Os03g0562000

From RiceWiki
Revision as of 12:45, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0562000| Description = Conserved hypothetical protein| Version = NM_001057024.1 GI:115453776 GeneID:4333254| Length = 6192 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0562000

Description

Conserved hypothetical protein

Version

NM_001057024.1 GI:115453776 GeneID:4333254

Length

6192 bp

Definition

Oryza sativa Japonica Group Os03g0562000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:20941889..20948080

Sequence Coding Region

20942232..20942483,20942584..20942741,20943115..20943153,20943255..20943321

Expression

GEO Profiles:Os03g0562000

Genome Context

<gbrowseImage1> name=NC_008396:20941889..20948080 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:20941889..20948080 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcagatgcaagagctggaagtacaacttctactaagcttcaacgcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataa</cdnaseq>

Protein Sequence

<aaseq>MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLEL CFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPL MDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNK TTRLEATFDVL</aaseq>

Gene Sequence

<dnaseqindica>5598..5849#5340..5497#4928..4966#4760..4826#atcgtcgtctccttcggctcgcgtcgccactgccgccgctttctccaccgccgtcgccaccgcctccccctcgcgccgccacctccgcctccgcctccgcctccgtctccacctccgcctccgccgccgccgtcgcgccgccatctccgagctcctccgcctccccctcacatcgtcgccgtcgcggagcggcggtgaaggcgggtgctatctccatcggcgacgaggtcggagcaccgacgaccacgccacaggtcccagtctccctcgaccctagcagccgcccttagccctccgccctctgccgcctctgtcccatccgccgccaccgtctccgtctccgtttccgtctccgctccgcctgcgccgttgccgagcgtctttccctcgcggcacgccgtcgccgtcgctgggtgcgccacctctgcatccgcctccatctcacgccgccactgccgccgtcgctgccgaccgccgacgtctggatccggcctctggctcggcggggtccagctcggtggtgaggagatccaaggccgtcgagcgcatcctggatctccggcaccaatgaccgcgcgcatggaactggcagtggcagtgaggagcacggtgacggcgcgccaatttctgagataagttttttgcggtttgtactagaaagaatagcccttccaattttttctgcgtcgcccattggatgggaggaggttagaagaagatagaggcagtgttatacagggttccaccgggtggcttctcatggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtggggtactttctttcttaatctaggcaactcgttggtccatttttgcttgattttgtttctgcttatgatggttgaaaagaagtttggtctttgcagcttgatgtttcccctttgtgactgttttcatgtacaggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatggtgattatccctcttccttaatctccctgtcaaatatttgctgttcagagtgttgaactcaatcaactgcttatattaactaatgaaagtttggtactttggttccaaggttcttttgtcctgcactgcccaaagctataaaaaccatgaaaaaaagcagacaagttgctccttacagctaaaccatgaaaaatattattcagtttacttactaaaagcaatctatctcttctgtcatgcagatgagaggcctcctgtgatttacctgtaggatcatgtgagaatacaccaatctgcaggcggtatacattcatttatctgttttttctggaaatcctataggagatgcaattctgtcaacataagtgtgtatagtgtgttgtggagtctgatcgaagtgctaagcattcatactcagttctgtgtccctgaaacttaattttgtatgtagattaactatcacagttgtctctgaagtgatgatacacttctttttttttaaaaaaaaacttatatctcgcaaactgacttaacctttgatatcaaattatttaatatgtaggaaaaaaaaagttcagattgtcgaagcaaagctgactggacaccatgccaattgctattgtttactgcacaatcaaggagatttttggctgattctactaaatttctgtttggtaaaggtaatttccttccatcatgattaccccttacaaatagtgcaaatgtctcctgcatggatcaatcttcgctaaatggtctgtaaacatttctactgcaccatgctaagggttaaattgtagccatccagtcaagaatttctttctttgaacctacagtaccttggacatacaagcagatttctctttgtgctgatgtcatgtgccgaatacttcgtaacaagggagttgtgtgggctgttaggattcacgtctcagtcattcagtttctattctagatagcaaaatttgctatagggcatccaaaaaacgtgtaatttcacaatgtgtctgtgattaaattaaactgattactccaaataaattacaagaaccacatccacgtagcttattaatttgcttaggattacaaatgattccgagcgccacagtcagtcctacaagatcagcgtcggcagtcctctctgccctggtacaatgcgagctccttcctcttcttgatctatcctcaattggactaaagtcttagaaaaaaatacaacttgttgatcatgcagattaaggagtgcttgaacaaggttgcctagacggtgtttttcctcgctcatcctgaaagccctgatcctgaaggttcattccttctattactgacatcataactgaagcttgcaacagtttatgtgtcatattaatgccattggtattcaatccatttcctgataatatagaattgctcttattttccttgtaaaattatgtgcaagcagtaagattttaaattggttattgtcttcatgatcattggctcttttttttccaatgaagtgtattgaactagagcaaactgttactctgaacatgtcaaatcggtcatttatctgaatttataaaatagcgttaacttcctttttcgttcacaaatttcttgctttgcaatcaatataaattcagacaaattttcaagctgttaatatatcaatgaccactacatatcctatagcaactaattaaatcttctaataatggagatatttactaaaatataatggagatatttactaaaaataagatggtgttacttatttcagattcagcacatgatttatatttcagattttgtatataactcagtttaaagttcagaatgtaaataggcacaatatttagttgaatcatttggaaataaaacatgcttatgctgaactgctggtatccctatagactgaacagctagaaaaacatgcgtacactgaactgctgataagacagtttaagttcaaacatttattaagtatactgaatcattgggaattcctgtagattgcttccccatttgaattttactgacattacccatgtactgtatcaatgttaaattttggttgcatcaataaatcttctacttgttaccagcatctttgtcgcacctacttaatttgtttgatataacgaaatgaacaaggatgtgaactacagttggtacactgaattgctaagagaaatgcttgtaacaacatgtatattgttgataatattaagtattttcagtaaatacctaagcacaacctgtactgattcactatgctatgctaaggtgcatccatacatgctgattctgtgctctcatcccattattctttgacgcaagatgatcaaccctgattttgtatgtgatgtctaaaaatttgcaaaggttgagtggaactgatttttgtatgatcaaaccattattcattgctcatcccagttttagactagattgatcaagattcatcactgatccaaattttgccatgaattggacgaggttgataaagataattgtatgatttcaggcctaataaagttgtatgctttagaatggtcaattaattgcatgttttagacccaagaaaattgaaattaaactacggatcttattttatgaaagatggcttctgtactcagctcactgaatcaggttttttaattgaactctccgatacttaagttaatgtgttgaaactatgcttgattgctaattatatacttttagttttgccggatgtcatatgtgatgcttctgagggagcctaatgtacagcttgagattatttactcttaacctgatgcgctcatatgtgatgctcctggaggatatttatataaatcgatgtcgtcttctcaaattataatttactgtttttaataatttgtactggcatatcaaattactgtttttaataatttgtactggcatatcaaattaactgatgtttttaataatttgtactgatatatcaaaatcactgttgttacgcttcatggctcataataaatcgctggtgcattgatatctacatgttttcacatttgctatttacagctcaggtactttcagtgaacatgaagcttactcataaggaatcaaaccaattgtgaagatagcaggtactctgagaattgacagagatgagagtctggctaaatagtcagccatgtgaaatgccttaatgaactctgtatttcgatagatgagatagctcatttaggcagtacatacatgacgtgggttcttcgatccattcaaactctagtgctgatccatttatagatatttctcccttgcatatgctctttgcattgactcccaaccatataacattgcggggccctaaaatttatattactacctacacgaaatcagtgtaatgcacaatttattttttatgtagatatattgtactcttaaatttgtttatacaaatgatttttatttttaggtaatacaatattgctaaagtacctaaatgaaataaatgtgacatgatatccaactagcaattttcgattagatgaaatgttatgtgatttgtttgtaaatcacattatatgtttgttgtggactaaggtagattgatgttttatcggataggaatggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcaggtattgtgacatgtatatattttggactttctttgtgatctctacatactcccatcgcatatattcatataccttgtctgctgatttttcgataagcatagatgcaagagctggaagtacaacttctactaagcttcaacgtaagaaggagatgcttattaatatcatattattatgcattatgacacgggggcacatatatatgcattatatatgtgcatgaattggcatatcatattattatactttatgttaaatatatttgtgcatgacataaattgaattaaagctcaaatgtaccgttcatatagtaatattttttgctaacatgaaaattttaaaaattattaaagacaaatagaattacaccgtagcatttagcacgggcatattactagtagatgttaatgtaccagctgcagcctgcaaaaactctctccatcagcaactttttaatgctcattcagttctttcacaaacaatgcaaatactaatagaagtattttcatacaggcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagttgtaagttcctacacctgctgctcatttatttatatacaccatacatggctatctatcttaccaattataagtcaaggctgatatacaatgccaattacagtactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataaagaacatagcaatactcatggctatgttgcagccattcttttgctgccaccaaccaggttgatcactgtcaagataacctgtattagttctaggccttacatggtaatcatggaacctcctaatatgaagaaacatctatatatgtacttactgctattagagacctctaaatatcaagatgcctgtgtgtaatttgtactatggacacttcctcatactttctgcccctgcttgcgtccaggcggcgcgccaacggcgcgcccctagctctagtgtgcttgtatcaatcaaacaaaatgttgacacatacagtttgtgctaaatctgaacatatttttcttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0562000, RefSeq:Os03g0562000