Os03g0574900

From RiceWiki
Revision as of 12:46, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0574900| Description = Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2| Version = NM_001057064.1 GI:115453856 GeneID:4333296| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0574900

Description

Similar to Potassium transporter 1 (OsHAK1). Splice isoform 2

Version

NM_001057064.1 GI:115453856 GeneID:4333296

Length

7140 bp

Definition

Oryza sativa Japonica Group Os03g0574900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:21738772..21745911

Sequence Coding Region

21739047..21739301,21739484..21740289,21740417..21740671,21740767..21740881,21740961..21741013
,21741177..21741437,21742464..21742514,21742741..21742989,21744425..21744650
,21745628..21745792

Expression

GEO Profiles:Os03g0574900

Genome Context

<gbrowseImage1> name=NC_008396:21738772..21745911 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:21738772..21745911 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgacgatgtgctgggcagagggagccgacgagatcaggagatcgtcctcgtcgacatcgtcgacgatgacgatcacgacgacgtgccggcggtgcggcggcaggactccctgtacgtcgacgcgacgagagccggcggagcaaaccaccgtggaggccaggaggagagctgggcgaggacgttgaagctagcgttccagtgcgtgggaatactgtacggggacatcgggacatcgccgctgttcgtgtactcgagcacgttcaaggacggcgtccgccacccggatgacctgctcggcgccctctccctcatcatctacagcttcgccctcttcaccatcgtcaagtacgtcttcatcgccctccgcgccaacgacgacggcgacggtggaacgtttgcactgtacacgctgatttctcggcatgcgaaggtgagcttgatcccgaaccagcaggcggaagacgagctcatttccaagtacaacaccgggaagccgcaggcaacgctgaggagagctcggtggatgaaggagcttctcgagaccaacagagccgtcaagatttggctcttccttctcaccatcctagccaccgccatggtcatcagcgatgccgtccttacaccggccatttcagttctgtctgcggttggtgggctgaaagagaaagcaccgaacctgacaacagatgaaatcgtgtggatcacagtggcgactttggtagtcctgtttgcaatccaacggttcggcacagataaaattggctacctgtttgcgccgatcatactcctgtggttgctcctcattgggtgtgttgggatctacaacaccattaagtttgacaccggcgtgttgagggcgttcaacctgaaatacattatcgactacttccgaaggaacaagaaggatggatggatctctcttagtggcatactcctctgcttcacaggtacagaagctctgttttcagatctaggatatttcagcattagatcaatacagctaagcttcagctttggtctagtcccttcagtgttgcttgcttacattgggcaagcagcatacttgagagaacatccagagcatatagccaacactttctacagatcaactccaaacgtgatgttctggcccacgttcatcctggcagttgctgcatccattattggaagccaagccatgatatcctgcgcatttgcaaccatttcgcatttgcagacactcaactgcttccccagagttaagatactccacacatcaaggcaatattcaggacaactgtacattccagaagtgaacttcttgctttgtgtgggtgcttgccttgtaacaattggtttcaagacaaccgtgattattggagaagctcacgcaatatgtgtggtctttgtgatgatcatcacaaccctcctattgacaatagtgatgctcctagtatggaaggtcagcatctggtacgttgcactattcttcatcgtcttcatgtcatcggagtcgatctacttatcggcggtcctataccaatttgtgcatggcgagtatgtacctgtggccatgtcagttttcctgatgattgtgatgactgtctggcactatgttcatgtcaagagatatgaatttgagcttgagcacactgtgccccgtgacaaggtgaaggagctcttggagcgccgtgacatacagagggttcccggggtagggctcttctacaccgatcttgtgcaaggcatacccccggtgttccctcacctcattgagaagatcccttccatccactctgtgctcatctttgtctctatcaagcacttgccgattccgtcggtcgataggtccgagcgattcatctttcgacatgtcgacaaagaagagtacaaggtgttccaatgcgtggcgcggtacggttatcgagaccccatggaggaggccaaggactttgttgatgcacttactgagaacctccagtactacataagggatgttaacttctacactacaggcggtgatcaacatatattcaggagtaccagctatgccagttccattgctgaaagttttgccagctatgagaaacactctgggcatgcagtctatgcagaggagatgcttacaccagccgaatccttctctgagcatacaaagcaacttagtggcagaagcaagcattttaaacaatttcaggtagagaatatgaacatgcaaaagatggagaaggtacaacaggagcagcaggctatcctcagagagatggagaatggtgttgtgtacatacttggagagagtgacatagtggcaagccctcactcctcgcttcttaacaagatcattgtcaattacatctattctttccttagaaaaaactgtagaaatggcgagaagatgttgtctattcctcgcagccaagtactaaaggttggaatcgcatatgagatataa</cdnaseq>

Protein Sequence

<aaseq>MGDDVLGRGSRRDQEIVLVDIVDDDDHDDVPAVRRQDSLYVDAT RAGGANHRGGQEESWARTLKLAFQCVGILYGDIGTSPLFVYSSTFKDGVRHPDDLLGA LSLIIYSFALFTIVKYVFIALRANDDGDGGTFALYTLISRHAKVSLIPNQQAEDELIS KYNTGKPQATLRRARWMKELLETNRAVKIWLFLLTILATAMVISDAVLTPAISVLSAV GGLKEKAPNLTTDEIVWITVATLVVLFAIQRFGTDKIGYLFAPIILLWLLLIGCVGIY NTIKFDTGVLRAFNLKYIIDYFRRNKKDGWISLSGILLCFTGTEALFSDLGYFSIRSI QLSFSFGLVPSVLLAYIGQAAYLREHPEHIANTFYRSTPNVMFWPTFILAVAASIIGS QAMISCAFATISHLQTLNCFPRVKILHTSRQYSGQLYIPEVNFLLCVGACLVTIGFKT TVIIGEAHAICVVFVMIITTLLLTIVMLLVWKVSIWYVALFFIVFMSSESIYLSAVLY QFVHGEYVPVAMSVFLMIVMTVWHYVHVKRYEFELEHTVPRDKVKELLERRDIQRVPG VGLFYTDLVQGIPPVFPHLIEKIPSIHSVLIFVSIKHLPIPSVDRSERFIFRHVDKEE YKVFQCVARYGYRDPMEEAKDFVDALTENLQYYIRDVNFYTTGGDQHIFRSTSYASSI AESFASYEKHSGHAVYAEEMLTPAESFSEHTKQLSGRSKHFKQFQVENMNMQKMEKVQ QEQQAILREMENGVVYILGESDIVASPHSSLLNKIIVNYIYSFLRKNCRNGEKMLSIP RSQVLKVGIAYEI</aaseq>

Gene Sequence

<dnaseqindica>6611..6865#5623..6428#5241..5495#5031..5145#4899..4951#4475..4735#3398..3448#2923..3171#1262..1487#120..284#ggcagctagatagtttatcagaacggagagagattattatatgtctaccggagtactcgcttgtgaaccttgtttattagctagctgcccggttaaattatttgtgctatcagagagagatgggtgacgatgtgctgggcagagggagccgacgagatcaggagatcgtcctcgtcgacatcgtcgacgatgacgatcacgacgacgtgccggcggtgcggcggcaggactccctgtacgtcgacgcgacgagagccggcggagcaaaccaccgtggaggccaggtttgtttattaatttggccaaactgctgtccaattcattgatcatgtactaccattgtttggccaaactgctgtgcaaatgcttatgatcgatcgatcgatcggtcccatgcattccattatatatgttgttaaagacttggtgttttttttcttaagatgaagatgaagataaaaattaagtgttttacgcaaaacgaggtggtattaacgtatgattaattgagttttaattattacaaacttgaaaagaatagattaatctgacattttagagcaaattttatatagaaagttatcacaggaaatgcgccgtttagcagtttgaaaagcgtgccacaaatatctaaaaattgtatccacgtttttttattgctgttgtgtattcatctaataattctgtgctgaacattgaaaggttgttaatttggatccatggattttattgaagtttttagaattaaaaaaaattaaaactagttttatttggactcctggatagtgacagagatttcatgttttgttatctgtatgtatatatgtcagaaagccagaaactcatttcaacaaaaacgagtggcaccaactttttaaggaataaaaagcaaatttcaggatttttctacccactagttatttagttgcaccactcaaacatgttcgctatcagttcgaccataatattcagtctgccaaattgatcagcattaactaacctgaaaacgaaaagtttggccaagttctcatatgcacctttattttttttctgaaaattaatcccagctagatcaacctggtacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtttaacatgcatgcatggattaaccgttcgatcgagctaattaattaattattatatgttgtactgtaataatgcaggaggagagctgggcgaggacgttgaagctagcgttccagtgcgtgggaatactgtacggggacatcgggacatcgccgctgttcgtgtactcgagcacgttcaaggacggcgtccgccacccggatgacctgctcggcgccctctccctcatcatctacagcttcgccctcttcaccatcgtcaagtacgtcttcatcgccctccgcgccaacgacgacggcgacggtaacttctttctttctactactacctttctactagtcagccctcagcagcgactctgaattactacgacataccatctccatcggtgtagtacagtatgcgtatcgttaaaataaaaaaaaactacgttttgaagttgttatgttaaagttgcaattttattcattgaatgctatttttatgttatatatgtgtacttaagtttggcttgtataaaaaagaaagagagaaaatagacaagttacaaatacaaataccccatgtgaaaaaaagaatttgttaagacggtaatatctctagtaggaacctagaaagttctatcttgtaagactaggaacctagaaaaagaatgcaggccaagaaaaaaatatctctttttcgatcactttttagaagttctatccatatatgtttcactttcaaaatgtcttgatggtgaaatggtagaaacgcaagactcaaaattttgtgctaaagagcgtgaaggttcatatgatccttgcatccatgaaagtggaaaaaatataacaactcaataagataaataactgtaagactctctccggacttagaaaaatgcatgtcttactaagatggaaaactaatttgtgtctagctatagctgccccttgcaaaaaataaaatgtgtctaggtacctatgtataaatatgtaagtatttttctaatttaaaagtttacatatttttaacataattgatttttttttgtgatctccatcactacataacttgtatcactgtttacatattctcttgctatgttggtacccaaggtagtactagttctaagctagttaatatatgcatgttgcgtccaagcaaagtgtgtcattagcttgtatgcaaccattatagctattaatttgctatgtccggttagcttaaatgccattgccgtgtcgtccatgattgttttttccgattccatgtctcccctctaattttcagctagttaaattaaatgcattaattggacgccactgccgtatcctgcatggttttttttctcctgatccaacttggcatgatcagtgacctactccaacctggtagtctactaaaagtcactctaacctggtagtgtactaaaacatgtgggataaagctaaaagttaaaaggatatttttttagagacggagagaatatatagtcaacacttaaatttagagtatacattaagtttggcaaacttaattgatggatttgatcattctctacattttacaattaatattcatacttctcaagccctgttatttcatctaaaatacaagagattttgcccttataataggagggggtggtagctagctagcagaacattacttatatagcatgttgaaaaatgttattaattactagctgttattaatattaactcccaaaataagtttgaatatgtgtcatctgcaggtggaacgtttgcactgtacacgctgatttctcggcatgcgaaggtgagcttgatcccgaaccagcaggcggaagacgagctcatttccaagtacaacaccgggaagccgcaggcaacgctgaggagagctcggtggatgaaggagcttctcgagaccaacagagccgtcaagatttggctcttccttctcaccatcctagccaccgccatggtcatcagcgatgccgtccttacaccggccatttcaggtgacagctagcttaactaattaattagatagtgtattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatctgaaatggttaatttcatctctgaactttgatctaaatattattgtgaatttactttgtgaaaatgttttcagttctgtctgcggttggtgggctgaaagagaaagcaccgaacctgacaacaggtacaaaggcaaacacaaattacactagcgttgcctagttgatttacaggtcttcgcttcattaaattctttgagttattggtcgtgactatgggtttacacgccaattccttgttgtctcgtagaaaaaaattatacggccataaattagccaacttaaacgtatatgagaagttacgtttcgtgtagtcgtgtagttgtgcctagttgattacgaaggtttaatttctgatacccacaattaaatgtcggtatattgttgatatagacattataagtttacttctattttgaaagaaaattaaatatacatctctaagtacgcagtagaaaatgcgtactataacattttactttgattttctgtagtagattaaaatttggaaaagaacgtgaacatcatatattcatgtcaaaaaatttcaagaatgtagtctttttcacacgctcctattattgatgttgaggtgtcgacttcttggacttcttcactttgaaaaaactgtcattgttagcatttaataggacggccaatgtatgtggccgctgtgtttctcatatctaaatcgttggcttgatttaacgttccgagtattattgttgatgtcaaccaatcaaattcttcacaagattcatggccaggtttaactgatcaccacctactttatacatatgtgtatggacgtacacacctaatagagtagaactgtactagtattagtatggtacacgagactggttcttacaccacatatgcatttctttgtcaattttttggtggcggcgaagctgtacaagtgatgacttttctgaacaggtcatcaccttcaaggtctcttcctctttttctttctcttggaaaaatggtcaccttcaaagcctcccctaaataacacactagttgaggtttacttaggtagaaagcatgacatcaccttaagtactatttgtataattattatagtgaaatgcaattcatttgataatgaccaattatatatgagatctctctgactgttccaacagatgaaatcgtgtggatcacagtggcgactttggtagtcctgtttgcaatccaacggttcggcacagataaaattggctacctgtttgcgccgatcatactcctgtggttgctcctcattgggtgtgttgggatctacaacaccattaagtttgacaccggcgtgttgagggcgttcaacctgaaatacattatcgactacttccgaaggaacaagaaggatggatggatctctcttagtggcatactcctctgcttcacaggtaaaatatgagagttaccaattgcattacctaaaaataattaacatggtaaaatatgaaaaaggaaatatttgataaatttgagacctcctgcaacagaaaattaaatttcaacaagatgtttctgttcgctgaaaagaaacctgttttgccaatatgacaggtacagaagctctgttttcagatctaggatatttcagcattagatcaatacaggtatgtaagttcggataaattgtataaactatttaatggattaatcaaactgcaactaatttgtatctttgtcctccagctaagcttcagctttggtctagtcccttcagtgttgcttgcttacattgggcaagcagcatacttgagagaacatccagagcatatagccaacactttctacagatcaactccaagtatgtgtagaatcatcatcatacttcaatagtgcatacatctgacttcttgaacagaggttaattaattattttccacatgtgaacaattccagacgtgatgttctggcccacgttcatcctggcagttgctgcatccattattggaagccaagccatgatatcctgcgcatttgcaaccatttcgcatttgcagacactcaactgcttccccagagttaagatactccacacatcaaggcaatattcaggacaactgtacattccagaagtgaacttcttgctttgtgtgggtgcttgccttgtaacaattggtttcaagacaaccgtgattattggagaagctcacggtaaggattttttatctcatgtcttaatcctagttaaattcaatgatccaatatcaaatattacacaattcacacatgtgaatatgtcaatgtatgtgactaacattatgttgattctttcatgtagcaatatgtgtggtctttgtgatgatcatcacaaccctcctattgacaatagtgatgctcctagtatggaaggtcagcatctggtacgttgcactattcttcatcgtcttcatgtcatcggagtcgatctacttatcggcggtcctataccaatttgtgcatggcgagtatgtacctgtggccatgtcagttttcctgatgattgtgatgactgtctggcactatgttcatgtcaagagatatgaatttgagcttgagcacactgtgccccgtgacaaggtgaaggagctcttggagcgccgtgacatacagagggttcccggggtagggctcttctacaccgatcttgtgcaaggcatacccccggtgttccctcacctcattgagaagatcccttccatccactctgtgctcatctttgtctctatcaagcacttgccgattccgtcggtcgataggtccgagcgattcatctttcgacatgtcgacaaagaagagtacaaggtgttccaatgcgtggcgcggtacggttatcgagaccccatggaggaggccaaggactttgttgatgcacttactgagaacctccagtactacataagggatgttaacttctacactacaggcggtgatcaacatatattcaggagtaccagctatgccagttccattgctgaaagttttgccagctatgagaaacactctgggcatgcagtctatgcagaggagatgcttacaccagccgaatccttctctgagcatacaaagcaacttagtggcagaagcaagcattttaaacaatttcaggtaacaattaatattcattacaaacttctttttttttaattaggaatctcgacatcctatctatgacaacaaaaaaataattataacaatgttggaacaagttggtttgatttacttttcaagatcatacgattttttggaaatgttagttgtagtaacattagttttaaattgggtaccaggtagagaatatgaacatgcaaaagatggagaaggtacaacaggagcagcaggctatcctcagagagatggagaatggtgttgtgtacatacttggagagagtgacatagtggcaagccctcactcctcgcttcttaacaagatcattgtcaattacatctattctttccttagaaaaaactgtagaaatggcgagaagatgttgtctattcctcgcagccaagtactaaaggttggaatcgcatatgagatataagcatatgggtaattttatcattcttgagaaagtatttagagttaccatatttttcagtgtaaaatttagtactccaggtactaggtacctcgaggtaccaattttaatgtaaatttggtacctctaggtactttctggagaactgtaaaatttctgtaagcacatgtataagacacagatggtagttgatatttctcacataataattttctaatggatgttttaatgttcatgtgaatagaggagaatgattgattgtagttttattaaacgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0574900, RefSeq:Os03g0574900