Os03g0639800

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Revision as of 12:50, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0639800| Description = Snf7 family protein| Version = NM_001057274.1 GI:115454276 GeneID:4333538| Length = 3534 bp| Definition = Oryza sat...")
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Gene Name

Os03g0639800

Description

Snf7 family protein

Version

NM_001057274.1 GI:115454276 GeneID:4333538

Length

3534 bp

Definition

Oryza sativa Japonica Group Os03g0639800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:25357145..25360678

Sequence Coding Region

25357290..25357383,25357489..25357553,25357653..25357688,25357810..25357890,25358475..25358546
,25358656..25358724,25358824..25358931,25359019..25359069,25359765..25359799
,25360006..25360050,25360458..25360491

Expression

GEO Profiles:Os03g0639800

Genome Context

<gbrowseImage1> name=NC_008396:25357145..25360678 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:25357145..25360678 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacatcttcaagaagaaggtcgaccccaaagaggctctcaggaccagcaagagggagatgtcagttgctacacggggagttgagagagagattggctccctgcaaatggaggagaagaaactagttgctgagattaagaaaactgctaagacaggaaatgaggctgcgaccaaaatcctagctcggcaacttgtgaggcttaggcaacaaattgtcaatttgcaaggcacgcgggcacaaatacgtggagttgctactcatacacaggcaatgtacgcaggcacttcaatatctgcaggaatgaaaggtgcaagcaaagcaatggcagcaatgaataagcaaatggaaccaacaaaacagatcaaggttatgagagaattccagaaacaatcaaatcagttggacatgacgcttgaaatgatgtccgatgctatagatgaaacacttgataaggacgaggcagaagaggaaacagaagaacttactaaccaggttcttgatgagattggtgttgatgtggcttctcagctgtcttcagctcctaaaggtcgtattgcggcgagcaacaggaaagctgagagcaaccaagcacgaaatgccgctccccccagaaataacgtggagcctgaatcctctgctgaagttgacgacctggagaggagactggcttcacttcgccgcatctga</cdnaseq>

Protein Sequence

<aaseq>MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVA EIKKTAKTGNEAATKILARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGM KGASKAMAAMNKQMEPTKQIKVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETE ELTNQVLDEIGVDVASQLSSAPKGRIAASNRKAESNQARNAAPPRNNVEPESSAEVDD LERRLASLRRI</aaseq>

Gene Sequence

<dnaseqindica>3296..3389#3126..3190#2991..3026#2789..2869#2133..2204#1955..2023#1748..1855#1610..1660#880..914#629..673#188..221#ccttcccgttgggctcgcgcggcgccgtcccccctctctctctctctctctctctctctctctacactgctcacgcctctctctctctctgctcccaaatctgcgtgggagagagagagagagagaaatccagtggggggagggattggtctctggaggggatctagcagcagcagcagcagcagccatgaacatcttcaagaagaaggtcgaccccaaaggtgcggttgcggttccacttcttggatttcgctcctctttttcttggtctatgtcggcggggtggggtttctaccgtaggggtcgatttggtccgatctgcagctgcgttgcgatgatgcgtctgttcttgcggtcggagagtgagatccttgctgggttttgggcttttcttggtgtggattggagagtgggggtttctttttcttgcgttgattggggggggggggggggttagggttttagggtgactcgtacgatgtgcattttcgtttggtggggggggggggggtggaggaatctgtaatctctgtggattatttgtggaaaccagtgaataaaaaagatttgggggttaagtcttttggtggtgtgatgaactgatggtgatgtttaatgtcacttgcagaggctctcaggaccagcaagagggagatgtcagttgctacacggggtgagaacaatttccatctgctcctctttctgttgctccctccactgatccacccacaaaacattttaagttcatgaatatgggtggtttggtttagtagtggacaaattcatgacttgtatcgcagcacagttgcaccgaataagattacagcagcttagcttctgacactaccttttctctttttatttttatactaattttaggagttgagagagagattggctccctgcaaatggaggtatgcacatctctttatcctatatataattcaggatacaaaaggttcagaaaagacaatgtgacaaactttggccatatttcgcattaccgagtactgagtacagagtactactgagtaggcagcattaggtagcactgacggtatgtcagaaaaaaaaagtaacagtttggtcatgtactcatgtttatgttgggaagccagtattattctatcatcatgcttatggtgtccgatggactgatgtttgcaatgtttagtatcaggagtgcaatagcactgctatttttaagagaaatactctatcttttatgttcatttaattttaggtaaattgaggttgatagcatcactttgaaccttgacaacatatgtgcttgtcttcttcaatatagtaaagttagcctagaaccagatgaaaagggctttgggtagactgctagttctttccatgtaactctggcagctcaaatactctgtaaggtgtaacaagaacttgagtgctttttgttgtgtacttagttttttatgctgccatgccttcatggtctggaagtggaaaacatttcagcctggatcagaaaagcatatcgatcagcactgttcggaactcttttttttttcacctaccatctacagtaacttgtgcaaaatgtaccttctgatttggtaatgtcataattgtaccattccaggagaagaaactagttgctgagattaagaaaactgctaagacaggaaatgaggtaagccttttaggatttgtgggagacccctaaagtccattctggttcttcctgatatcctataataaatgatctggatcactctaggctgcgaccaaaatcctagctcggcaacttgtgaggcttaggcaacaaattgtcaatttgcaaggcacgcgggcacaaatacgtggagttgctactcatacacaggcatgtctagttttcaatttgttttatgcaactgcatgttctggctgttggcaaaacacatttagtcatttatgatcaaaacttgtctcttttattcaggcaatgtacgcaggcacttcaatatctgcaggaatgaaaggtgcaagcaaagcaatggcagcaatgaataaggtctgatgaaagacagctatggttggctgttgttaaacatgttatctaatctatagtcatttttcttgtgaacctttttggtgacacgttatactgtttatttttccagcaaatggaaccaacaaaacagatcaaggttatgagagaattccagaaacaatcaaatcagttggacatgacggtaagaacatttagggcatgctgggtttgttacagtataaagtgggaatgttccgccatgttaccacttgaatctttttgcttaattagttgctttgcactaataaacatagacaagatcagggcagacatacaacttagcacaatacagagaatcattaaatgttgtatgaacaaacttgttttgtggagatgattcataatagccaatgcaattattgtaggcttcaaacgatctgtactgttctcagatatagttatgttggacaagacatcatacgattattaactattttaatgcaatacaacctattaacaatctatgtgatgagtgacaccttttaattttatgtagaataatgccaacctgctcaaagggctaactaataatatatgatcatgagcagttaatctttcgaaagattgcctagatttttattcgtgcaatagcagatctgtgactgttcctccaaatgttaaaacacaaatgatgtgctctagctgccaccatccatgcgccaacttagtaccacttgtctcggctactccggagaaaagaaagataaatcctatttttacatgcagcttgaaatgatgtccgatgctatagatgaaacacttgataaggacgaggcagaagaggaaacagaagaacttactaaccaggtaaagtattgcgctgtacatatcagttgataaggatttttctgaatatatggccagaaattgtgcttcatgatttttccattcgctcatatgatatttccttctgttcccccctatgcaggttcttgatgagattggtgttgatgtggcttctcaggtaaatttattcctcaatatgccatcatgttagttgttaggcatcatacaagtacctcataattctaaatgctgactccaatccttcatgaaaatacagctgtcttcagctcctaaaggtcgtattgcggcgagcaacaggaaagctgagagcaaccaagcacggtataatgtttctttttcagtcatcaaccgagcaaatgaatttgggctctgttctgcacctttctatctgttctagttttcctgatgcgcatgttgtgcctgcagaaatgccgctccccccagaaataacgtggagcctgaatcctctgctgaagttgacgacctggagaggagactggcttcacttcgccgcatctgagcagctgataaatatatagtgcatctataattctatatgtaaatttgtttcactcaacatagcttgtctgaatatgtgcgagtagagtattgtaggcaaacaacaagatttaaataacataattgaaccttcggattttctatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0639800, RefSeq:Os03g0639800