Os03g0616400

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Revision as of 12:48, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0616400| Description = Similar to Plasma membrane Ca2+-ATPase| Version = NM_001057196.1 GI:115454120 GeneID:4333451| Length = 5455 bp| Def...")
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Gene Name

Os03g0616400

Description

Similar to Plasma membrane Ca2+-ATPase

Version

NM_001057196.1 GI:115454120 GeneID:4333451

Length

5455 bp

Definition

Oryza sativa Japonica Group Os03g0616400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:24102030..24107484

Sequence Coding Region

24102039..24102230,24102987..24103041,24103178..24105126,24105217..24105375,24106144..24106315
,24106388..24106686,24106876..24107151

Expression

GEO Profiles:Os03g0616400

Genome Context

<gbrowseImage1> name=NC_008396:24102030..24107484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:24102030..24107484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcacagcggcgtcaatggctgctgcccgcttcggctccccgccgccgccgctgtccacggccgccggatcccgccgctgctgcccccacggggggcgtggccgggttgtatcgccgcgccggcgctgcacaggaagcccggccgcggcggcggcggcgcgctctccagctgcaggcgagcatcgcatcatgagaagttacaggttgctgcactgccatccaaagctacactcgagtttgaacatggtgtctcacttcgaagtgcatatattgttcctgaagatgttcaagctgcagggttccagattgatgctgatgaactagcatctattgttgaaagtcgcgacactaaaaagttgactgtgcatggccaattaaatgggatcgcagacaaattaggaacatcattaaccaatggtatagttacagacaaggacctcttgaatcaaaggcaggacatatatggagtaaataagtttgctgagaccgagattcgcagcttttgggagtttgtatgggaagcactggaagacacaacccttataattcttagtgcgtgtgctattttctctttggttgttggcataaccacagaaggatggccacaaggagcccatgatggcgttggcattgttgcaagtatcctccttgttgtttctgttaccggaacaagtaactatcagcagtccttgcaattcagggaccttgacaaggagaaaaggaaaattcttgttcaagtcacaaggaatggcttgagacaaagagtactgatagatgaccttcttcctggtgatgctgtccatcttgctgttggagatcaggttcctgcagatggcctatttatttctgggttttctgtgttggtcgatgagtctagtctaactggggagagtgaacctgtttttgtaaacgaagataacccttatcttttatcagggacgaaagtgcttgatgggtcctgcaaaatgctggttacagcagttgggatgagaacacaatggggcaaattaatggctgttcttactgatggtggggatgatgaaactccacttcaaaccagacttaatggagttgcgaatactattgggaaaattggtctattttttgctgtattgactttcattgtcctctcacaagggataattggccagaaataccttgacgggcttcttttgagttggtccggagatgatgtgctagagatattggatcattttgctgttgcagttacaattgttgttgttgctgtacctgagggattgccattggcagtcactttgagccttgcatttgcaatgaagaaaatgatgaatgacaaggcacttgttcgacagttggctgcctgtgaaaccatgggctctgccacagtcatttgcagtgacaagacaggaacactgacaacaaaccgcatgactgttgtaaaagcctgcatctgtgggaataccatacaagttaacaatccacagactccaaacatgtcttccaatttcccagaagttgctgtagaaactcttctggagtccatatttaacaacaccagtggcgaagtggtgactaaccaagatgggaagtatcaaatactaggcacccctactgagacagctttgttggagtttgcactgttgctagacggagattgcaaagaaaagcaactgggaagtaagattgttaaagtggaaccttttaattcaaccaaaaagaggatgagtaccattcttgagcttcctggtggaggatatcgtgcacattgtaaaggtgcttcagaaatagtattggctgcatgtgataagtttattgatgaaagaggttgtattgtcccccttgatgataaaacttccagtaagctcaatgatataatcaaagccttttctagtgaagcgctcagaacactttgccttgcttatagggaaatggaagaagggttttctactcaagagcaaataccgttacaaggatacacttgcatcggcattgttggtattaaagatcctgttcgtccaggtgtcaggcagtctgtggcaacttgccggtcagctggcatttcagtgagaatgattacaggagacaatattgatacagcaaaagcaattgctcgggaatgtggcatacttaccaaggatggcattgcaattgagggtgctgagtttagagagaaaagtgctgaagaactccatgatttgattccaaaaatgcaggtactagcccgttcttccccacttgataagcatacacttgtgaagcacttgcgcaccgcattcaatgaagttgttgctgtgactggtgatggcactaatgatgcacctgcgctgcgtgaggcagatattggacttgccatgggcattgcagggactgaggtggcaaaagagagtgctgatgttgtaattctggatgacaacttctccacgattgttactgttgccaaatggggacgctctgtttatgtgaacatccaaaaatttgtgcagttccagcttactgttaatgttgttgcattactagttaacttcacttctgcatgtttcacaggggatgctccacttacagctgtacaacttctttgggtcaacatgatcatggataccctaggggcgcttgcactagccaccgaaccacctaacaataacttgatgaagaaagcaccggtaggaaggaaagggaagttcatcacaaatgtgatgtggaggaacattgtggggcagtcgttataccaattcgctgtcatgtggtatctacaaactcaagggaaacacttgtttgggctggaaggctaccatgctgatattgtactaaatacaatcatattcaacacttttgtcttctgccaggtgttcaatgaaataagctcaagagagatggaggacatcaacgttctgaggggcatggcagggaactccattttccttggtgtcctcaccggcaccatcttcttccagttcatcctagtccagttcctgggcgatttcgctaacaccacacctctgacccagcaacagtggctcatcagcatactcttcggcttccttgggatgcccattgctgctgccatcaagttgattgctgtagaacctcatgaaaaagccgatacacgtagaacgccgtaa</cdnaseq>

Protein Sequence

<aaseq>MHSGVNGCCPLRLPAAAAVHGRRIPPLLPPRGAWPGCIAAPALH RKPGRGGGGALSSCRRASHHEKLQVAALPSKATLEFEHGVSLRSAYIVPEDVQAAGFQ IDADELASIVESRDTKKLTVHGQLNGIADKLGTSLTNGIVTDKDLLNQRQDIYGVNKF AETEIRSFWEFVWEALEDTTLIILSACAIFSLVVGITTEGWPQGAHDGVGIVASILLV VSVTGTSNYQQSLQFRDLDKEKRKILVQVTRNGLRQRVLIDDLLPGDAVHLAVGDQVP ADGLFISGFSVLVDESSLTGESEPVFVNEDNPYLLSGTKVLDGSCKMLVTAVGMRTQW GKLMAVLTDGGDDETPLQTRLNGVANTIGKIGLFFAVLTFIVLSQGIIGQKYLDGLLL SWSGDDVLEILDHFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRQLAACE TMGSATVICSDKTGTLTTNRMTVVKACICGNTIQVNNPQTPNMSSNFPEVAVETLLES IFNNTSGEVVTNQDGKYQILGTPTETALLEFALLLDGDCKEKQLGSKIVKVEPFNSTK KRMSTILELPGGGYRAHCKGASEIVLAACDKFIDERGCIVPLDDKTSSKLNDIIKAFS SEALRTLCLAYREMEEGFSTQEQIPLQGYTCIGIVGIKDPVRPGVRQSVATCRSAGIS VRMITGDNIDTAKAIARECGILTKDGIAIEGAEFREKSAEELHDLIPKMQVLARSSPL DKHTLVKHLRTAFNEVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKESADVVILDD NFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALLVNFTSACFTGDAPLTAVQLLWVN MIMDTLGALALATEPPNNNLMKKAPVGRKGKFITNVMWRNIVGQSLYQFAVMWYLQTQ GKHLFGLEGYHADIVLNTIIFNTFVFCQVFNEISSREMEDINVLRGMAGNSIFLGVLT GTIFFQFILVQFLGDFANTTPLTQQQWLISILFGFLGMPIAAAIKLIAVEPHEKADTR RTP</aaseq>

Gene Sequence

<dnaseqindica>10..201#958..1012#1149..3097#3188..3346#4115..4286#4359..4657#4847..5122#acggtagcaatgcacagcggcgtcaatggctgctgcccgcttcggctccccgccgccgccgctgtccacggccgccggatcccgccgctgctgcccccacggggggcgtggccgggttgtatcgccgcgccggcgctgcacaggaagcccggccgcggcggcggcggcgcgctctccagctgcaggcgagcatcgcatcatgtccgtctcttccccctcactcgcagttctgttattaatttagtagtttctgctagaacttgctactgcgatccactgatcctctcctgctgctcgatttttttttttttttgtattctcgtttttaccttttttttttttttgggcactgggttctgaattctgttaatatgcgcacggattgctgcgttagaatcatagtgtgtgtgtgcgcgcgcgcgcgaataatccatatcgccgggtttctcaattgacatccttagctggctaaaaatcgccgggtttctcaattgacatccttagctggctaaaaatcatggacataggataatgcaatgataagtactaatttctgtcgtggcaattggtctgtaataacggcttttcgacaagtatttagcaactaaaattcaaccttgaattttattttcctgttagaactgtaaaattaaatcacacgtggtagtttgcttggatgtaaaatcaagtatatttatgatacatcgcatccttttttctgtaactactgtaacgttctatgagctagaaaatattgcttaacctcctgtcattgataactctgaacatgctataattaacattgtctaatttttaatgccattataaatccttttcaaaccttcatattctcaaacttgcattagtagtgttagtgcactaaaatgctaggttcttttgcttgtattcctctaagtgggtttgaactttgaaatttaagcatcaagtgtgtggcaggagaagttacaggttgctgcactgccatccaaagctacactcgagtttgaacatggtaattttgtaattattcaactgtttcatcttatatattgcagtggagtccaagtcatgcccatattttctgatttgaatgcagccttgaaagattctagtatctaagtatgttgccaaaaaatacatatactcaggtgtctcacttcgaagtgcatatattgttcctgaagatgttcaagctgcagggttccagattgatgctgatgaactagcatctattgttgaaagtcgcgacactaaaaagttgactgtgcatggccaattaaatgggatcgcagacaaattaggaacatcattaaccaatggtatagttacagacaaggacctcttgaatcaaaggcaggacatatatggagtaaataagtttgctgagaccgagattcgcagcttttgggagtttgtatgggaagcactggaagacacaacccttataattcttagtgcgtgtgctattttctctttggttgttggcataaccacagaaggatggccacaaggagcccatgatggcgttggcattgttgcaagtatcctccttgttgtttctgttaccggaacaagtaactatcagcagtccttgcaattcagggaccttgacaaggagaaaaggaaaattcttgttcaagtcacaaggaatggcttgagacaaagagtactgatagatgaccttcttcctggtgatgctgtccatcttgctgttggagatcaggttcctgcagatggcctatttatttctgggttttctgtgttggtcgatgagtctagtctaactggggagagtgaacctgtttttgtaaacgaagataacccttatcttttatcagggacgaaagtgcttgatgggtcctgcaaaatgctggttacagcagttgggatgagaacacaatggggcaaattaatggctgttcttactgatggtggggatgatgaaactccacttcaaaccagacttaatggagttgcgaatactattgggaaaattggtctattttttgctgtattgactttcattgtcctctcacaagggataattggccagaaataccttgacgggcttcttttgagttggtccggagatgatgtgctagagatattggatcattttgctgttgcagttacaattgttgttgttgctgtacctgagggattgccattggcagtcactttgagccttgcatttgcaatgaagaaaatgatgaatgacaaggcacttgttcgacagttggctgcctgtgaaaccatgggctctgccacagtcatttgcagtgacaagacaggaacactgacaacaaaccgcatgactgttgtaaaagcctgcatctgtgggaataccatacaagttaacaatccacagactccaaacatgtcttccaatttcccagaagttgctgtagaaactcttctggagtccatatttaacaacaccagtggcgaagtggtgactaaccaagatgggaagtatcaaatactaggcacccctactgagacagctttgttggagtttgcactgttgctagacggagattgcaaagaaaagcaactgggaagtaagattgttaaagtggaaccttttaattcaaccaaaaagaggatgagtaccattcttgagcttcctggtggaggatatcgtgcacattgtaaaggtgcttcagaaatagtattggctgcatgtgataagtttattgatgaaagaggttgtattgtcccccttgatgataaaacttccagtaagctcaatgatataatcaaagccttttctagtgaagcgctcagaacactttgccttgcttatagggaaatggaagaagggttttctactcaagagcaaataccgttacaaggatacacttgcatcggcattgttggtattaaagatcctgttcgtccaggtgtcaggcagtctgtggcaacttgccggtcagctggcatttcagtgagaatgattacaggagacaatattgatacagcaaaagcaattgctcgggaatgtggcatacttaccaaggatggcattgcaattgagggtgctgagtttagagagaaaagtgctgaagaactccatgatttgattccaaaaatgcaggttttttatacacctaataattttaaattttggttctgtaagtgtttatccatctggggagctctcatgtgataattctggtaactgaaggtactagcccgttcttccccacttgataagcatacacttgtgaagcacttgcgcaccgcattcaatgaagttgttgctgtgactggtgatggcactaatgatgcacctgcgctgcgtgaggcagatattggacttgccatgggcattgcagggactgaggtaataaactagtaacaccactgagtcatgagtacaagcacttaaaatctcttcatctgcaaatgtttatgtaaaaacttcactggttaactcaactggacctgaattggacatcgcatctagatatccttattaactgtattaactaaattgtgaaggatacctatgtagttaaatttctataagaaatatgctgtgagcctttcttttgtatattatcagtattctagttttctatttccaatgctatttaccatatcactggtccattggcttgtatttacttgtaatgctccatttgctgtaaaacccctttgatggcacaaaagtatatctgtaaattctattgtcgaagtcctctgaggttctcagaggatgtagctcctacattctgatgatgcacagctcatcgatatataaaatagagacaatccattatctctataaaataatagaagtcgttgccaacatgagatagctatgaaaagttgctggatgatggaagtagtgtggaactgtacctataaggctgtaataggcaatcttgatttaacttgctacatgttggtttactgctttttgtttggcaaataacatttctttttggaatttggaaatgaaatgaaaataataatctggttcgtggtttgtgcttttccattctgatcataaattcaatatcctctataatgttaatttgaccaagcgcgccagtttgtggtacaaactacaaacatccctgaggcttgtataaattgttttatgcaggtggcaaaagagagtgctgatgttgtaattctggatgacaacttctccacgattgttactgttgccaaatggggacgctctgtttatgtgaacatccaaaaatttgtgcagttccagcttactgttaatgttgttgcattactagttaacttcacttctgcatgtttcacaggtaaatcctctttataattctattaacttaatcagatctctatctcatcatttacatttctcttcatgccaggggatgctccacttacagctgtacaacttctttgggtcaacatgatcatggataccctaggggcgcttgcactagccaccgaaccacctaacaataacttgatgaagaaagcaccggtaggaaggaaagggaagttcatcacaaatgtgatgtggaggaacattgtggggcagtcgttataccaattcgctgtcatgtggtatctacaaactcaagggaaacacttgtttgggctggaaggctaccatgctgatattgtactaaatacaatcatattcaacacttttgtcttctgccaggtatgttagcacttgcaaaataccattcttttgtactggtaaatttaggagcaaaaattatctctttaatatggaagagatatatcagacaagaggatctgtgtgtgtttgtgtgtgtgtgtaactttatccttgcattgccatatctttttaatatgttccagttttcattaattgcatgctttgtaggtgttcaatgaaataagctcaagagagatggaggacatcaacgttctgaggggcatggcagggaactccattttccttggtgtcctcaccggcaccatcttcttccagttcatcctagtccagttcctgggcgatttcgctaacaccacacctctgacccagcaacagtggctcatcagcatactcttcggcttccttgggatgcccattgctgctgccatcaagttgattgctgtagaacctcatgaaaaagccgatacacgtagaacgccgtaaaccacacacaccaggataagacattcaatcaattttgtgcaccaataatccaagtatacctccactctatgatcaaagattggcagcattttgcgaagaaaatttgatgcaatggagttcctgttgggtttggccaatctaaccagccacgaaactgatgagataagagagccaattagtggttctgggaatatgtagaagtgattttttttgaggtattattttgtacacgctgatctagtattatgaaaatgtaaagccaactggcatagttgcgtagagtgtaaacagatgagattgtacataaatacaagactgacatttgatgatagc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0616400, RefSeq:Os03g0616400