Os03g0625900

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Revision as of 12:49, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0625900| Description = WD40-like domain containing protein| Version = NM_001057233.1 GI:115454194 GeneID:4333495| Length = 6572 bp| Defini...")
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Gene Name

Os03g0625900

Description

WD40-like domain containing protein

Version

NM_001057233.1 GI:115454194 GeneID:4333495

Length

6572 bp

Definition

Oryza sativa Japonica Group Os03g0625900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:24577838..24584409

Sequence Coding Region

24578295..24578390,24579019..24579084,24579682..24579854,24580084..24580294,24580686..24580910
,24581787..24582123,24583830..24584257

Expression

GEO Profiles:Os03g0625900

Genome Context

<gbrowseImage1> name=NC_008396:24577838..24584409 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:24577838..24584409 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcctcgtccgcggaagcgggtctcgcggcccaagccacgcgccacctcccgcggccgcggcggcggggatgaggaccccttcttcgagtccgagcccaagcggcgccgcgggggcggccgcgacgaggacatcgagagcgaggacagcgacctggagggcgtggcagcggctgctgctggtggcgtcggcgacgatggggaggaggaggaggaggaggaggaggagcaggagacggcgggggagaagaagatgcggatcgcgaaggagcttctcaagaaggtgacggacgcggcgaggaggaggagggaggatgacgaggacgaggacgagggcgaggaagccggccggaggcgggtcgccgatatcctcctcaagaggcaattcgaggagagtggcaggaagcggatggagctcgccgacaggatattacaaccagatcctgaggatggctttaagatgctcgtgaagcaccgacaaccagttactgctgttgttttatccaaggacagtgataagggattttcagcatcaaaggatggagtcattgtgcattgggatgttgaaactggaaaaagtgagaagtatttatggccaagtgaaaatgtcttggtttctcatcatgctaagccacctctatcagctaaaagaagtaagcaagtattagctctagctgttagtgcagatggtcgttacttggcaagcggaggtttggatcgtcacatccatttatgggatgttcggtcacgggagcacatacaggcatttagtggtcatcgaggagcaatatcttgtctttcctttggaccagactcatcggagctattctctggttcttttgaccgtaaaataatgcagtggaatgcagaagacagaacgtacatgaactgcctatttggccatcagaacgaagtcttgacaatggatgcacttagtaaagataggcttttgactgtagcacgggaccgaacaatgcatctttggaagataccagaagaatcacaactactgttccgtgctcctgctactgcatcattggagtgttgctgctttattgatgacaaggaatttttaactggatctgatgatggaagtgttgagctttggagcattatgagaaagaagcctactcacataataagaaatgctcatccagtattccgtaacaaccttaattcgcttgaaaataatgttgaggaaaatggcatacataaacctgaaagtgtctcatcagcccaatcatgggttagtgctattgctgcaagaagaggttctgatcttgctgcatcaggagcagcaaatggttcagttcgtctttgggctattgaacctgattctaagggcattcggccattatttagtttgagactggatggatttgttaattctctcgccatcccgaaatctggacgctttattgttgctggtgtgggccaggagcctcgtcttggaagatggggccgtgtccgatcagctcaaaatggagttgtaatccatccaatccgactaaaagaagagagcgaggacttgtag</cdnaseq>

Protein Sequence

<aaseq>MAPRPRKRVSRPKPRATSRGRGGGDEDPFFESEPKRRRGGGRDE DIESEDSDLEGVAAAAAGGVGDDGEEEEEEEEEQETAGEKKMRIAKELLKKVTDAARR RREDDEDEDEGEEAGRRRVADILLKRQFEESGRKRMELADRILQPDPEDGFKMLVKHR QPVTAVVLSKDSDKGFSASKDGVIVHWDVETGKSEKYLWPSENVLVSHHAKPPLSAKR SKQVLALAVSADGRYLASGGLDRHIHLWDVRSREHIQAFSGHRGAISCLSFGPDSSEL FSGSFDRKIMQWNAEDRTYMNCLFGHQNEVLTMDALSKDRLLTVARDRTMHLWKIPEE SQLLFRAPATASLECCCFIDDKEFLTGSDDGSVELWSIMRKKPTHIIRNAHPVFRNNL NSLENNVEENGIHKPESVSSAQSWVSAIAARRGSDLAASGAANGSVRLWAIEPDSKGI RPLFSLRLDGFVNSLAIPKSGRFIVAGVGQEPRLGRWGRVRSAQNGVVIHPIRLKEES EDL</aaseq>

Gene Sequence

<dnaseqindica>6020..6115#5326..5391#4556..4728#4116..4326#3500..3724#2287..2623#153..580#cctcccccttaaaccctcgcctctcccacctcccgccgcttccccctctcgctacgccgccgccgccgtcgaagcttgacagccggagtcctccgccgagccgagccgcgctagcagcctgcggctcccctccccccatccctcccccggccatggcgcctcgtccgcggaagcgggtctcgcggcccaagccacgcgccacctcccgcggccgcggcggcggggatgaggaccccttcttcgagtccgagcccaagcggcgccgcgggggcggccgcgacgaggacatcgagagcgaggacagcgacctggagggcgtggcagcggctgctgctggtggcgtcggcgacgatggggaggaggaggaggaggaggaggaggagcaggagacggcgggggagaagaagatgcggatcgcgaaggagcttctcaagaaggtgacggacgcggcgaggaggaggagggaggatgacgaggacgaggacgagggcgaggaagccggccggaggcgggtcgccgatatcctcctcaagaggcaattcgaggagagtggcaggaagcggatggagctcgccgacaggtgagatcttcttccccccccccctaaatgtcggtgggaattgtttgcaaattccaacttgcagccccctaaatgtggacagtagctctgaatgtttgcgccctcaattgcaacgaattttacacgacaatttcgtcagtggtcagagtcaacgaaatttacacgacaatttcgtcaatggtcacagttcataacctgaaatgaagaggacatgtatctctgatgttttagggtagcaatttggatcagagtgaggttccattgtctgtactaattgattagttccaaattaatagccctttgcgttttgcgagctgacaagcacacgggtcaggttacatgtatgcgtttggggttttgcttaggtacataggtgggtgcttttaggggtggaatatggacaacattcctgctaatatatggttatctgagtgtggtggtacaatgatatatcctcatggagggaaataaagggctataatcatggagagaaataaaggaatacactggcttgaaccagtaggttatactatgtggaaagagtatttattttcatgttaacttcgccaagatcttatgttattggcttattgcttatataagaccaaccgaacaaaatgcatcgaggggaaaatatagagttaacaacaaactagagatgtcctgaaaccaaccattaaaacagcctggttgcctaaaactgtcctggatcctctaaactttctaaaacctcgtatttattcttgattcttgttatcttgtaattttctgctttcaactttttgtcatatatttgtattacactgatcttacttgcaacataggagttagtttcgaaatacatgtgaagttcttgttgtgaatgatgcactcttggcctcttgggattcaagcagttgtccttttatggctccagcaagtgcattggtggtactgaattgggacatccaaacaactgtatattcaaatgtttctgttagaaccaaacatgagaggaaaatcgtttatagtcacaagtagtgggatgtgccataatggaagaagaaagttggagttcacatctacccctcctcttccgcttgctattggttttttttgcaacctgtacactttggcataatgttaatttacgcagaatctgctactctgcttatagacagtagttcacaaactggggcggttaaaatattaggaaatattgcttgctacatgattatatatgccctcaacacctgaaccatatggcatttattttatctacaaaattagatgtgtttgcatgtggagcttcttccaataatttctcatttgccatccccatccatttactttttacttaggttgtattctcaattcatgcgtgatctatttggataatgttccaaaactagcatgctgaaacggaatgaaacgtgagcggaagaactatacacatttagatggctcgggaatgcatttgtcatcatgattactgaaggtgctatccacaagtcacttgtatatgacatcagttatctgggtgtggtaactgtctacagctgttaaaagctatataaatatgataaccttttaattgaatccatcttttttttaaaaaaatctctaactaaaaggtgcaataagataatataagtgttcttgaaatactgatcacataaatggtgaggttaaaatagatatgactaaaatttgcaaaactattgcaggatattacaaccagatcctgaggatggctttaagatgctcgtgaagcaccgacaaccagttactgctgttgttttatccaaggacagtgataagggattttcagcatcaaaggatggagtcattgtgcattgggatgttgaaactggaaaaagtgagaagtatttatggccaagtgaaaatgtcttggtttctcatcatgctaagccacctctatcagctaaaagaagtaagcaagtattagctctagctgttagtgcagatggtcgttacttggcaagcggaggtttggatcgtcacatccatttatgggatgttcggtcacgggagcacatacaggtagttagtacagcaatttaacaataacatgttgtaatttaaatttctgatgatatacagttgaaaaatgcaattttgcttgcatccttggaccatgtgattgtcgttttgcattgtgtttatatctgtacatgtattgccatgcctaattctcacctgacagtcctgtccaatagctgttgccttattgatcaacctacaatattgtgtaggtaaaaaagcaagtgcatgatcaaatgctgcttgcaaatctatatagcactacagatagcctggtttgcatatacccattcttcactggtgcatttgttttgttattctagctggtgccaggttgttgcaacgcttgagcacggaaatattattcaattactagcttgtttattgtcaatgtaacctgtaatagaacacctatttcaatgctttatcagagattcacaacaattttctctgatacatatgaacatattattcaattaaactgaaaattaaactgaaaggttgctataagacttccatggactgcatagattttatttttttgtggtccacagaggaagtatttgagccatgttatttgttagacttcaaatatttagtgttttggttgcaaaatagatatacttttgtatatattttaagccaccaagaaggcaatgtagaatctcggagtggtattcttcaggggtagaatgtattagttgatctaaactagccataattgttccgggatatacactgcattttttcttactgaaaagagagtgccgaaaaatcagtgtaaccttgcttgcagtttaactgagctcttcttattggtgccatctttcttgttctttcaacattataaccgtctgttttgattattttcatcaggcatttagtggtcatcgaggagcaatatcttgtctttcctttggaccagactcatcggagctattctctggttcttttgaccgtaaaataatgcagtggaatgcagaagacagaacgtacatgaactgcctatttggccatcagaacgaagtcttgacaatggatgcacttagtaaagataggcttttgactgtagcacgggaccgaacaatgcatctttggaaggtacatctttccttaaaagtgtgtgtatgcacatgcactaagattatttacatattataactgaaagaaactgtttagttaaacattgttctaggattaagatacatagaaatattattttcccattgttcattatggtgcgtgactaaccaaaattcacatattgtttgtgaatccctaataatgttataatattatggaagtatgtctcttaaaaaaatctacttgtattgtatcattttcaaatgggaaatctaaataaccatgatgatgctgaccaaggtaaaactgattggaccacatgaatttaaggatatgacgcttagactggcttgactctggtgtgtgactcagtatttaacctgaaagttgaaaactcttgtgtggacagataccagaagaatcacaactactgttccgtgctcctgctactgcatcattggagtgttgctgctttattgatgacaaggaatttttaactggatctgatgatggaagtgttgagctttggagcattatgagaaagaagcctactcacataataagaaatgctcatccagtattccgtaacaaccttaattcgcttgaaaataatgttgagggtaagatgctatacgaagaacagtttactacttcatgcaaagttttcctatactttgagtttacatctgttttattttcaccttttttctcgttctgttattatgtagttctttttgtcgttgagatgtcaatcaatttgattatcaattttcatcatcaccacagtattttttttttgttctgtgtgtatatgtgtttcttatctattgctttgcacctcaaatgcagaaaatggcatacataaacctgaaagtgtctcatcagcccaatcatgggttagtgctattgctgcaagaagaggttctgatcttgctgcatcaggagcagcaaatggttcagttcgtctttgggctattgaacctgattctaagggcattcggccattatttagtttgagactggtaagctacactagctactccatgatacccctttggatgttattatgaaaataaaatgcaccatagataagctaccaaggtcccaagacacctctgactgttttgacttggcattactggaatttattgtctcagttctaggtcctttgggatttttagttgattgtataatcatattagttacgttcactaacattttctgattgttgtacttcataggagcgtatactttggcctgataattatactccctcggttttacagcatttatcaggaccaccatgggtcttagatcaagacaccagatctaagaattaatatgaaataactgtgcacctactaaatgccatactacaatagtacagctgctcagcttcttttatgcaattaattgaattgggtagaaaatgaaaacattgcaaatcatgcatcttgctttcccccaataaataaacagtgaaaatggcactttccaagaaaaggggcaatcgtttcagatgacaaggttattgtactgccaatgctagaaaaaactgagtctacatatttttactgttggttgcaaataattgatacattttgttctaccattatcaggatggatttgttaattctctcgccatcccgaaatctggacgctttattgttgctggtgtgggccaggtcagtatattaaatcccctttgttaattgttacagaaaagttcagttttttttaacctttgatatcagtatgttcccaagattatcttgagaatgcaacagggatggaaaaacttaattttccggtttaatcattgacattaagttcttgaaacttttttagagcatggaaaccctatccattttcattgattacaatggaaaatatcgccttgactaaaaagcttattacgagatactattcagcaaataaagactgggaagcagcaactatattgaacttatctttctggctaaacacttaactgattgaactaaaattcccactgtacacaacttacaacattttattaatagaagtagagcaccctatcctgctacgttttgaaactccatgacagcctcaaaagtgaatgcagattgcagaattgcagattcatcatcgcattctcttgttcattagccgatgaataggaatactactgccttgtaatcctagcactacaagtggaccagataccatttatgttaatccattccatagtcttctatactgttgcaacacagtactctttttagtttcgtttcaaaatcctaaattttatactgatatatcttttattaccaggagcctcgtcttggaagatggggccgtgtccgatcagctcaaaatggagttgtaatccatccaatccgactaaaagaagagagcgaggacttgtagggtagtagtagatggttgatgccgaaaaaccccttaaatgttgttaagtcacacaaaggacaaatcccttccaccttgcatttttttgcaaccattcccaccgatgaaattcgatacaagaggctgaacgggttaccttcacaagcaatgggaatttggagggggtgttacagaccatttgagctgaagaattgagatgtattctgtagaggaagtcccgtcaggcaattttgtagcattgcttccttaagtttaaagacagattttttttatgtatcaaacaagtaggataaggcggttttgaaaattggcctttgattcaaaaatgccttgatcaattgttctctacaattggagtggtttatatcagatagagaattgcacacgggaggattttgaggccctgaactatgtaccaatactttattgatctaatcccttaaaactatgcaactgt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0625900, RefSeq:Os03g0625900