Os03g0565200

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Revision as of 12:45, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0565200| Description = Haloacid dehalogenase-like hydrolase domain containing protein| Version = NM_001057034.1 GI:115453796 GeneID:4333266|...")
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Gene Name

Os03g0565200

Description

Haloacid dehalogenase-like hydrolase domain containing protein

Version

NM_001057034.1 GI:115453796 GeneID:4333266

Length

7418 bp

Definition

Oryza sativa Japonica Group Os03g0565200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:21139778..21147195

Sequence Coding Region

21139811..21140128,21141255..21141325,21142589..21142747,21143258..21143324,21143573..21143668
,21144347..21144393,21144773..21144853,21146848..21146971

Expression

GEO Profiles:Os03g0565200

Genome Context

<gbrowseImage1> name=NC_008396:21139778..21147195 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:21139778..21147195 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccccgccgccgcatcatcgtccgcgctgctccccgcggggaccttctccaccgcccgccccgtcgcgggccggcccgccggccagcgccttcccacgagggtagccgccgcgagcaggacgacgacggcgcgttctcctgccgcctgcctctccgtcgggggcaggaggcggggagcggaggccgtccgcgcgtccgcggggggagcgccggccgcgtccctcccggcggcgctgctgttcgactgcgacggcgtgctggtggacacggagaaggacggccaccgcatttccttcaacgagacgtttgccgagagggaattaggtgtgagctgggatgttgagctatatggagaattgctcaagataggtggcggaaaggaaaggatgacagcgtatttcagcaaaatggggtggccagctaaagcaccaaagactgacgacgaaagaaaggagtttattgcttcgctgcacaagaggaaaacagaattattcatggctctgattgagaagaagttgcttcccctccgtccaggtgttcaaaggttaatagatgaagccctaggaaaaggagtgaaagttgcagtatgcagtacttcaaatgagaaagctgtttcggcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctggagatgtggttcctcgtaaaaaacctgatccagcaatctacttacttgcagcaaccacacttggagtcgatccatctagttgtgttgttgttgaagacagtactatagggcttgcagcagccaaagctgctggtatgaagtgtatcgtaacaaaaagcggatacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccctccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagctga</cdnaseq>

Protein Sequence

<aaseq>MAPAAASSSALLPAGTFSTARPVAGRPAGQRLPTRVAAASRTTT ARSPAACLSVGGRRRGAEAVRASAGGAPAASLPAALLFDCDGVLVDTEKDGHRISFNE TFAERELGVSWDVELYGELLKIGGGKERMTAYFSKMGWPAKAPKTDDERKEFIASLHK RKTELFMALIEKKLLPLRPGVQRLIDEALGKGVKVAVCSTSNEKAVSAIVSCLLGPDR AEKITIFAGDVVPRKKPDPAIYLLAATTLGVDPSSCVVVEDSTIGLAAAKAAGMKCIV TKSGYTAEEDFATADAVFDCIGDPPEVRFDLEFCANLLQKQFVS</aaseq>

Gene Sequence

<dnaseqindica>34..351#1478..1548#2812..2970#3481..3547#3796..3891#4570..4616#4996..5076#7071..7194#ttttccttcgccagttcagctcgccatttcgccatggcccccgccgccgcatcatcgtccgcgctgctccccgcggggaccttctccaccgcccgccccgtcgcgggccggcccgccggccagcgccttcccacgagggtagccgccgcgagcaggacgacgacggcgcgttctcctgccgcctgcctctccgtcgggggcaggaggcggggagcggaggccgtccgcgcgtccgcggggggagcgccggccgcgtccctcccggcggcgctgctgttcgactgcgacggcgtgctggtggacacggagaaggacggccaccgcatttccttcaacgagacgtttgccgaggtccggttccttcagccccggtctcgctaattttggtttgatgacgcgtttggcgattgctccgcaggtctaaagtgttggtgtcgcttatgtttggtaattactggaatcgacgtcttgttgttcacggattaatttgtttctgcggagtaacgaacctaaatcatgtgaaaatgttgagtagatgatcacctagtactagtaatattacttcaactcggatcattggaatgcctaattcaaattcattgattgcctaactgcactgcaatttacatttaggggctgtttgcttacctgcagcgcaatatacatttaggggttctttgggagaatgatttttatctctcgataagtagtgatcaattttaaaattgagaaattctacttctacaagttgtaacaaaaaggaaaaatcaagctgaaactattatacgtggattcacagttatatatgttacaacttgtaaaagttgaatttgattttcatgtttgtatagtgatatatcacatattaatatacattcaagaaatgaggggacatcgacacaaacttttccctgttgtttatccgattaccatattttaataaataaagtcaactatgttcaattgttctgtttatttcattggccatctctgtcgctaagtaaccccatttttctagcacacttccgaaatactcagtctcaccaaaccttgccatagctgcagtgagcggcttcttcaccacaagtgtgatttacctgatatattggtagaaataggttggttagtgtggccatcaactatggagcatatccagtgaaaacgggctgtgttgaagaaggtacattgtaatttcttccacctggacacctagttcaagccgttgttaatcttccttaggtggaaatgaaagagcgacctgggatacctgtacttacaatagaaaactgtaatacacttttcaactgcaactattgcgttaacacaaaaaacaataggcagttattaaaccttttttttcttctttatgatgaaccgtggatgaaaaacaactgtcaactgtaatacatatgattttatatcatttaaagggtacctactgactgaaatatcaaactgcgtgttttgttgtttacagagggaattaggtgtgagctgggatgttgagctatatggagaattgctcaagataggtggcggaaaggaaaggttaatcaacactttgctgctttctttcatttgttggcctgccaaaatcctagccattcatttgcattcttcaatacaaacaggcgtttcctcgaaacatgttttgaaaatgtagtttgtgcccatataggttatatctatactcctttaaaagaccccaatagtggtggtgagtggtgaatctgccaccacccaccaccactaccatgtgggtcccccaaatagtgagataggtggacttttatcccatcccccaaccagaagccatcaaacaaggaaaatttattttaaagtgagatacaaaatgatgaaaaatatgattgaattatttacagtggatataattttattttaatttttgaggttttaaagtctttttttaattcccgttgcaacgcacgggcattcagctagttctgtatgaaatctgtagttatcaacctgaaactgtaagaaaaaaaatatgctgctccgttactgtgtcaatttacatatttacacttagtcactactgtgaacacataaatgataaaacaatagtgttaaatgcacaagaaaaaaattaagattttgcaatccatctccttaattatgttgtatacatctaaacagtttacgctttccactaattgttcacataacagatttgcaatttattattgattctgactattatcttgactggtaggggaaacattaaaatgcattttaccactggcatttactaaggatattaaacttcggtaatcagtgcaagaacttcactgtcctttgctaagtctattggcttatgttgatatgaaaggttaacaaatattgtctctggggcagggacatcaaaccatttgtttgttctaacacaaagaacaacatggactgttccgtttgtgtataaaggcatcataagtgtatgctttttcacggaaactaatagttattacctaaagaaaattcaaacaatctaattatcgccaagagcaatatcaagatgtccagggtgaaggatcatcaaatcgaattttgcttatccaattgaaactaaggacctaatcatcagcagtgtagagctgattatttagcattggaacttaatgatttaattgtccattagtgtcagatgttagaacatgctttttggcaatggtgatactaaaagagctacactaagaacaatgatttatagttttatgttggttccttttatgttttcctgtaaataaaattgaattttctggttgaatttaactctagcacctatttcaggatgacagcgtatttcagcaaaatggggtggccagctaaagcaccaaagactgacgacgaaagaaaggagtttattgcttcgctgcacaagaggaaaacagaattattcatggctctgattgagaagaagttgcttcccctccgtccaggtgttcaaaggtcatatattttacatgaatttggactttagcaacttaatgcacttcaaaagttctaacacttcgatatcctgctttgctactttaatacaagtcagttattatgtcttgtggatagccattagcaattgttcatctttaactctcatttgcattctgcaacatttcattattcttttgctctttctcaaactatgtataaactgcagttatattctagttgtagccaagctatttttctttgctggaaaactaaatgcatcttaattaatattgcttcttgtacttacaattataacatgaaatcatgacgataattgaaacaagctttacagaagtaatatcatgaacttcactgttttactttctgttgaggaagtctgcactacatgcattaggaagacataacaatccaatcccactatggaatgttgaatttactaacttcggaatatgttgaagtaaattagtatggggtaagttacctagatgttttaattacaatttacaggttaatagatgaagccctaggaaaaggagtgaaagttgcagtatgcagtacttcaaatgagaaagctgtgagtaacacaatatttccaccttaaatgtacttttatgaagttaattgttaggattggtaataacaattgttttcattttttatgaaatctttcttctgattttttcataaggaaatactccaatagtttcttataaaaacttaatatgtactatttttcacactttttaaatagtagtacatgttgatagtagctgtgaacttgtatgccagatagctcacatatttatgcttgactgaatgcaggtttcggcaatagtttcatgtttactgggccctgatcgtgcagaaaaaattaccatatttgctggagatgtggttcctcgtaaaaaacctgatccagtaagttattttttaattcaataaatactaattctatcaaacaatattctatctagttctttatgggaagaaaaattatttcgaagtgtatagggcatagaattataaactaatatgatagtttaaactactagtgttccatcagtatccacgggaaaatgtgtaatgtcttgtaccacactatgctcaatcttaaaaggaaaattttattttacatcactgaaaccacatgattagcgcttagatactttgtgccttccaatttccaaattagttgtgttgagagaatacggtgttccaagcaagcacactacaaccaaaccctgaaaagaaataaagagaacttgccagcagcagtggtacaagtgctgtacctgagcggccattatttatttattatgatatggcccagatagtgccttcctttgaaagttgctggttcactcaaatgaaatcatgatagtttaatttgatgtttgctggattgatgatgattccttcaaaatgatccttacatttatttaataatagtatgttttttttatgaagatcaactcttctttcaaccaaattaagttatatttgcttatgtaggaagtaattaacttttcttgtgctataattggattcctggatttcatttctcacgagagagtatgtttctttttatctttgcaggcaatctacttacttgcagcaaccacacttggagtcgatccatctaggtaaggaatgcctgggtttctttctgttgttctgagtacaaatgtttaatgactgttagtacaaacttgtaattaatatttgtagagtctactgattaatgaactagcttggttagatgttaattactgcttgacaactctcataactgttaatccattcaaatgtaaaagaaatattgtgcgtcctttaacattatttttttaagttacattttttttaaaaaaatgtttttataagtaagcaattctagattatttttccagtaaaaaaatataataaagctttgtcgacatatgatgtattttgtaataaataccatttttatcaacagtttaatagtttttcagtttactaacaccttttttcttggatatttagttgtgttgttgttgaagacagtactatagggcttgcagcagccaaagctgctggtatgaagtgtatcgtaacaaaaagcgggtaagattttttttttccatgaaatatttcagttgcatcaaatcgctttcactaattttgcatgtattccataataaaggcatctgttgatctcttctgggtggaagccgattggattatcattagctgtagcaatagtgacagtattcttcttctttttcttttttttttgaaaatgcatgagacctgtgcttcatctcattaagaaggaaaataaaccacccatacaaccaagggctcacgagcccttcacagatccacaaacagcaaggtgacacacgaccaaaaccactctactgcagcctagtgcccttgggttagcgacctacaaaggaaaacttggaacacaagagctccagtcaggcaccaaactagcttctattgatactgcccacaacacctccatgatgtatggatttgctctgttgaaaacgcagtcagtacggtgtttccaaatttcccaagcaactaggatgatcaatgaattcagtcccttttactgctccttaggtacattcttgacagctttccaccaccatttagcaaaacgagttaccgaaggttgaggggcagaggggcagcaaccgccattcccagcttcaagaaaatcaaggtctgaacttgccgagagaagacacatgagacaaggatggatggttacgtccttttgatcacatagtggacaggttgccaggtgtgctagtccatgtttggcaagtcggtccactgtccaacaacgattgtttatggccaaccataggaaaaacttgcagtgtagaggagcccaacttatccaaatacacctccaaggggcatacttgatggatccaagaaagtaagcattctaggctgacttgctatgtgtagggacctgtagttgataacttccatctctgttggtccggcacatcattttgtagagataacccatccaccatgtcccaaatacgaaggtattcacaaataaccttttttttcgataatggaagctttattaaaactcagtcaaatacaccaagatgatacatttcaactgagcccactcccggcctctgcataagatgcacacagccacacacaaagaaagacctatgtatacccccctcacgaaacaaaaaatattagtggctatcaatccgtagactagatcaccaaccatgctcttgggtaaaaaattctagtgccacctggtccaaactttgcggtaccaccacaatagtatcccgaagacccggtttgtagaggatagccaaggtgcgaagccatcgggtgactaaagtaatagcctgcaaaggagaagacaccatcttgttatcaaaaattaccccatttctacttagccaaatggaccaacaaagagctgttgcacccatcaaaaccagatttctcatgtctttaggaacacatgtaagccaacacccaaacatatgagtcacattttgaggaggttgtaagttataggccatatgaataacagaccaaaccaagagagtaagatgacattggaagaacaaatgttgaatggtttcgtccttatgacagaagcaacatttgttactacctttccactttcgcttagctaggtactttgtaagcctgagttgtaagacctcctttagtatcatccacccaagtaaataagacttgtgccactgtgcaatgtttccttgcccttcggagagccttcccagaaagatttgggggtttggggccaattctgcagttgttttgcctttcagccatctatcagtccagaatttggtattctccccattaccaattatgcattagctaattaactgtatatgtaggacaaccctgaatgtgctattgaaataggtagattaggttgctgttaagtttctattttatgttattcgtcattgctttcttctgttctgatctttcaatctaaataaataatacgtgagaattattcacctcatgttccaatgaaatgtacgtgatattatgtttttgggggcgctgtgcagatacactgcagaagaggactttgcaacagctgatgctgtgttcgattgcattggtgaccctccagaagtacgctttgatttggagttctgcgccaacctcctccagaaacaatttgtaagctgaaggagcagacggtcaatttcacccatatcatataaattctataaattcttgcccaggattatggaaagcggaaatggtctctataaaatcattccaaatacaagagtcaagaggaacagcattgctttatatactattgatatttgttatttatgtatagaggagtacatatatgaacataatagaataagaaatcgaaatatctttaattgaaatttgttact</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0565200, RefSeq:Os03g0565200