Os03g0422800

From RiceWiki
Revision as of 12:43, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0422800| Description = Curculin-like (mannose-binding) lectin domain containing protein| Version = NM_001056925.1 GI:115453578 GeneID:433314...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0422800

Description

Curculin-like (mannose-binding) lectin domain containing protein

Version

NM_001056925.1 GI:115453578 GeneID:4333141

Length

4241 bp

Definition

Oryza sativa Japonica Group Os03g0422800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:18235250..18239490

Sequence Coding Region

18237169..18239376

Expression

GEO Profiles:Os03g0422800

Genome Context

<gbrowseImage1> name=NC_008396:18235250..18239490 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:18235250..18239490 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttctcaaggactacgatggcactgtggtgtggcaatcagacagcaactcaattgatgtccagtatgctcaacttctggacactgggaatcttgtcatgaagaactcgagtggtaaggttgtatggcaaagttttgattcacccacagatactctgctaccaactcaaaaaatcactgcagctacaaagttggtctctactactggtttatatgttcctggtcactacacatttcatttcacggattcatcaatactgtcacttatgtatgatgatgctgatgttcatgaaatatattggccagatcctgaccgtggagagtatggaaataagaggaaccgttataacaatactaggatggggtttcttgatgataatggggattttgtttcaagtgatttcgctgatcagcaaccattttctgcttctgataaaggttcagggatcaagagaaggcttactctagaccatgacggtaatctccgtctctacagcttgagtaatggggaatggttggtttcctgggtcgcaatatctcaaccatgcaatattcatggtttgtgtggtccaaatggaatctgtcattactcgcctacgcctacatgttcttgtccaccaggctatgaaatgaatagtcatggtaattggagccaaggttgtaaggctatagtagacatctcctgtagtgttgcaaaagttcagtttaagtttgtgcatcttcctgatactgacttctggggatctgatcaacagcttgttaaccatgtatcttggcaggcttgtatgaacatatgcaggagtgattgtaactgtaaaggttttcagtacctaaaaggggaagggacatgctttccaaaatcattccttttcaatggaagggcatacccatcacactttgtgtcaccacgcaatatgtatcttaagatccctataagcatgaatatttcaggtatgccagtatcccaatccaatgtgcttgattcaagaaaacatagccttaattgtgatcagatggatgaaaaaactagggaactatttcccgatgtgcacaagacaagtcagggagaaacaagatggttttacttgtatgggtttgcgggtgcgatttttattcttgaagttttctttattggatttgcatggttctttgtttcaagatgggatctggatgcattagaaatacaagcagtcgagcaaggttacaaggtgatggcaagtaatttcagaagatataattataaagagttggctaaggcaactagaaagtttaaatgtgagcttggaagaggaggctcaggtattgtctacaagggaaccttggatgatggtcgagtagttgctgttaagatgctggaaaatgtaaggcaatgtgaggaagaattccaagctgagttgcgcataattgggaaaattaaccatatgaatctggtaaggatatggggattttgctcagagaactcacacaggatgctggttaccgagtatatcgagaatgggtcattagctaacatactgtttaatgaaaacattttgctagagtggagacagcgatttaatattgctgtaggtgttgccaaggggctagcctatctccaccatgagtgtctagagtgggtcatccattgtgacgtgaagccagagaatatcctgttggacggaaattttgagcctaagatcgcggactttgggttggcgaagctcctaaacagaggcgggtccaatcaaaacgtgtctcgagtgcgagggaccataggttacattgctccagagtggatcagcagcctgcaaattactgcaaaagttgatgtgtatagctatggagttgtgctgcttgagctggtgtcaggaaagcgagttctggatttggctacaagtgctaatgaggaggtgcatgtagtgctcaggaggcttgtaaagatgtttgccaataacttgagtggaaatgaaccatcttggattgcggagtttgtggattgcaggctaagtggccagttcaactacacgcaagtaagaacaatgatcacactggctgtcgcgtgcttggatgaagaacgaagcaaaaggccaacaatggaatctatagtgcagctgctccttttggttgatgaatcttgtagcagtaatgttctatgtcctgagatgccaacaaggtggacaactggacacgccaaggcaaatgcaagtttttgtattcatagtttgtag</cdnaseq>

Protein Sequence

<aaseq>MVLKDYDGTVVWQSDSNSIDVQYAQLLDTGNLVMKNSSGKVVWQ SFDSPTDTLLPTQKITAATKLVSTTGLYVPGHYTFHFTDSSILSLMYDDADVHEIYWP DPDRGEYGNKRNRYNNTRMGFLDDNGDFVSSDFADQQPFSASDKGSGIKRRLTLDHDG NLRLYSLSNGEWLVSWVAISQPCNIHGLCGPNGICHYSPTPTCSCPPGYEMNSHGNWS QGCKAIVDISCSVAKVQFKFVHLPDTDFWGSDQQLVNHVSWQACMNICRSDCNCKGFQ YLKGEGTCFPKSFLFNGRAYPSHFVSPRNMYLKIPISMNISGMPVSQSNVLDSRKHSL NCDQMDEKTRELFPDVHKTSQGETRWFYLYGFAGAIFILEVFFIGFAWFFVSRWDLDA LEIQAVEQGYKVMASNFRRYNYKELAKATRKFKCELGRGGSGIVYKGTLDDGRVVAVK MLENVRQCEEEFQAELRIIGKINHMNLVRIWGFCSENSHRMLVTEYIENGSLANILFN ENILLEWRQRFNIAVGVAKGLAYLHHECLEWVIHCDVKPENILLDGNFEPKIADFGLA KLLNRGGSNQNVSRVRGTIGYIAPEWISSLQITAKVDVYSYGVVLLELVSGKRVLDLA TSANEEVHVVLRRLVKMFANNLSGNEPSWIAEFVDCRLSGQFNYTQVRTMITLAVACL DEERSKRPTMESIVQLLLLVDESCSSNVLCPEMPTRWTTGHAKANASFCIHSL</aaseq>

Gene Sequence

<dnaseqindica>1920..4127#gtgctccaccaccggtgaggtcacggccgccgcctccgcacctcgcggactgctcgccggcgcggccggtgcccggcggctctcggttcctgccgcgacctcaccgctcagcccggatgtcctcctctacggataaggagctgcacgacgcacagtggtactatcagaactcttcctccccaatccctcctcctcctttctctctcgctcaattaggttcttcaccaatgctgtgggtggattttgggggttgtcctgctgctgttgttctccgtctaatcttgtacgatctggttcgtttagcatcatagtggcaaattgcagaatgcgtaaccctatcgtgcttagtaacttacttaccatctaattttgctgtcaagcattgaggctttttttcgtgcaaactgcaaagttctgacacgcgaatagcattggagaaaagcttttgtttcaataaaaatgacgctagtacctaggagtaggtaccttttctattcagagaaaggaattatcaacgttttttttcttttcgttgactgttaaacttcagtataattatagtgcagattctgcaagtccggagtacggattttagaatccatgggtagagcatgaccgtccattcagaaaatttatttagaggtattttatttgaaaatatcaagtgaactcttaggttattaggtaggagcaatctactagtcaacatgcagttgtttggtagaactatatattactcaatatacagtctgaactctgaagtgagtgtccatcacatctcttcgctttcttttattaactactatcaaatggaaggagcttggactattcgattaagagctaagaactgaaaagaacttctacaagcaataggaataggggcttaagacaatggtttgcattacacgggcttaagaaaaagactgtcagacaatataagtgttaattttctctggaaaaattgaagttggtaaaacgaatcacctgttcactgatatggataagagtatactagttaggatagtttcaagctttcaagcccatcaaattgatttaaccgtttcttccaagaattgacacttcccttggtttttggctcactgtttgcagatttgactgtttcttccaataagtgacacttcccttggtcttctgcccactgttcacatcaatccagctagatgttgccttccatggtctaaaatttgcattgatcacaacaatacgcctagaagctaaaagataatatacacatagttgaacattaaagcgtacttttctgacttcaactaggtgcatcaattaatatttttgtatttttttcctgtgcttttcgaagcaagttcctagccagctggcagtagcattttcattagtgctgtcaccattatcacatgctattaatatgattattggtaggctcaaatcagatcattacaagcaagcaaaatgaccatatatatatataatatatcagatgtcctgaacacatgcaaacagtcactgcctgtggacatcacgaggcataggacaccaaccttctattgaatataagaatgaagcaaggaggtatgagaagaaattggacatactgctcctttggtcatcctttcaatccacccatggcacccttcttctccatcctccctgctctatcattccttgctctgctcccaattgtcatgtctcgtgacaagataccactaaaatcctctctatctgttgatgattaccagaatgatgtcctacagtcagctgatggcactttctcctgcggcttcctcaccatctacagcaatgcttttgccttctcaatatggtataccaactcaaaaaacaagactgttgtctggaccgcgaaccgcggacgccctgtgcatgctaggcgctctgttgttaccctgcagaaggacggtgccatggttctcaaggactacgatggcactgtggtgtggcaatcagacagcaactcaattgatgtccagtatgctcaacttctggacactgggaatcttgtcatgaagaactcgagtggtaaggttgtatggcaaagttttgattcacccacagatactctgctaccaactcaaaaaatcactgcagctacaaagttggtctctactactggtttatatgttcctggtcactacacatttcatttcacggattcatcaatactgtcacttatgtatgatgatgctgatgttcatgaaatatattggccagatcctgaccgtggagagtatggaaataagaggaaccgttataacaatactaggatggggtttcttgatgataatggggattttgtttcaagtgatttcgctgatcagcaaccattttctgcttctgataaaggttcagggatcaagagaaggcttactctagaccatgacggtaatctccgtctctacagcttgagtaatggggaatggttggtttcctgggtcgcaatatctcaaccatgcaatattcatggtttgtgtggtccaaatggaatctgtcattactcgcctacgcctacatgttcttgtccaccaggctatgaaatgaatagtcatggtaattggagccaaggttgtaaggctatagtagacatctcctgtagtgttgcaaaagttcagtttaagtttgtgcatcttcctgatactgacttctggggatctgatcaacagcttgttaaccatgtatcttggcaggcttgtatgaacatatgcaggagtgattgtaactgtaaaggttttcagtacctaaaaggggaagggacatgctttccaaaatcattccttttcaatggaagggcatacccatcacactttgtgtcaccacgcaatatgtatcttaagatccctataagcatgaatatttcaggtatgccagtatcccaatccaatgtgcttgattcaagaaaacatagccttaattgtgatcagatggatgaaaaaactagggaactatttcccgatgtgcacaagacaagtcagggagaaacaagatggttttacttgtatgggtttgcgggtgcgatttttattcttgaagttttctttattggatttgcatggttctttgtttcaagatgggatctggatgcattagaaatacaagcagtcgagcaaggttacaaggtgatggcaagtaatttcagaagatataattataaagagttggctaaggcaactagaaagtttaaatgtgagcttggaagaggaggctcaggtattgtctacaagggaaccttggatgatggtcgagtagttgctgttaagatgctggaaaatgtaaggcaatgtgaggaagaattccaagctgagttgcgcataattgggaaaattaaccatatgaatctggtaaggatatggggattttgctcagagaactcacacaggatgctggttaccgagtatatcgagaatgggtcattagctaacatactgtttaatgaaaacattttgctagagtggagacagcgatttaatattgctgtaggtgttgccaaggggctagcctatctccaccatgagtgtctagagtgggtcatccattgtgacgtgaagccagagaatatcctgttggacggaaattttgagcctaagatcgcggactttgggttggcgaagctcctaaacagaggcgggtccaatcaaaacgtgtctcgagtgcgagggaccataggttacattgctccagagtggatcagcagcctgcaaattactgcaaaagttgatgtgtatagctatggagttgtgctgcttgagctggtgtcaggaaagcgagttctggatttggctacaagtgctaatgaggaggtgcatgtagtgctcaggaggcttgtaaagatgtttgccaataacttgagtggaaatgaaccatcttggattgcggagtttgtggattgcaggctaagtggccagttcaactacacgcaagtaagaacaatgatcacactggctgtcgcgtgcttggatgaagaacgaagcaaaaggccaacaatggaatctatagtgcagctgctccttttggttgatgaatcttgtagcagtaatgttctatgtcctgagatgccaacaaggtggacaactggacacgccaaggcaaatgcaagtttttgtattcatagtttgtagttctatctcattgtatggaaattcggaaactcttgtacttcaaactctaggcattcatttattcagatgtgctgcatattccttcacaaattataataaagtatgctattcaag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0422800, RefSeq:Os03g0422800