcgtactcccgacgccggccccccggccatcgaccggccccgtcgtcaagccggcaccggccaccgtcaccgtcgagggtcgcccggtcaagcggctctcccaagcccagcaggaggagcgccgtcgcctcgggctgtgctacaactgtgacgagaaatacagccgctcccacaacaaggtatgcaaacggttgttttttgtggagggtggtgcaatcgaagaaggcgacgacacggtggaggatgacaccgaagaggcgactgtcgaggcgcccgtgttctccttgcacgcggtggctggcatcccgttgggcaaaccgatcctgctccaagtgacgctcggtgccgcctccctcgttgccctggtggacacgggctccacccacaacttcatcggtgaggacgccgcgctccgcaccggcctgcccgtccagccgcgtccacggctcactgcgacggtggcgaacggggagaaggtttcctgtccgggtgtgctgcggcgggcaccgatcaccatccagggcatggcgttcgacgtcgacctttacgtcatgcccctcgccggctacgacatggtgctgggcactcagtggatggcccacctgggcaccaccatcgcctgggacgtgaccacggggaccgtgtccttccaacatcaagggcgcaccgtctcgtggcagagcctacccccgcaccagcgcgccgatgtccacgccgtcagcaccgggacgagcctcgttgcggccaccgggtcctcctccagcaccccggcgcccacgacggagcctgccctcctcgacggcctcctgggctccttcgacgacgtcttcgccgagccacggggcctgccaccaccacggggccgcgaccacgccatccacctcctgccaggcgccccgcccgtcgccgtgcgtccctaccgctacccggtggcgcacaaggatgaacttgagcggcagtgtgccgtcatgatggagcagggcctcattcgccggagcacgtcggcgttctcgtcccccgtcctgttggtcaagaaagccgacggctcgtggcgtttctgcgtcgactacagggccctcaacgccatcaccatcaaggacgcctacccgatcccggtggtggacgagctgctggacgagctgcacggcgccaagttcttcaccaagctcgatctgcgctcgggctatcatcaagtccggatgcgggctgaagacgtcgccaagacggcgttccggacgcacgatggcctctacgagttcttggtcatgccattcgggctgtgcaacgccccggcgacgttccaagcactaatgaacgacatcctccgcatatatcttcgccgttttgtccttgtgttttttgacgatattctcatctacagcaacacctgggcagaccatctgaggcacatccgggcggtgctcctcctgctgcgtcagcatcgcctgttcgtcaagcgttcaaagtgcgctttcggcgtcagctccatctcctacctgggccacatcatcggcgcgacgggcgtgtccatggacccggccaaggtgcaggctgtcgtggactggccgcaaccgcgctcggcccgcaccgtccggggcttcctggggctcgcgggctactaccgcaagttcgtccacgactacgggaccatcgccgcccccctcaccgcgctgaccaagaaggaggggttccggtggtccgacgaggtggcgactgcgttccacgccctcaagcacgccgtcaccacggccccggttctggcgctacccgacttcgtcaagccattcgtcgtcgagtgtgacgcctctacgcatgggttcggcgcggtactcctgcaggacaagcacccgctggcgttcttcagccgccccgtcgcgccgcgccaccgtgcgctcgctgcctacgagcgggagttgatcggcctcgtcctcgccatccgccactggcggccgtatctgtgggggcgtgcgttcgtggtgcggacggaccactacagcctcaagtacctgctcgatcaacgcctggcgaccatcccccaacaccattgggtgggcaagctcctcggcttcgacttcacggtggagtacaagtcgggcgcctccaacgtggtggccgatgccctctcgcgccgcgacacggacgagggtgccgtcttggcactgtcggcgccacggttcgactacatcgagcggttgcgggcagcccagaccacggagcctgctctcgtggccatccgcgacgccatccaggccggcacccgcagcgcgccgtgggcgcttcgcgacgggatggtgatgttcgactcccggctgtacattccgccatcgtcaccactgctccacgagatcttggcggcaatccacaccgacggacatgaaggcgtgcagcgtaccctgcacaggctgcgccgcgatttccactctcccgccatgcgccgggtggttcaggagttcgtccgggcgtgcgacacatgccagcgcaacaagtctgagcatttgcacccgggcggcctgcttcttcccctgccggttccaactacggtgtgggccgacattggcctcgacttcgtggaagctctgccccgtgtgggtgggaagacagtgatcctcaccgtcgtcgaccggttcagcaagtactgtcatttcatccctttggctcacccctacacagctgaatcagtagctcaggcgttctacgcggacattgtgcgcctccacggcataccccagtccatggtgtcggaccgggatccggtgttcacgtcatccttttggcgcgagttgatgcggctgaccggtacaaagatgcacatgacgacggccatccacccacaatctgatggccagacggaggccgccaacaaggtcatcgtcatgtacctgcggtgcttcaccggcgaccgacctcggcagtgggttcggtggctcccgtgggcggaatacatctacaataccgcctatcagacatctctccgcgacacgccgttccgggtggtatacgggcgcgacccgccgatcatcaggtcctacgagcccggcgagacgcgcgtggcggccgtcgctcgctccatggcggaccgtgacgagttcttggccgacgtgcgctaccggctagagcaggcccaggcgacgcacaagaagtactacgacaaaggccaccgtgcggtgtcctacgaggtgggcgacctcgttctcctgcgcctccgtcaccgcgccccggcatcgctgccccaagtgtccaagggcaagctcaagccccgctacttcgggccctaccgcgtcgtcgaggtgatcaaccccgtcgccgtccgcctcgagctcccgcctcgcgcaaagctccacgacgtgttccacgtgggcctactcaagaagttcgtgggagctgcgccaccatcgcctccggcactgcctgctgtccaccacggtgccattgatcccgagccagagcgcgtcacccgttctcggctagctcggggcgttcgtcaagttctggtccactggaagggggaatcggctgcgtccgccacatgggaagacctggacaccttcaaggagcgttacccggcgttccagctcgaggacgagctggctctcgaggaggggagagatgtcatgtggggccgaacctatgccaggcgccacagggcacgggacgtgcgccgagccggcgaacgcgccgcggcgcgcgcgcagagcacgtccagggagccacagggccaagtcaacaatagtggctagaattaggcatgataagattagtttctattttaagttagttgctctttctgttcctaagattgaggagatttgttactcccgtagtcaggggccgccggccatatatgctgtaatcagagattgagaataatcaagcaatcagttccaa</dnaseqindica> |
| External Link(s) |
