Os03g0586900

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Revision as of 12:46, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0586900| Description = Putative DNA helicase family protein| Version = NM_001057108.1 GI:115453944 GeneID:4333346| Length = 6621 bp| Defin...")
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Gene Name

Os03g0586900

Description

Putative DNA helicase family protein

Version

NM_001057108.1 GI:115453944 GeneID:4333346

Length

6621 bp

Definition

Oryza sativa Japonica Group Os03g0586900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:22433871..22440491

Sequence Coding Region

22433904..22434020,22434128..22434220,22434336..22434404,22434802..22434891,22434977..22435060
,22435337..22435501,22436244..22436431,22436612..22436684,22437015..22437068
,22437268..22437525,22438140..22438346,22438542..22438645,22439058..22439202
,22439357..22439491,22439859..22440032

Expression

GEO Profiles:Os03g0586900

Genome Context

<gbrowseImage1> name=NC_008396:22433871..22440491 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:22433871..22440491 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggggcggagtggcggcggcggcggcgggagctccgggaagagcgggacggggaggatggtgtcgctgcaggagttcgtctcgtccatggcgcctctcatagacctggagaaggcggcggagatatcggcggagtcggcgacgagctcgaagaccctcgagaggaggggttgcgtcatggccaacctcaagtgcaccgacgcccagacggggctgatggggaagacgctcctggagttccaacccaacaagggcgacgtgcttccacctcacaagtttggaacacacgatgtggttgctctgaagccaaataaggcagatgctggatctgctgctcttgggcaaggtgtagtttatcgcttgaaggattcttccattactgttgcctttgatgacattcctgaagatggattaaatagccctctccgccttgaaaagcttgcaaatgaggtgacataccgcaggatgaaggatgcactagttcaacttagtaagggcattcaaacaggcccttcagcaaaccttattcctgttttgtttggagaaaacccacctatgagttccaaggatgttgcgaagttcagtccatttaacaagaatttggatgagtcacagaaagatgctatctcgaaggccctcaggtcaagggatgttttcttgcttcatggacctcctggcactgggaagacaacaactatcattgagataatattgcaggaggtgaaacgtggatcaaagattcttgcttgtgctgcttctaacatcgccgtggataacattgttgagcgactctcccgatatagaaccaaattggtgaggttaggccatcctgctcgattactaccccaagtgttggacagtgctcttgacgcacaggtattgcgagcagataacagcagcttagcaggagatattcgcaaagaaatgaaggtgcttaatagcaaattgctgaaagctaaggataagaatacaaaaagggacatcaggaaagagctcagaacccttgccaaagaagagagaaaacgacaacagcttgctgttgctgatgtgataaaaaatgcagatgttgtactgtcgactttgactggtgcatcttccaaaaagctagatggtattacatttgatttggtcattattgatgaagctgctcaggcacttgagatggcatgttggatagccttattgaagggtccaagatgtgtgcttgctggagaccatcttcaacttcctccgactatccaaagtgctgaggctgagaagaaggggatgggaaagacactctttgaacgccttactgaagcttatggagatcaaattacatccatgctcactatccagtacagaatgcatgagctcataatgaattggtcatctaaagaactttataataacaagatcaaagctcattctagtgttgctgatcatatgctctatgacattgaagaagtgaaaagatcttcttccacagagccgactatcatactaattgacactactgggtgtgacatggaagaagtaaaagatgaggaggagagcactatgaatgagggtgaggctgcagtatccattgctcatgccaagctgcttgttgagagtggtgtccgtgcatctgatattggaataattacaccttatgctgcacaggtaacctgtctgaagatgatgagaaacaaagatactaaactgaaggacttggagatatcgacagttgatgggttccagggtagggagaaagaagccatcatcatttcaatggtcagatccaactcaaagaaagaggtcggattcttaagtgatcatagacgaatgaatgttgctgtaacacgagccagaaggcagtgctgcctagtgtgcgatgtagagaccgtaagcaacgacaaattcttgaaacgcttggttgagtactttgaggagaacggggagtacttgagtgcatcagaataccagagctga</cdnaseq>

Protein Sequence

<aaseq>MAGRSGGGGGGSSGKSGTGRMVSLQEFVSSMAPLIDLEKAAEIS AESATSSKTLERRGCVMANLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVAL KPNKADAGSAALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKLANEVTYRRMKDA LVQLSKGIQTGPSANLIPVLFGENPPMSSKDVAKFSPFNKNLDESQKDAISKALRSRD VFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLSRYRTKLVRLG HPARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKAKDKNTKRDIRKELR TLAKEERKRQQLAVADVIKNADVVLSTLTGASSKKLDGITFDLVIIDEAAQALEMACW IALLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRM HELIMNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVK DEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDL EISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETV SNDKFLKRLVEYFEENGEYLSASEYQS</aaseq>

Gene Sequence

<dnaseqindica>34..150#258..350#466..534#932..1021#1107..1190#1467..1631#2374..2561#2742..2814#3145..3198#3398..3655#4270..4476#4672..4775#5188..5332#5487..5621#5989..6162#gtggacgagacgagtgagaggaggagagcggccatggcggggcggagtggcggcggcggcggcgggagctccgggaagagcgggacggggaggatggtgtcgctgcaggagttcgtctcgtccatggcgcctctcatagacctggagaaggttccgtactccgatcccccatcgcttttctttcgctgtttggttcggaaggtggaacggatggtagtggtggtgggtggtgacgcgtctgtggtgtggttgcgcaggcggcggagatatcggcggagtcggcgacgagctcgaagaccctcgagaggaggggttgcgtcatggccaacctcaagtgcaccgacgcccaggttgatttgcttccattttgctgcttgcttgcttgcccatcggtgccaatgtgtcatcgaggcgtggtgctaatcttgttctggccttgttggacctgcttggtgcgtagagtagacggggctgatggggaagacgctcctggagttccaacccaacaagggcgacgtgcttccacctcacaaggtgaggttacctttgccctcctgtcgtattgttgttattgctcgctgtgataaaattctggttaggaatttatttgtggtatgtgagagcggtttgtttcagaacaattgtcgcttcaggtattgccgtcgaaactcacacttgcagtatttctgccatttgtttagtaattgtgaacaagtaatgttgttgttaactgatagtttcagtgaaatattagattcgtttgtaaagttcattatgaattgcatcacgtgtattattgattttgttgagattggcaggagttgatacatgaaaagctcatgcatgtttcttaatttaccggacactgattcaaagaaatttgtattttacttcaccattgctaatgcccacttatgtttttcttctctagtttggaacacacgatgtggttgctctgaagccaaataaggcagatgctggatctgctgctcttgggcaaggtgtagtttatcgcttgaaggtacctaactatcatctaagggctgttgactatttaaagtctttgcttctgaattaggagaaatgactgtaatttgaacaaacaggattcttccattactgttgcctttgatgacattcctgaagatggattaaatagccctctccgccttgaaaagcttgcaaatgaggtatattttccatgctgttttcattactatttgcaaatgacattccattactgttttcttctctactatattttccatgctctctcttacaactttctgattagaaattttatagcctccaagtaaccataatagtataattgtatcataattcctctttgctttttttttatctccatgtatgtatttctatatatcttcattattgccccttgtcctccagcattgccttacaattcattggaccctaaattttgcatcttaatgctcttctaggtgacataccgcaggatgaaggatgcactagttcaacttagtaagggcattcaaacaggcccttcagcaaaccttattcctgttttgtttggagaaaacccacctatgagttccaaggatgttgcgaagttcagtccatttaacaagaatttggatgagtcacaggttacaatttgatttatttttttcaactgcttttttttggcttgttgcataattatgtttcagttaagttcttatctaaataaggagaagagaagccataagtacttggggcctggagaaatttatcagaacagtatgatctacaatagaattttccagtgcaatcactttgttctgctgatactatttcaagtatcagtagaatttgtatttttaacttattaagtaccagaggaagatctgaaatttattgaatggcagacactcatgattttaagaaaataaaagaacatatggaactaggcaaataacgctaacaccagcacctgcagtttcagactgtggacattccatcacttttggcattacaacttacaaccaaatgtgtcaacaccgtcatcgattacatataattcttgcacctgctaatactggctttggaagacctcatcctgagtagtagcatatatttgcaatacttctgttaatggtgttgcttttgcttcggtgaactccacagctaattatgctggcactggtgtttggcctccacattttttattttctttgctagaaattgattgtttaataaaaataaaaaaattacaattgatgccttttgtctttaccatgtatatctacttgttatgttcttttttgtatcgccttcaaataccagtttcaatatgtattcaaatgaaataaatttcctttttgtggggcccatatctttgttctgcagaaagatgctatctcgaaggccctcaggtcaagggatgttttcttgcttcatggacctcctggcactgggaagacaacaactatcattgagataatattgcaggaggtgaaacgtggatcaaagattcttgcttgtgctgcttctaacatcgccgtggataacattgttgagcgactctcccgatataggttgctaacaaaattttgaaatacctttttaactcgaactttctattcccccatctatcttggtaatgttgaccatttacctcattcaaccaataataactgagaaaattctccctatcctgtcaaaataaaagatgtgatattggttaatgtgacatgttgttattgacatttttctagaaccaaattggtgaggttaggccatcctgctcgattactaccccaagtgttggacagtgctcttgacgcacaggtatagcttactctgagtgcttccttttctcctctactgaggattattaggataaatattcatgaaggttatgttccataattatttcatcagagttgctttgtctctttcaattttcaactgttatatttattcaaataccttgttaaagtgtacccgcctacgccttatgtgacatctgtaacatctgcatgacattctctttatgcccaagttaaaatgggatagattttcttatgaattacagttccacctgtattatctatgatccattcatgcattcacataacttaactgtacttaatctgcttactatttctaatgaaccaggtattgcgagcagataacagcagcttagcaggagatattcgcaaagaaatgaaggtaatcatttactacataattcttaggttcctattattaaatggcaagaccctgctttacatggcatattattttggcatttcaggaaccatctaattagaagctgtcatgtttagatgatagtaatgaaactgcaatttcaataatgttttccattgtagttaaatgtttcttgatttgttctcttttcatcttttaggtgcttaatagcaaattgctgaaagctaaggataagaatacaaaaagggacatcaggaaagagctcagaacccttgccaaagaagagagaaaacgacaacagcttgctgttgctgatgtgataaaaaatgcagatgttgtactgtcgactttgactggtgcatcttccaaaaagctagatggtattacatttgatttggtcattattgatgaagctgctcaggcacttgagatggcatgttggatagccttattgaaggttaatactaacttatgactagttttttttttcatgttgctgcacgttttgagaatgatgattgctgtaaacagtcatcaaaggttctcgtattatttatgcttttttgagtagcacaataaagatagcatgtactgtttcacaaactcccacctttaactttaagcttaaaatatgtcttaaccaagccagcagttgagcatgatcacacgggttcaattttaaaagtgcatggtataatgagaacgagatgctgcattaggtgtccattttagagcaaaaggaaggattatgagagaagttgggaaaactaaatgatttccttggaagatagctaaacttaatttcaataggtggttacacgtacttgaattcattctatcaatcttgtatggatgtatgtaaactctaacaagttctcatgacccctgtggggctccttcacactccacaagttggcttctctgattatgccagtgaacaatttcatcacctatttgattgcttgtgtttgtcatgattcagcatgcacagcgcgtaggttaaatggtcatcatactgtacttattgagatctgtcatagggctcctcagttcttttgtttttgtatgcagggtccaagatgtgtgcttgctggagaccatcttcaacttcctccgactatccaaagtgctgaggctgagaagaaggggatgggaaagacactctttgaacgccttactgaagcttatggagatcaaattacatccatgctcactatccagtacagaatgcatgagctcataatgaattggtcatctaaagaactttataataacaaggtgcacttcccattggtgtttttacactagccacctattagtaacttgttttcactagccacctattagtaacttgttttcagcctctctctttagtccataactttcctcatgttgttatttctttgtttcttgtacttagatcaaagctcataacttttctcatgttgttatttctttgtttcttgtacttagatcaaagctcattctagtgttgctgatcatatgctctatgacattgaagaagtgaaaagatcttcttccacagagccgactatcatactaattgacactactgggttagtattctccaatgcttggcctattcaatgtgttcattcttttagtcatttatgggttgaacttgaaccttggcaattttgcttccctcgttgctttctttccctcactcaatagtgttggcttcctctataaaagagtgtcggcttcctctatatttccctcactcaatagtgttggcttcctctataaaagagtgttggcttcctctataaaagataggactaccgaattcacttcaaagggttatctcatacttgaagacaataattgggcagaagtaatacttcaaatttgtagccatcatttgactgatgaataaaagatatctgtttttttaaaagaaatgatgtgatgaccaacatcaatgtttgttagatacacttctaacagtctcaagtaatcatttaggtgtgacatggaagaagtaaaagatgaggaggagagcactatgaatgagggtgaggctgcagtatccattgctcatgccaagctgcttgttgagagtggtgtccgtgcatctgatattggaataattacaccttatgctgcacaggtttgctcctatatgctctgaatattatcaaatcaatatacagtgatgagcttaataaaacaaaacaaaataaacgtttataggacttatgggttggctccttcatgatgttgaagtttataggactgactcattgaatggtgtaatcccgtaggtaacctgtctgaagatgatgagaaacaaagatactaaactgaaggacttggagatatcgacagttgatgggttccagggtagggagaaagaagccatcatcatttcaatggtcagatccaactcaaagaaagaggtaagctcccttccatgatcctccttggtgagtggatatcctatgtaaaatattcagctttacaaacatgaatattatacatggatgaggatttgattgctgctgcacagttgatccatcaaattagcatctggggagacttcaacttattttagaaaaatgtttaatagaatagagcgaatcagtatcgatatgatgtgaacgatctgtagatatatgtgcatgccatgcaaaatatctcattattgacataaggacgaaatatcatttttaaaataaaaggactgtctgattgaactactgaaataagaattcacaattatattacctggatactaaggaaaccttatctatttgcaaatttcaggtcggattcttaagtgatcatagacgaatgaatgttgctgtaacacgagccagaaggcagtgctgcctagtgtgcgatgtagagaccgtaagcaacgacaaattcttgaaacgcttggttgagtactttgaggagaacggggagtacttgagtgcatcagaataccagagctgatgacttggggtgttaacccttaaccgtgatagcccgtgcttatcgcaaagatagtgaagagatatatccaaacgatgcttgtgataggaacatcgtgcacttcaaactggtgcaatatggccaatggagatactgtcattcgacttttatagattggaaacagatcgctgtgagactgaacagataattagctcaggagtggatcaatttcgtcttgactggccctgttctggtctcttcttctgtggcttatggaaatgaaacctcagttatgtgtttttatatgtccgttctttcagctgatgtacaatgatagaagactaattttattcatccatgtgcaaatctaccatagttttttgcatggagttttgaaacttgggtccacaaaaatagtaataataggataggaggttgactgtactgaacttcgcatgataattaatctgtatctcatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0586900, RefSeq:Os03g0586900