Os03g0626700

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Revision as of 12:49, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0626700| Description = Multi antimicrobial extrusion protein MatE family protein| Version = NM_001057238.1 GI:115454204 GeneID:4333501| Len...")
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Gene Name

Os03g0626700

Description

Multi antimicrobial extrusion protein MatE family protein

Version

NM_001057238.1 GI:115454204 GeneID:4333501

Length

6075 bp

Definition

Oryza sativa Japonica Group Os03g0626700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:24630430..24636504

Sequence Coding Region

24630727..24630831,24630973..24631059,24631172..24631290,24631469..24631707,24632103..24632159
,24632264..24632350,24632777..24633318,24636124..24636321

Expression

GEO Profiles:Os03g0626700

Genome Context

<gbrowseImage1> name=NC_008396:24630430..24636504 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:24630430..24636504 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaagctggtgagcaagagctggcaggagtcgaagctgctgtggcacatcgcgttcccggccatcctgacggccgtcttccagttctccatcggcttcgtcaccgtcggcttcgtgggccacatcggccaggtcgagctcgccgccgtcaccgtcgtcgagaacgtcatcgagggcttcgcctacggtgtcctgctaggcatggggagtgcgttggagacgttgtgcgggcaggcggtgggtgctgggcaggtgtccatgctaggcgtctacatccaacgctcatggatcatctgtggcgccaccgctgtcatcctcaccccgacctacgtcttcaccgccggcatcctcatagggcttcgccagcccaccgacatcgccgccgttgccggcacctacacccgttgggtcatcccgcagctcttcgcctacgctgccaacttccctctccagaagttctttcaatcgcagagcaaggtgtgggccatgacggccatctccggcatcgccctggcgctccacgttgtgctcaactacatcttcctcacccgcctcggccacggcctcgtcgccgccgctctcatcggcaatgtcacctggtggctcatcattctcgcccagttcatctacctcgtctccggctgcttcccggaggcttggaaggggttctccatgctcgccttcaagaacctcgccgccttcgtcaagctctcgctcgcctccgccatcatgctctgcttggagctttggtactacacagcagtgctcatccttgtcggcctcctaaaggatgccaaactccaggttgacgtcatgtctgtctgcatcaattaccagctctggaccttgatggttgcactgggcttcaatgcagcagtgagcgtgagggtgtcgaacgagctgggcgcgaaccggccgaaggcggccaagttcgcggtggcgatggcggtgtcgacgtcggcgatcgtcggcgccgttttcatggccgtgttcttcatttggaggacgcagctgccgcgcttcttcagcgacgacgccgacgtggtccgtgagtccgccaagctcggctacctcctcgccgcaaccatcttcctcaacagcatccagcccgtcctctctggtgtggcgataggagcagggtggcaatcactcgtggcgttcataaacataggctgctactacctggttggcatcccactgggtgtcctctttggcttcaagctgaagctcgatgcaatggggatttgggtgggtatgtcacttggcacgctgcttcagacagccatactggccttcatttccttcaggacaaaatgggagagacaggccatgatggctgaggagaggatcagagagtggggagggaggaacgacgacgcgctgccgtccacgacgacgccgacggctgatgatcataacgtagatagatga</cdnaseq>

Protein Sequence

<aaseq>MGKLVSKSWQESKLLWHIAFPAILTAVFQFSIGFVTVGFVGHIG QVELAAVTVVENVIEGFAYGVLLGMGSALETLCGQAVGAGQVSMLGVYIQRSWIICGA TAVILTPTYVFTAGILIGLRQPTDIAAVAGTYTRWVIPQLFAYAANFPLQKFFQSQSK VWAMTAISGIALALHVVLNYIFLTRLGHGLVAAALIGNVTWWLIILAQFIYLVSGCFP EAWKGFSMLAFKNLAAFVKLSLASAIMLCLELWYYTAVLILVGLLKDAKLQVDVMSVC INYQLWTLMVALGFNAAVSVRVSNELGANRPKAAKFAVAMAVSTSAIVGAVFMAVFFI WRTQLPRFFSDDADVVRESAKLGYLLAATIFLNSIQPVLSGVAIGAGWQSLVAFINIG CYYLVGIPLGVLFGFKLKLDAMGIWVGMSLGTLLQTAILAFISFRTKWERQAMMAEER IREWGGRNDDALPSTTTPTADDHNVDR</aaseq>

Gene Sequence

<dnaseqindica>5674..5778#5446..5532#5215..5333#4798..5036#4346..4402#4155..4241#3187..3728#184..381#ctcaatgctagctaaaccatagctagcttgcctacctcctcctcttcttcttcttcttcttcaaaagcttcttcagagtggtggcgatatcgactacacactgttcttggctacatcgattgattgatcagagagagatataacgatatcgatcggatcagttaaatagagtaattgatcgatatggggaagctggtgagcaagagctggcaggagtcgaagctgctgtggcacatcgcgttcccggccatcctgacggccgtcttccagttctccatcggcttcgtcaccgtcggcttcgtgggccacatcggccaggtcgagctcgccgccgtcaccgtcgtcgagaacgtcatcgagggcttcgcctacggtgtcctggtacgtatatatactcaatacgcgcaacctcatcgcacacaaactgaggactcatcatctctcctctcctcttccattaattgctaacttttgatcaccatcacatatatactttgcagcacacatgttagttactgtgtttgtacgaaatgcatgttcattaattcagaacatcttattagatttgcatcgagctagctaaccctcttaaaagttcagacagttaatacagaggaggtaataagcttattatattagtgctgcttccagctacaagttcatatgtaaattagtacggctgtgttctttccctcattttccaaacccacctatgttgttttccgtacgtacgcttttcaaactgctaaattatatgatttatgcaaaaaaaaaaactttctatataaaagttgttttaaaaaatcatattaatccatattttaaaaaaaatagttaatacttaattaattatgcaataatacgggaggaggggtctctcctcccgaagacagcctaattgtttaacaccacaaaaacgttgaaaaatccactcaacttgcttaattggtaaagtttgtcacagttagctagctagcatattaattcctctatagttggtacgtgcacttgtgcgaggaattagattcggctagcttgcatgtttttttctcaaaaactcttctccttgccaccatttcgttcaaaacaaaagcacttttaaaattaaattggaatatttatttggagcgaacctgtgaatgaaatacatatgtatatatagctggctaagcatatagcactacctaaattaataagtaaattaagcaggccataattaacgagccgagctaaaccatgcgacaaagggtggtttgcacgtctccatctgcatctgccccggctgtaatctacaccatcaatttgtttccttcaattaattggaggatttcaattcgatccatcatatccatgcgtcatgcatgcatccggattaagcagctagcagaaacgaatttgccaagaaaattaataagctcgatcagctacaaaatatggagtacagctaaacaaaaacaatttaatgaatcgattaatcaacggctaatatatcgattgatgtgtactgatgaccacttttagttcgattctagctagtagcaagcaagtctagcttgttaagtacttatgcctttatatggggccatgtcgaatataggcgtacaactaaagaaacattagttagttaattaatacatgtcacggtgctttaacttaattataatcttcatccacgaacgtttgtacgtacggcatactacacgttgaactggcattataatctttgccttttccgacacatgtacgctagtgattaattttgtggttttgggaaagggactagggatcacatgcacaaattaaaggtgaataaagcaattcaagctaattgatttaccaaccaacaaccagatagatgctttagctagcgtgggcaatcagaaaaccacgcaaattaaggaccatcaaataatgcctggttgaagatttgccatctcattctctaaaatgatgatgatcatcacttcccggaagctggtagaagctagcaccaatactgcaactaaccatgtacgtacacacgtacacgattcttcccactatcgttccatctctatatatatacccctctctctatcgcgcgtctcttatttatctatctctctccgttcaaaaataattataagtattcgtgaacggtacggtgtgcgtgtcgagattgtgcaccgatcacatcatggtaaattcttcccactgtcgatctatctatatatatccttctcttagcacaacgatgtgtcgcgtgtctcttatttgtctatctgtctctctctctctattcgtaaataactgtaagtattcacgaacggtatacgtgtgtcaagattgtgcaccgatcacatgtaatagattgtagcgagttaatatacatggttattgagaacttgaggatgactggatgatcgatatagctaggtagctagacaagtagctacagctaggccaaacatttgttccggcagtggatggagctaggtgatcgatcgagattgagtgttgaccgaatgggcgtagtaggagtaggacatggatggatggatcgatggcgacgatcgatggaggcgtctcgacacgtacgacgtcgagcaaaccaaacccaattcaaccaaaccaaacccattttggtatttagctagctagctctcgatcgctttctttttagattagtagatttgttcgaccgtctccgaatcacgccatttcgatagatgctccacttgcacggccggccgatgatttttgtaggcaccaaatcctattcctatacttacttgttgttccctcggatcaagttctattttgttagtacgacgggaaaagaacattattttaattaattcagtggttttcttcttggttcatcatgtactcaacaaatttctgctgattctatgaaactggattatatatggagaaaacaatgggaaaaaggtaaaagaataactcccaaaacatgaactgatcataagtaaaataataatgagcatataaaagtatcaaaccaagtatgctgggtaattttatcattcttgagaaggtattggaatataccatattttctagtgtaaaatttggtccctccatgtactaactactttaagataccaaaaattttattgtaaaaatttagatatctcgagatactttctaacagactataaaatttctcatctatgctacatacagctaggcatggggagtgcgttggagacgttgtgcgggcaggcggtgggtgctgggcaggtgtccatgctaggcgtctacatccaacgctcatggatcatctgtggcgccaccgctgtcatcctcaccccgacctacgtcttcaccgccggcatcctcatagggcttcgccagcccaccgacatcgccgccgttgccggcacctacacccgttgggtcatcccgcagctcttcgcctacgctgccaacttccctctccagaagttctttcaatcgcagagcaaggtgtgggccatgacggccatctccggcatcgccctggcgctccacgttgtgctcaactacatcttcctcacccgcctcggccacggcctcgtcgccgccgctctcatcggcaatgtcacctggtggctcatcattctcgcccagttcatctacctcgtctccggctgcttcccggaggcttggaaggggttctccatgctcgccttcaagaacctcgccgccttcgtcaagctctcgctcgcctccgccatcatgctctggtaatcattcctggatccggtcgttttcatttacttttgacaattttgaccaattaatgcacacatagggtggcaattaccttttgaaaatagaatgaccaaaatatacacctcttgataaacccttgtttaaataaaaagaaaaaaaatctaaatgcaatatttggcggtattatttcttctgtagcaagtgttcaaattttgatttgagccaacattaagctagattcttcggtggacagccacaagggcaaaataggaaattgtgcatttgaaaaggtggaagaaaattttagtcaaagttgacaaaattatgcaaacggatggagtaactaatttgctacacctaatcatatatgcttgcgtcaccaattcaactcacctaattttgattatttattttgatcttgttgatgaaatggttagcttggagctttggtactacacagcagtgctcatccttgtcggcctcctaaaggatgccaaactccaggttgacgtcatgtctgtctggtatgtgacgaatttcaccaactcccttttataactaatttctatatagtatatatatatgtgtgtctttgcatataattaattaatccgatgaaaatttgcagcatcaattaccagctctggaccttgatggttgcactgggcttcaatgcagcagtgaggtaatcaataatctaccaccattctagctaattactccctccatctatttttgataggcatattttcaaatctgaaaattttatttttaataggcatatttcaatccaacgacctatcatcttaatgacttttttttggatttaatgcgtaactctctattcttctacacaagattggcaacataggcatcgaaaaatataaatattaatgaatcgattgtttacgaagaatgactagtagcatgtttaaatagatgataagtacaattacttatccttggtctgtgtgccaagatgaaatatgactatgaaaagtagatggagggagtaattactgaacaattaactaaattgacgctgattaattactgcttcaattcataatatatgcacagcgtgagggtgtcgaacgagctgggcgcgaaccggccgaaggcggccaagttcgcggtggcgatggcggtgtcgacgtcggcgatcgtcggcgccgttttcatggccgtgttcttcatttggaggacgcagctgccgcgcttcttcagcgacgacgccgacgtggtccgtgagtccgccaagctcggctacctcctcgccgcaaccatcttcctcaacagcatccagcccgtcctctctggtaaattaattaaattcctttcattttatcaacttaattatcattagtggaaattacttgatcgaccgatcattcattcgagacacattgttttttttattattattttggatttttagctggagaagcagttgatatctgaacaattagataattttgggtggtctgaattttgcaggtgtggcgataggagcagggtggcaatcactcgtggcgttcataaacataggctgctactacctggttggcatcccactgggtgtcctctttggcttcaagctgaagctcgatgcaatggtaatatatagcacaagttcaatccgcacaaattaatctgaattagtaatgcacatatatattctgcagcacaactatatattgatatgatttgctactatttattttgcaggggatttgggtgggtatgtcacttggcacgctgcttcagacagccatactggccttcatttccttcaggacaaaatgggagagacaggtgagttaacagctatctcctcttctgattaagctaaataattaactctgaacacatcactgtcaggctaagttggagagttcccttgaagattaatctgaaataagttaactgacaaagctgtaaatatatatttttcaggccatgatggctgaggagaggatcagagagtggggagggaggaacgacgacgcgctgccgtccacgacgacgccgacggctgatgatcataacgtagatagatgatgatgagatcagatggttaattattccttcaaattaattaaacttgcagttaaatagtggagttatttatacacacatcacaaaagctgagtaggcttgtagaattattttgtacagattcatatatggtctatgtagagagagaagctcggtttttataggtgctaaacctcagcttgaatttcgttttgtcttgccttccttttcttccattttggttggaagatgatcagctggaaattattgtactactgaggttcattttcacattgaggtgattttttgagctccgtaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0626700, RefSeq:Os03g0626700