Os03g0643250

From RiceWiki
Revision as of 12:50, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0643250| Description = Conserved hypothetical protein| Version = NM_001186630.1 GI:297722390 GeneID:9269462| Length = 5745 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0643250

Description

Conserved hypothetical protein

Version

NM_001186630.1 GI:297722390 GeneID:9269462

Length

5745 bp

Definition

Oryza sativa Japonica Group Os03g0643250, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:25561719..25567463

Sequence Coding Region

25561719..25562677,25565464..25565499,25566046..25566151,25566241..25566388,25566482..25566609
,25566710..25566845,25567315..25567463

Expression

GEO Profiles:Os03g0643250

Genome Context

<gbrowseImage1> name=NC_008396:25561719..25567463 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:25561719..25567463 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagtcgtcgtcgtcggtcatcttcctgggcaccggctgctccggcgcgctccccgacgcccggtgcctcatccacccgtccacgccgccgtgccccgtctgctcccactccctctccctcccgccggagcgaaaccccaattacaggtgtaacacctccctcttgatagattactgccaacatgatggaatccataagtacattctaatcgatgtcggcaagacatttagagaacaagttcttcggtggttttctcaccacaagattccttatgttgattcgattattctcactcatgaacacgcggatgctgtcttaggtcttgatgatgtttgggtggtacaaccaagtggttgtagaaatggcttgggcaaagttcctatttttctcacccatttcacaatgaacagtgttgcagcaagattcccctatttattgaaaaataagctggaggaaggtgatgaaggttcccaagtcattcaactcgactggacgataattgagggtgacatcgacaaaccatttgtatcatcaggattagagtttgtgcccctgccagtcatgcatggagaggattatgtttgtttaggattcctatttggaaggagatccagaattgcatatttatctgatgtctcaagaattctacctagaactgagcatgggagatgctggcagttgccaccttactctgagtcagtatcgtcgtcgtccggcgtctcgtcggcggcggcggccggacgcgccatatcgctgcctgggtgccccgacaagtgcggcgacgtctccatcccctacccgttcggcgtcggcgaccgctgcgccgccgtcggcctcaacccgtacttcaacatcacctgcgacgacgccgtgaggccaccggtcccgaagctgggcgaccctggcatggaggccgaggtcctcgacatcacgctggagcgcggcgagatccgcctcaccggcttcctcagctacgtctgctacacgtcgagcaacagctcgtacgccagcctcccgggcggcatcttcgtcggcggcacgcagctccgcgtctcgccgtcgcgcaaccagctcacggtgatcgggtgcagagctcttggcctgctggtcggcggcgcccacgcgggcggctccggcgacggcgacgagtacgccaccggctgctacacctactgcgccagcctcaacagcacggacgccgacggcgcgccctgcgccgggacggggtgctgccaggcgcccatctcgtcggacctcgcctacgtcggcgggacgttcccgagcaactggacgaacagcggttggcgcttcaacccgtgcttctacgcccttatcgcggaggttgggtggtacagcttccggcggcgccacctcgccggcgtccttgggttcgtcaacgagaccaagcccagcgacatccccgtcgtcctcgattgggcggccagggacggctggtgcccggcgacggcggaggagaaggcgcggcggaagtacgcgtgcgtgagcggcaacagccactgcgtcaactcgagcaacggcatgggttactcgtgcagctgcaaccaaggctacgaaggcaacccttatcttgacaacggctgtcaaggtacgattctttttaccgatgagtacaaatggtcagtggctaacccagaataa</cdnaseq>

Protein Sequence

<aaseq>MESSSSVIFLGTGCSGALPDARCLIHPSTPPCPVCSHSLSLPPE RNPNYRCNTSLLIDYCQHDGIHKYILIDVGKTFREQVLRWFSHHKIPYVDSIILTHEH ADAVLGLDDVWVVQPSGCRNGLGKVPIFLTHFTMNSVAARFPYLLKNKLEEGDEGSQV IQLDWTIIEGDIDKPFVSSGLEFVPLPVMHGEDYVCLGFLFGRRSRIAYLSDVSRILP RTEHGRCWQLPPYSESVSSSSGVSSAAAAGRAISLPGCPDKCGDVSIPYPFGVGDRCA AVGLNPYFNITCDDAVRPPVPKLGDPGMEAEVLDITLERGEIRLTGFLSYVCYTSSNS SYASLPGGIFVGGTQLRVSPSRNQLTVIGCRALGLLVGGAHAGGSGDGDEYATGCYTY CASLNSTDADGAPCAGTGCCQAPISSDLAYVGGTFPSNWTNSGWRFNPCFYALIAEVG WYSFRRRHLAGVLGFVNETKPSDIPVVLDWAARDGWCPATAEEKARRKYACVSGNSHC VNSSNGMGYSCSCNQGYEGNPYLDNGCQGTILFTDEYKWSVANPE</aaseq>

Gene Sequence

<dnaseqindica>4787..5745#1965..2000#1313..1418#1076..1223#855..982#619..754#1..149#atggagtcgtcgtcgtcggtcatcttcctgggcaccggctgctccggcgcgctccccgacgcccggtgcctcatccacccgtccacgccgccgtgccccgtctgctcccactccctctccctcccgccggagcgaaaccccaattacaggtgcgctctttgctcgccgccgctgcagtccagtcaagctgcccgatctttgcatgatttcgatcctttctttctttttttctctcgttccgtcagacgatgccgttacagaagaattgctcgtttgcaaatagtgaaatttctcctgaattggccgacaatttctcgttaaatgttgtattagaattcagagcattctttcagtgctgttcaagtgttcagtagttcgtgctgcaatgacctcctctctgaactctgaagtattatttaccattgttatgcagtgctacagtgtgttgtttatctacgggaaaatttttaccaatccagtaatgctgttggtatgacttgaaatatgattccaaagtagttactgcatcaaaaaccacaatagaaatttgcattatgaagttatcatctcgatgtctaaacaatgccttcatacagcaacactcttgtctgcttttaggtgtaacacctccctcttgatagattactgccaacatgatggaatccataagtacattctaatcgatgtcggcaagacatttagagaacaagttcttcggtggttttctcaccacaagattccttatgttgattcggtgagatcttacttactgcactgtccattttcaatctattacaaatgatgatgatcaattcatatagatggcatgactgataaggttcagtgcattgcagattattctcactcatgaacacgcggatgctgtcttaggtcttgatgatgtttgggtggtacaaccaagtggttgtagaaatggcttgggcaaagttcctatttttctcacccatttcacaatgaacaggtcattctagaactcaaaatggactaatacctgatatcatattagccatcattaccatgtatgatatggtgacatcacctacgaattttacagtgttgcagcaagattcccctatttattgaaaaataagctggaggaaggtgatgaaggttcccaagtcattcaactcgactggacgataattgagggtgacatcgacaaaccatttgtatcatcaggattagagtttgtgcccctgccagtgagaaccacttgttgtgaatttgaagtgatgctttggtttctctgtgtttgttcgttgaagttgctaacatgctattatcttttcaggtcatgcatggagaggattatgtttgtttaggattcctatttggaaggagatccagaattgcatatttatctgatgtctcaagaattctacctagaactgagcatggtatgatttttactgtcctccatcgttcttcaaatattagaatgcttgccttttgtttttttagtgcaaacaatagaaaaggatccaactgtgtatatgtttttgttctcttgctaaacctgtatctcaaatttttttttctttgtgaaatattgaaaatggcataaacttaatactaggaatttcagctcatcaaaatctacaattttctcaagaccggagttggagcatctatcatcatgccaatgattaaatagcactaccatggctgaaatcatgcttaatccgtagacatatatgttttgggttcttttgaatgccttttggttgttctggttttattggaagacattgctgatgcactcttcccccgcagcaatttcgaagtctggtgccggacaacttgatcttcttatactagaaacgaacgagttgcacggggaggtaagcctgtgccatatgcttgtcgtctgaaacagcgtctttgctattctttcacgcaaaacatactgataatctgacacagacttcgccctctgtgaacagggagatgctggcagttgccaccttactctgagtcaggttactcttatcacacgttttaggcaccttatgatttttttaacattaattagtttggtaaaatttaatggtttaaactccatgtactttccatcaaaaccagcctagaactggataccatcagacaaagcaatattgacctagtatgaccttactattcaaccattcctttcaagctggttcatcccaatgttttcttttcctgatggcatacaaaaattttcagactcttaatgctgtcaagagaataagtcctaagagagctctgttgattggaatgaaccatgaattcgaacatcacaaagaaaatcagacgctggcagaatggtctagcaggtaagcatagttggtgaaatatttatgctcttcacttattttgtgaaagagatgttcaacttgtaaaattatgtgatcacagagaaggaataccagtacaactagctcacgatggcctgcgtgtgtttattgacctgtaatgaggtggatcttaggcttatatatagcacacaacacaactttcagagcatgtttttcaggtatgctctaataattacagtgaaatcattgtagaacatttcaggattataccctttgcttgtttcaaaaggaaaagaaagtttcacttgtgtaagaatttggtgattacttggtgctatttgttcatatctgcacctggatgtattacctctgttaatactgttttaccaaaataatgaactactcaaagagtaatcttggtttattgggattatgaggccctttgtcatcatatattttcactcgtctactcggctgccaacttgtctcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgcatatgcacgtcccttgtgcatggttagcaatgtggtgacttcgtcaatctttctaggatttgccggcccagtcttcgaaaatgttcataggggtacggtttgcgtgcgtctgttcataggggtgagtgcgcgtgtgttgtgacttgtgaatgtctgcgttgtaccgtgtaattctaaaaataaaaataaattatgaaattataatgtacaaataaaaaaaatatagtgttgcattcacctagactttggatctggtagtaaatgagaatgattcaaactgcgataagaatacagaatgatgaatgcaaagggttggtactgccaccgaatgagaagaatcctttatttttattgttttgattagaaactctactatttcgttcatgcggactttgtgtgtcaacttctaatgacggaactgattgaatacttaaaatatattatcacccaaggccactgaaggaagctatagagtttcacccgatttgcatttttcataacagaaggaaattgggaatctcgcactattatataatcatatactacatatattatttttcttcaagcatatattttgtatcgatgaggttattctgaaaggagcaaaattataatcccgtagtctggaaacttgaagcagaggatgtattgtgaaaatcgtataaacaacccaacattatgcaatatacagatcattaaggattaagtaatggaactattcaggccggatttatccattatctaacaagtaaaaagtaaaagaaactattcattcctttctcccagaacattgttacgatgatgtcaatatatgtgcgtgatatttttcaagtaaaaaaaatgtatctccaagaacattacataattattaagtaaaagatgttctcttaggtccttgagaaggtacaacagtatattataatattatctagtataatttgtgatattttttacctaaacaccaagaaggtttcacaaatatgaaaaatttaacactagaaaatgaaaatgaagtgccttacatttctcctcaaaagccttataaaagctaattaacttttacccgtcagttgttgtccagactgagtcaacgtaaatcttctttattatgaaccaagtcaaaaacgcaaaatatttaggagatacaaaatgatacaggcaacaaagttgcctcattctagttatgcattcgcttggcaattaaactacttcatcaaccaataaacgtgcacatccttttcacactgagctcacttcaggtgaacacatggatatagctcttcttttttttttctttttttttttgcgggggatatagctaaacagttgaagaacgccttcagtcaggaagaaatccataacagcatatatacttcaaaccgtttcttttttttccttaattggcttgtcatggtaattcaacttaatttgacttggttcacgattcaataattcgttaacacattaatttatgagaaaaaaaggtaaggaagttaggagaagtttgcatttttacaatggtaaggttgttttcatgatttgctcttgtaacttgacccgcacaattttaaccgccccattttattagctgtatcagtagagctctacctgatagttttctttagaaacaattgtacgatgattaattttatactttctcaaaacttctctgctatgtagttgacttacatttttacagctctacatatttcattctactatatattggcagcctaatcatacaaacgggactaaacctaagtcccagattataagcagtaaactgtaaaccagagatagtagaaagataagcactgtctcactgctaaccaggcaattaaccttcagcaattatgcaagaagcaccatcgactcgatttctcctgttcatcttctacctgactgcagtatcgtcgtcgtccggcgtctcgtcggcggcggcggccggacgcgccatatcgctgcctgggtgccccgacaagtgcggcgacgtctccatcccctacccgttcggcgtcggcgaccgctgcgccgccgtcggcctcaacccgtacttcaacatcacctgcgacgacgccgtgaggccaccggtcccgaagctgggcgaccctggcatggaggccgaggtcctcgacatcacgctggagcgcggcgagatccgcctcaccggcttcctcagctacgtctgctacacgtcgagcaacagctcgtacgccagcctcccgggcggcatcttcgtcggcggcacgcagctccgcgtctcgccgtcgcgcaaccagctcacggtgatcgggtgcagagctcttggcctgctggtcggcggcgcccacgcgggcggctccggcgacggcgacgagtacgccaccggctgctacacctactgcgccagcctcaacagcacggacgccgacggcgcgccctgcgccgggacggggtgctgccaggcgcccatctcgtcggacctcgcctacgtcggcgggacgttcccgagcaactggacgaacagcggttggcgcttcaacccgtgcttctacgcccttatcgcggaggttgggtggtacagcttccggcggcgccacctcgccggcgtccttgggttcgtcaacgagaccaagcccagcgacatccccgtcgtcctcgattgggcggccagggacggctggtgcccggcgacggcggaggagaaggcgcggcggaagtacgcgtgcgtgagcggcaacagccactgcgtcaactcgagcaacggcatgggttactcgtgcagctgcaaccaaggctacgaaggcaacccttatcttgacaacggctgtcaaggtacgattctttttaccgatgagtacaaatggtcagtggctaacccagaataa</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0643250, RefSeq:Os03g0643250