Os03g0626600

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Revision as of 12:49, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0626600| Description = Ubiquitin interacting motif domain containing protein| Version = NM_001057237.1 GI:115454202 GeneID:4333500| Length ...")
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Gene Name

Os03g0626600

Description

Ubiquitin interacting motif domain containing protein

Version

NM_001057237.1 GI:115454202 GeneID:4333500

Length

6689 bp

Definition

Oryza sativa Japonica Group Os03g0626600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:24615450..24622138

Sequence Coding Region

24617268..24617375,24617724..24617808,24618010..24618181,24619686..24619806,24619885..24619968
,24620061..24620180,24620491..24620703,24620784..24620843,24620936..24621054
,24621239..24621297,24621428..24621762

Expression

GEO Profiles:Os03g0626600

Genome Context

<gbrowseImage1> name=NC_008396:24615450..24622138 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:24615450..24622138 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggttggctgagcaaaatttttaaaggttcagtaaatagagtatcaagagggcactacaatggaaacacccatgaaggccactcagcatggcacactaaagcctatgagcatgacagtgaccatgaagacatagatcgtgctattgcattatctttatcagaagaagatcagcggaaggggaaggctgttgatgaggtagatattgatcatcgtttacatgaagatgaacaacttgcacgggctctacaagagagtctgaatgatgaacctcctcgtcagaatgttccagtaaaagatgttcactcagagagtactccagcaactttcatgcccccatatatattcccttcaactggattaagggtttgtgctggatgtaaaactccaatcggtcaaggacggtttcttagttgcatggattctgtttggcacccccagtgcttcaggtgttttgcttgtgataggccaatatcagaatatgagtttgcagttcatgaaggtaacccataccatcgatcctgctataaggagcttttccatccaaaatgtgatgtctgcaagaactttattccaacaaacaaagatggccacattgaatatcgggcccatcctttctggatgcagaagtattgtcctgcccatgaaactgatcgtactcctaggtgctgcagttgtgaacgaatggagccaaaggatagtaagtacataacattagatgatggccggaaactctgtttggaatgcctgaatacttcaataatggacacagacgaatgccaaccactatatattgatattcaagaattctatgagggtttgaacatgaaagtggaacaacaaattcccttgctgttggttgagcgacaagctttaaatgaagccatggaggccgagaaaactggacatcaccttgctgaaaccagaggtctctgcctatctgaagagcaaattgtccgaactatactaagaagaccagtaattggaccaggaaacaagattgtagacatgattacaggaccatacaaactggttagacgctgtgaagtgactgcaattcttatcctatatggccttccaagactgttaactggctccattctggctcatgagatgatgcatgcttacctccgacttaagggataccaaactcttgatccaaaggtcgaagaaggcatctgtcaggttctagctcatatgtggctcgagtcagaaataacatcaggatctagtagcatcattgcatccatcgcagcatcatcatcgtcatcgtcgtcatcttcagcaccctcatccaaaaagggtgtacagacggacttcgagaagaaacttggagagttcttcaagcaccagattgaaacagacccttctgatgtatatggagatggttttcgagatggcattaaggccgttgaacgctatggcttgagaaaaactcttgatcatatgaagcttacaggggttttcccgtgttga</cdnaseq>

Protein Sequence

<aaseq>MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHED IDRAIALSLSEEDQRKGKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVH SESTPATFMPPYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE YEFAVHEGNPYHRSCYKELFHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETD RTPRCCSCERMEPKDSKYITLDDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNM KVEQQIPLLLVERQALNEAMEAEKTGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKI VDMITGPYKLVRRCEVTAILILYGLPRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEG ICQVLAHMWLESEITSGSSSIIASIAASSSSSSSSSAPSSKKGVQTDFEKKLGEFFKH QIETDPSDVYGDGFRDGIKAVERYGLRKTLDHMKLTGVFPC</aaseq>

Gene Sequence

<dnaseqindica>1819..1926#2275..2359#2561..2732#4237..4357#4436..4519#4612..4731#5042..5254#5335..5394#5487..5605#5790..5848#5979..6313#cctgcttggggggatcctcgggcttcttgtcgcaagaaaccaaggaggaggctttagccgaattacagggctacttggtgagtcttttggtgatcctcaggcaaattatggtgatccttagttgttttctgtagaacttggggggataatgatggcgttttgcggtgaattggtgaattgtgtactttgtaccagctggttgctgtgtggggactggcataatgacttttgtttctgttaaaaagtacaggagttcaggcttgaaagtggtggccaggtggggttgccctgatgccttcaatgatctgattgtttctatgcggtccctgtggttctgaactcgaggtatttttttttcctccagtgatatttgcttttccttttttttttccttcgatactgcttgcatctgtgttgttaaaagttccatttttcatactctttattgtccgttttgtcttcgttagtatctgctcattggcatcatctgtgttcaatgattgtttgactcatgactcttttatgtgctttaccatgatttcaagatcctctctagcttttcgaggcctcctcatggaacaaatgtttacattgatcattcaatttatctattgtctttgctaatttgttactactaacaagagcaatattgacgcatcatactgtaatggcatcacaaaaatgtaaaattgctaccagcgggtaccacatagcctgagcaactgtttttttgcaggacccgggtctggattttgtggaatttgctgttgtcagaggttcgtgtgtattgcttgtgttggtccttttcctttattggctcggaggaataccaatcatagggagatatgccaaagagactggacatgtaatgtgattggttgctggtcattttagttcatataagagcattccacattacattttcatttccatctgtatttttctgacttctcacatacctggccttttccaaggcaagaaagcaattttatttttaactggatcctgtcatggataatttattccttaccgccaatgtccaccaatttatagaggtttatatcttacactatgtgcttgcatgccaacaattttacctttttaccagtttggaggcacaccaagccaatatctaatcagataaatgaatatttgatatcctgttctgtatgtagttgatattctgtttcaaaacaaaagagcacatgcttgaagcacccagtaaattatacatgtgatgggcagatggggcagacactgtagggatttttatctacatattgtctcttaccaaatacatgctattgcagtcttcttatttatgagtactatatacatgttattgcacaatttcaatatgtatttacagatcgtttcctctacaaacctatagtgtaagaatccagaagggaactagtggctctaggcttggaaaggtatagtaatgcggttattaaataagattagatgctggaatcacatatatttgattatgttggtggtacactattagttttgtagaacatcagtttctactactgaaatatgtgtaattgaatgtggggaaaatgtgtagtggaagccatccatttttggatccaacggtagtttccaggtttccactacatatgtggtttgcactacatattttccctagaatctaggcctataaccttatattgtccttctgacttcctctcacaattggctttgaatgcaaataaaacctcatatgtatgcgtttcttttagtttgattcttaataaatttgttatgcagtgcaggtacaaggattttcgtctgccaatacttgaaaacatgggttggctgagcaaaatttttaaaggttcagtaaatagagtatcaagagggcactacaatggaaacacccatgaaggccactcagcatggcacactaaagcctatgtacggcccaattctgcctgtcttttcatcttcccacactagccatcttaagtcatacatactgtgagacacagaagaaaatttcgctcctgccaattgcatataaaaaattttctcactgagtattgccattttcagttctgaatttctcacctttcttttgttcagtcatgtgtatttaagatgacagttagaagcttcatattgtaagctatagatagtaaatgaataaaattctgtgcttgattattcaggaccaaaaaagcttcttcctgataaaaaaaaatggatggactggatgttactttatgtacttcactatagctaacttggttctaatcactataggagcatgacagtgaccatgaagacatagatcgtgctattgcattatctttatcagaagaagatcagcggaaggggaaggctgttggtctgtatcattgtcccatcttaacctgttttggtcatctttagtttagagattattggatttggttttcctgcaacatgatattcactttaggactagcatttctaggttgacttgaataaatgaggacctccatatatgttctgtactactgttgagcaaaagcattcaatattaatgcattttcttttgtttttacagatgaggtagatattgatcatcgtttacatgaagatgaacaacttgcacgggctctacaagagagtctgaatgatgaacctcctcgtcagaatgttccagtaaaagatgttcactcagagagtactccagcaactttcatgcccccatatatattcccttcaactggattaaggtatttgttataatagcacattatcatgctggcctctccttccaatttaataaacctttatatgccaattcagaagaaggcctcttttttttttttttttaacagacactagtcagttaaatgtgcattgcatgccacgttaatgagattatgagaggtagtaaaagaaagtttggtacagaacatgtggtattttttttattgtggagctaactgtacagtcagtcagtgtcatatgtgttaaacttcgatctgttgctatattctggtaatcgctcaaaagaaaaaaaagaacaagatggcaaaattatttgcgggtttgaatgtttgatccagtatattaacttgggagaggaagtatacagtaagattgacggtttcactgcatgagatgaggtctgtaggtagcaagtctgtgggctgtgaacaaatcctacattatattaaaacagcagcaagtgcttttctagatattggctgccaggattgattaaacaaggcccgaactctcgtagcatcagaagattgctatgtctgcttctctatttagctgtaccactactccaaatgtagcattccttatcttttgttcttttccagtaccacattacttcccttgagtaatttgtccctggcacctgagcccactctctaccaagatgcacaataaaataaaatatcaatatgtagggcctgtttggtacagctccaactcctaaatttaactccaggagttgagtctggagtggagttgtggagctgcctaaacccagctccacaactctagtacattttgtgagagagctccacccaactccactcccagttttagtggagctgaaactgtttggctgagctccagctccacccctcctggagctggagctggagttgtgccaaacaggcccgtagtccctcatacagaagaacactcgagcaagcgcatcggtatatatattttcacatccttgaaaaagtgatgtggctgaaagcttatcagtgtttccgatatgtctttttttgcatatgtagaagatcattgtgtgagagccaacatttggttggggtgatgagcagggttcacaattttggtacgcaaaaacattttcagtgggcgcgaggggctgaaatttggaaattttgagttagcaatctagaattttgaacaatttcttgctgaatatgatcgattgttttttctaaattcccaacaaaattcgaaattctcgaccggaaaaatgtcctactggaagacctgctagtagacctgaaattcaaaaattacgttgtggaattgtgaacccaaattattagcactgaatatatgtactatcttataatcatcttgattgggtagggtatgggtatgaaaattataaacgcattcatagttttaactggtatcttcttcatgtctgttctacttgggttctcaccctgttctagtgcatgcggtggaacccttagggttctctgattctcatgtaccacattgacggtgtagggtttgtgctggatgtaaaactccaatcggtcaaggacggtttcttagttgcatggattctgtttggcacccccagtgcttcaggtgttttgcttgtgataggccaatatcagaatatgaggtaaagagacctagcatatttcaacataacatgctttaagtaaatgagataactgacattatccattcatttgggaagtttgcagttcatgaaggtaacccataccatcgatcctgctataaggagcttttccatccaaaatgtgatgtctgcaagaactttgtaagaattcatgttggatgagcatgagaatttagtaatagctactttttaactttatctgttgagttgtgctaatgacatttgatgatcagattccaacaaacaaagatggccacattgaatatcgggcccatcctttctggatgcagaagtattgtcctgcccatgaaactgatcgtactcctaggtgctgcagttgtgaacgaatggaggtttgtgctatcctataaaaaagttatacatgtagtgattcaaatggaagtgtcaggatgtaactaacacttcggcatgttccctcaacaaaaaaaatagaagtttggcatgtagcttctgttaccacccttacaaattttttttcgaaatcacccttacaatttaaatgtgtttgttttcaatatgtgcctatgcacatgcatttgatgatttcatagcaatgtccattcgtagtgaaaacgtattttaattatgaattggtgaatctaatgacttcccttcttttcttttgtttaatctcaatgctagccaaaggatagtaagtacataacattagatgatggccggaaactctgtttggaatgcctgaatacttcaataatggacacagacgaatgccaaccactatatattgatattcaagaattctatgagggtttgaacatgaaagtggaacaacaaattcccttgctgttggttgagcgacaagctttaaatgaagccatggaggccgagaaaactgtaagtgaaatgatcattttataatattctaacagtaatgtacattatttaacttattgttcctttgacctccttaatagggacatcaccttgctgaaaccagaggtctctgcctatctgaagagcaaattgtccgaactgtacgttcttaaaaataatgccttgctttagttatctattgaatatgtgaacttgatacctggcttatggctaaataacataatatatgcagatactaagaagaccagtaattggaccaggaaacaagattgtagacatgattacaggaccatacaaactggttagacgctgtgaagtgactgcaattcttatcctatatggccttccaaggtatattgaattattttcatgttttatcgatctaactaatgagtactattatactgcatttactattatttttcgtttttccccttgttattggcgttgattatgcaactggcctaccaacttaggagaagttatttgtcctgaatgcatagattttcatttccattattttgattacatgcagactgttaactggctccattctggctcatgagatgatgcatgcttacctccgacttaagggtactacagttacccttttttaccttttgcagctatatctattcatacctctgtggattaacgtaggctttcatgttaaatttagttctattgaatgttacatttacatcttaataacaatttttgtcaggataccaaactcttgatccaaaggtcgaagaaggcatctgtcaggttctagctcatatgtggctcgagtcagaaataacatcaggatctagtagcatcattgcatccatcgcagcatcatcatcgtcatcgtcgtcatcttcagcaccctcatccaaaaagggtgtacagacggacttcgagaagaaacttggagagttcttcaagcaccagattgaaacagacccttctgatgtatatggagatggttttcgagatggcattaaggccgttgaacgctatggcttgagaaaaactcttgatcatatgaagcttacaggggttttcccgtgttgaagtcacaaatttagagtatgaagaatacattgaggaattttggttcaagttagacatgccaaaagggtatatatgctgttaacattaactgagcaatagaatagacgagaaacaatgattttgttttagtaaatttcagaaagttacaactatcttgtctaaattatcggtttgctgcaatattagttggctatttcagaaaactacagcagtagttgattttatcagaaaactgttacactttgggcctagatgtcaaacacttagtttctgataaaatcattcgctatcgttgttgttttgtgaaaaatgtttggatgaagttctaggcttctagccatagtgataattttgactaaacagttatagttttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0626600, RefSeq:Os03g0626600