Os03g0589300

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Revision as of 12:47, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0589300| Description = Ovarian tumour, otubain domain containing protein| Version = NM_001057115.1 GI:115453958 GeneID:4333353| Length = 63...")
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Gene Name

Os03g0589300

Description

Ovarian tumour, otubain domain containing protein

Version

NM_001057115.1 GI:115453958 GeneID:4333353

Length

6323 bp

Definition

Oryza sativa Japonica Group Os03g0589300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:22545000..22551322

Sequence Coding Region

22545213..22545220,22545317..22545373,22545523..22545607,22545914..22545962,22546050..22546123
,22546207..22546281,22546369..22546423,22546597..22546670,22546951..22547063
,22547160..22547417,22548164..22548261,22548388..22548505,22549003..22549097
,22549250..22549408,22549585..22549694

Expression

GEO Profiles:Os03g0589300

Genome Context

<gbrowseImage1> name=NC_008396:22545000..22551322 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:22545000..22551322 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaggcaggacggcgacgctgagggatcgggacggggagagcataggagcagaggctgccgttccccggcagagaccaagactgaccgaagccccggcattcccagagttctggaggtggggttcgccaccgtgcgagaacaccacgggaccaagagcaccacgggaccccaaaagagcaacaacctccagaacaagaagataaaatcaagagaagatggcagagaaccggaggccgcagagttgagacggggcgagaggagaagagaccacgaggtggtatttgccgctgctgcgcgagatccacctacactgcagcgccccgacttcgactgcgtgcgtcagaacaaacatcccaatgccaatactgagaatgagatgacgggcggtgatctcgagaaagcaagtggaagcttactagaccagagcaagcaaccgctgaacataaagagggatcgtcgcaggctagaagaagtcagtgataaaatgtggaaggatgaagcgaaggagattggaagcaggtcgccagcactaacaaaggggagcacgaaagagtctcagatgcttcagtctctcgatggcaaagcaaaaaacgctcagaaaagaaggaaagatgctaagcaagaactccgcagcaagattccaggagtgacactggtttctgatgactcactgtttgggcaagcagctaattacatcgaagaccttgaagggacatcacttgacttagaaggcttatctggaactgccatgatcagaaaagttcttcctggttcaaataaaatacgaggtgttaccgcgctttttgaggcagcgagcagacatataacagaagttaaaaagaaaaagaaaattgcccctgaagaagttgaaaaggaatttcgtcctggagttgatgcccatgatggccgagctgggaaaaaattgaccaacatgattcccattcctcatattccaaaaataaatggcgatattccttctgccattgaagcctttgcagatcaccaaagactgcttgacaggttggtgctgtatgatctggctgaagtcaaggttaaaggagacaggaattgccagttccgagcattgtcagatcaaatgtaccacaccaccgaacaccacaggtttgttcgtcagcaagtagtgaaacagcttgagtcttatcctgaaatttatgcgggttatgtccctatggattatagggaatatctgaagaagatgacagaggatggagagtggggtgaccatgttacgcttcaggctgctgccgacttgtatggtgtaaagataaccctgctgacatcatgcagagataccttttacattgaagttcttcctgctgaccagaaaccaaaaggagagatatgcattagtttttgggctgaggtgcactacgattcggtatatgcagaaaaagccagttga</cdnaseq>

Protein Sequence

<aaseq>MERQDGDAEGSGRGEHRSRGCRSPAETKTDRSPGIPRVLEVGFA TVREHHGTKSTTGPQKSNNLQNKKIKSREDGREPEAAELRRGERRRDHEVVFAAAARD PPTLQRPDFDCVRQNKHPNANTENEMTGGDLEKASGSLLDQSKQPLNIKRDRRRLEEV SDKMWKDEAKEIGSRSPALTKGSTKESQMLQSLDGKAKNAQKRRKDAKQELRSKIPGV TLVSDDSLFGQAANYIEDLEGTSLDLEGLSGTAMIRKVLPGSNKIRGVTALFEAASRH ITEVKKKKKIAPEEVEKEFRPGVDAHDGRAGKKLTNMIPIPHIPKINGDIPSAIEAFA DHQRLLDRLVLYDLAEVKVKGDRNCQFRALSDQMYHTTEHHRFVRQQVVKQLESYPEI YAGYVPMDYREYLKKMTEDGEWGDHVTLQAAADLYGVKITLLTSCRDTFYIEVLPADQ KPKGEICISFWAEVHYDSVYAEKAS</aaseq>

Gene Sequence

<dnaseqindica>6103..6110#5950..6006#5716..5800#5361..5409#5200..5273#5042..5116#4900..4954#4653..4726#4260..4372#3906..4163#3062..3159#2818..2935#2226..2320#1915..2073#1629..1738#gtctcgtcttcttccgagcggcgaggcgagggcggcgttggcgacgggcggtggtcgtctgggcttggaggagaggccaccgtggcggcagcgagcggtggccggaggagcagcgctcgggcggggacgaatcgacccggcgtggcgggcgtcgttcgggagcgtggaggcggcggggcttcggcaacgtcccgaggttgccggcagcgaggtggatcggggcgtacggtggggaggaagagggaagcggtggtggtcggtggaggccggcatgttgggcggcgcggctaggcgagggggagaggaggctagtggctagctcgctcagtgcgactctgaccgcggcacgcggcacgcgggcttttacagccgccatgaccgcgaggagggcgaggacggcgtgggacgggagcaggtggctgtagcggcgtgcgaccgcatgcactggcggcggcgggaggcaacggggcgaggagtaggggcatgggctcgatgcgacgcggcgaggccgtcttggtccgcgggtatggcgtggacttctggcgacgaggcgttgcggtgacggcggctacagtggcgcgccggctttgaggagaggcgcggtggctcgctgctcggaccgcagcggtgcggcattttgtcgagcaggtggcgtgcgagggcggctgtctcggggcaaggccgtgggctggctgagagatgtggcttaggttgaataatatgccttaggattgagaattggagggaattcattaggtgttaagtttggattttgattttgaatggtttctaattttagaggggagtgtgaggatgtatgaattgagatcctaactgaaatttatcttgggagaacctcttgttgattaaaaaacagacaatatttgtcttttgcaggcagtttcataagatggttttactccagaaaagaagttctctaagctgccatcaggaggattaagggagctcattggtgcatacttaacacttctccagaatttctttttgaagttgtgcataagtattgttagtgagatggttcacttttgtaggtcaagatggcataggcaggagcaacatcatggaagcagaaggtattttgaaagatctgattgatgataaggtgaacaatgttgatgccgagttgcatgtcttacaagaagagcatgaaaaagacctgctcgagcatgacagtaagttaagttttatctctattccttccccacccacacacatgttgcactattttacttatccttaagtaaaaaaacactgtgttacatagtattattatacgcaaataaggatgatcatcttgcatttcacaaacataagctgattatcaaccctcaaataataatcctctctgttcttttcttgaaaggaacggcccaaaagaagaggaggcccaggaaatgggaagcccaaagcccagatcagattggcaaacagcaataaagcggggcgaataccccagtttccctctctcccccgccgagccttcgtcgtcagctggtgttaccccagcttgaattctctgcaagacagcaagttcttccctactccctctccaccctgcgcaattccctcgcattctcatcctactccaagagcagaggaggaaggagatggagaggcaggacggcgacgctgagggatcgggacggggagagcataggagcagaggctgccgttccccggcagagaccaagactgaccgaagccccggcattcccaggtcaggaggaccagcgaatccattctcttctcgttcgtcttcgcgttcttgcatttcttttcgaccgtttcaatcgcagttccaccgccattcttccttgctgtctttcttggtcggtgttcttgaagttctcgtttggtttgctgcaagaagcatatctgatcgattgattgcagagttctggaggtggggttcgccaccgtgcgagaacaccacgggaccaagagcaccacgggaccccaaaagagcaacaacctccagaacaagaagataaaatcaagagaagatggcagagaaccggaggccgcagagttgagacggggcgagaggagaaggtcaggacctgcgaatctttctttcccttcttgttctttgtttcttgctgcgttcttgctttgttttcgatcgtctcaatccctgcagctttcttgcgttggttttcttgccaagttgtgtttggcttcacacgtgtctgatcgatgtgcagagaccacgaggtggtatttgccgctgctgcgcgagatccacctacactgcagcgccccgacttcgactgcgtgcgtcagaacaaacatcccaatggtaatcagtctctctcctgtcctgctctgtgtccggtttaattcttttcctttactctgggaacgaacatgcatgtataaaagcctatgtactagttgttgatccatgtccatgaatctggattgaaatgttaacagatattggcaatatctgtaaattcttgttggaaccatgcggaaacttaatctagttaagttcactgatgctttgacaccttggtttctgaaactggatccttgtttcttgcactcctgcctttatttcaaaagagaaaaaaagtaacttcagaatttccaacaagaaactgatcttttttttttcttcctgcaaaatgcaaatgcaagttcactgattcatagagagttgtttaagttactccaatctgattttctttcactacaagaactagtcctggtgttcagttttgacaaacttctatgatataaaaactccctgatatgagaagctgacatgtgtatgtgtggccatgcacccagccaatactgagaatgagatgacgggcggtgatctcgagaaagcaagtggaagcttactagaccagagcaagcaaccgctgaacataaagagggatcgtcgcaggctagaagaagtcaggttagtgacttctctgctcccttcttatgcgcaaatatgtattgttggttgctctgtttgatctgataataactgttagaattgagattatgttgttggtgaatctgacaaattgttgaaccctagtgataaaatgtggaaggatgaagcgaaggagattggaagcaggtcgccagcactaacaaaggggagcacgaaagagtctcagatgcttcagtctctcggtaaatatatttgaatttgggcttgctcttttgaactgtggagtggagttgattgggcctgtttttacttttggtgtgtgtggatgcactatcaggtgcacaaactgctaagagctccagtggttgtcagggaaaaaaatgctagtgtccaactcaatggcttcagggcagccacggcatcttttttcttacaccctatacacccagtgtagtttgatatctatatcaggtcatgtccagagtaacgagtggatatttcaattaatcaggatggaaattccaactaggttaattgcttgctcttggtttcacaacttgtaaattctcgtctcatgcatggaaaccgtacagaaacctctaatctagttaagcatgtcaattcatactgtaacaacatgcatgatttctgacaagaaacagaattcattgtttatgttttgctgttacttgacaaaacaacaagctgatcctccctaatttcttgtaaaatggtatcttgttgttttgtatcatgttaagtaataattatgtaactacaaaaggattattggaaagtgattattttgccaatttggaaagggaacgttcacactctcagtgtgcaattttgtagatgaaattgactcaacatcagtacctgaaaattgactttgaaactgtggtaacccttggaacacttcaattttacctccaaaatgtgtccgcaccccacttaacatgccttttccaaacatttcttcttgtagatggcaaagcaaaaaacgctcagaaaagaaggaaagatgctaagcaagaactccgcagcaagattccaggagtgacactggtttctgatgactcactgtttgggcaagcagctaattacatcgaagaccttgaagggacatcacttgacttagaaggcttatctggaactgccatgatcagaaaagttcttcctggttcaaataaaatacgaggtgttaccgcgctttttgaggcagcgagcagacatataacagaaggtaagtaggtagaatacattcggatatgattcaagagcaaatttctgctgacttctttaacctttaattttccttgtatccactacgcatttgcagttaaaaagaaaaagaaaattgcccctgaagaagttgaaaaggaatttcgtcctggagttgatgcccatgatggccgagctgggaaaaaattgaccaacatgattcccattcctgtaagtatttattccccaccgacgattgagcatatgtgctcagattgagattcttcttgatgctagttatcagacagctctcaatgtcctacttatacatggaaattatttgcaagcattggtatattttttacttagttcagttgtcagtctgctttggttggaaaacctgtatctccaattctcctcaccatcaccaaggaacttgttgtgttcctaggcgttttgttatctttcatgttatatctcaaaagtaacttatgtccctctgttattgtagcatattccaaaaataaatggcgatattccttctgccattgaagcctttgcagatcaccaaagactgcttgacaggtaaatagccctgtagtatatttttaactgtatttccaaatctacgaccgatagaatgtgaacctcatggcagcttttgtatgttcagtgttagtaatgtgagtcaccataggtgtttcacttaatgttgcttctaaaatttgactcatggcacgatgtgatttcttatttaggttggtgctgtatgatctggctgaagtcaaggttaaaggagacaggaattgccaggtatacttaaaatatctagccatttcccttttccttaattttactacatgttgtacttatctcttttagcatgtgtcttttactcagttccgagcattgtcagatcaaatgtaccacaccaccgaacaccacaggtttgttcgtcagcaagtagtgaaacaggttagtgttggtgcagtcatcatgttttcttgttagaactctacttgtccatgctcatgtttcccttttgaactgttccacagcttgagtcttatcctgaaatttatgcgggttatgtccctatggattatagggaatatctgaagaagatgacagagtaagtaattgctctttttgtaacaagaaaatctttgttatagtgtaacattatgcatttaaaatttgttgccacaaaatcgaccagggatggagagtggggtgaccatgttacgcttcaggctgctgccgacttggtaaacaagatgtttcctcacttcctgagttgttaaataaaaattgctgtcttgtacattggccatattatgaagtatacagatcaatagttctttgtattggacagtatggttgtagattcattaattgacaaataatcaaaagaaataatgctattttctgtggtttttattttggtaaccagcatgtctcaacagctatattgcaatcttgtgcatcttaggattatgtgaatgatctagggatgttgtatgtcgatccttgttataaatgtgaaactcaagtatccgcattggtttttgcagtatggtgtaaagataaccctgctgacatcatgcagagataccttttacattgaagttcttcctgctgaccagaaaccaaaaggaggtagcctttttttttggcaattgaatttttactgcaattaatatactaactgcactgttcttagttgatttgcctagtaggtcatacttacttgagtagatgtgtatctgatgtatttctgtttatttttgttttctcccaaaacccagagatatgcattagtttttgggctgaggtgcactacgattcggtatatgcagaaaaaggtacagtttgtcgttttgatacagtgttcttctaggagtactagtatctctttggcaggttgatgctgtagctcatgtgtgcaagttgtggtgcagccagttgatccagttccgttacaacctagtcgtcggcgaggaactgcgacgcccggcgagcaggaagaacttttattctagagaattgagagaaaagcagaaggggagagagagagagagagagagagagagagattgttttcttacattttcaacttgtatatatacgctacagcagctggagatttatatagtcagcactcgtttgccctctgggcccc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0589300, RefSeq:Os03g0589300