Os03g0644000

From RiceWiki
Revision as of 12:50, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0644000| Description = Autophagy protein Apg6 family protein| Version = NM_001057291.1 GI:115454310 GeneID:4333557| Length = 5698 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0644000

Description

Autophagy protein Apg6 family protein

Version

NM_001057291.1 GI:115454310 GeneID:4333557

Length

5698 bp

Definition

Oryza sativa Japonica Group Os03g0644000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:25595907..25601604

Sequence Coding Region

25596316..25596472,25596683..25597035,25597261..25597431,25597773..25597897,25598402..25598450
,25599132..25599290,25599428..25599513,25599958..25600029,25600487..25600636
,25600918..25601101

Expression

GEO Profiles:Os03g0644000

Genome Context

<gbrowseImage1> name=NC_008396:25595907..25601604 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:25595907..25601604 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagccccctgcatcctccgccgccgctgccggcgacaagggcggcggggtcgacccgtctctgccgcggttcaagtgccaggagtgccaacgcgcgctcgtcgtcgtcggcgtcgagtccttcaccgataagctccccgctcatgccgtctccggtatgaacgtgtcctctgttcagggcagcgttatgggtgctagcaggatggacaactcttatgtcgtgctatcgaagcaaaatagatcacatagccatggaattcccccacgcccgccaagcgcagggatcccgcgtgccgagccgaaccaaccaacaagagcaatggagggatcatatatagtgcttccacctgctgccgcttccatatacaagacatctgcctctgaaggaggtggtgcgcagttgtcaccaacaagtatgaaccccggtagccctttaccaggaaataattttcactctagcgtgactgtattaaaacgggcatttgagattgctacatcacaaacacagattgaacagccactctgtctggactgtatgaggttgctgtctgataaaatggagaaggaaattgaagatgttaatactgacaataaagcttatgaggcctgtcttcaacgtctggagcaggaaacctataacatcctcagtgaaactgactttcagaaggagagacaaaagattgaggaagaagaaaagaaacttaaagctgcaattgaggaagctgaaaagcaatattcagaaatttgttccgagatgaagtgccttgaaacaaaatctaaacagttcgaagaactggaagaaaggtattgccatgatctcaatagctttcagtttcagtggatatctcaccaggaagaaagagatgcggttttggccaagatagaagtttcgcaggttcatctagaattgttaaagcgtacaaatgttctcaatgatgcattctatatttcacatgatggggtgatcggaacaataaacaactttcgtcttggccgccttcctaatgtacaggtggagtgggatgagataaatgctgcttggggccaggctgctcttctgttgcataccatggctcagtacttcttcccaaaatttgaataccggatcaaaattcaccctatgggaagctatccaaaagttacagacatcaaccaaaatacatatgaactgttcggtcctgtgaatttattctggagtacccgatttgacaaagccatgacatggtttctgacttgcttgcaagaatttgctgattttgctgttagtttggataaagagaacaatgtaccacctgacaagtcattgaagctcccatataagattgaaggtgacaaagtagggagctatacaatcttcttaagtttcaataaacttgacaattggacaaaagcactaaaatacatgctgtgcaacttgaagtgggttctctactggtttatcggcaatacaagttttgccccaccctctggatctttacacgtagcacagtcttccaagggatga</cdnaseq>

Protein Sequence

<aaseq>MKPPASSAAAAGDKGGGVDPSLPRFKCQECQRALVVVGVESFTD KLPAHAVSGMNVSSVQGSVMGASRMDNSYVVLSKQNRSHSHGIPPRPPSAGIPRAEPN QPTRAMEGSYIVLPPAAASIYKTSASEGGGAQLSPTSMNPGSPLPGNNFHSSVTVLKR AFEIATSQTQIEQPLCLDCMRLLSDKMEKEIEDVNTDNKAYEACLQRLEQETYNILSE TDFQKERQKIEEEEKKLKAAIEEAEKQYSEICSEMKCLETKSKQFEELEERYCHDLNS FQFQWISHQEERDAVLAKIEVSQVHLELLKRTNVLNDAFYISHDGVIGTINNFRLGRL PNVQVEWDEINAAWGQAALLLHTMAQYFFPKFEYRIKIHPMGSYPKVTDINQNTYELF GPVNLFWSTRFDKAMTWFLTCLQEFADFAVSLDKENNVPPDKSLKLPYKIEGDKVGSY TIFLSFNKLDNWTKALKYMLCNLKWVLYWFIGNTSFAPPSGSLHVAQSSKG</aaseq>

Gene Sequence

<dnaseqindica>410..566#777..1129#1355..1525#1867..1991#2496..2544#3226..3384#3522..3607#4052..4123#4581..4730#5012..5195#acacgcacgctacctctctctctctcgactcccgagcaggcgactcctccctccccggcgattccgccgctccgaccgccgtctctccgcgccgcgcacgtgagccccccgtcgccttcctcgcacggactctgcccccgccggaatctcatctcctacgcctcaaacccccaccccgcgacgccgcctagccgcgattttcctgcggggtactccaccgcccctggaggctggagccgtgctctccggatcggcgttggattggtgagcccgcgtgctggagctcgtgagctgtctatagggttttgattggagggattttcgtttgatccgttgtttctggtgaggtgaatgatgccggattcgtggatgcaggtagcgctcgcgtcctgctctgtcgggcggcgatatgaagccccctgcatcctccgccgccgctgccggcgacaagggcggcggggtcgacccgtctctgccgcggttcaagtgccaggagtgccaacgcgcgctcgtcgtcgtcggcgtcgagtccttcaccgataagctccccgctcatgccgtctccggtaacccttgcctcctcaaccgattagctcccttttccctttgttggctcgtcgtaattccatcgactcgaatcggaatcgataggtagaaaatttattcggttttggtatggtattagcatcgcatgagccaggaaattggggcatgattggttgaaaaatgctaggaattgctgcactatttgttacaagagctttttatcaatgcaggtatgaacgtgtcctctgttcagggcagcgttatgggtgctagcaggatggacaactcttatgtcgtgctatcgaagcaaaatagatcacatagccatggaattcccccacgcccgccaagcgcagggatcccgcgtgccgagccgaaccaaccaacaagagcaatggagggatcatatatagtgcttccacctgctgccgcttccatatacaagacatctgcctctgaaggaggtggtgcgcagttgtcaccaacaagtatgaaccccggtagccctttaccaggaaataattttcactctagcgtgactgtattaaaacgggcatttgagattgctacatcacaaacacaggtactacaatgacttctgtaagatgcctctgtattgaatgagaacacgtgcttttgccatttctgtcattttacctttgtttcccatttattagcttgtgcagttgctagttattgcatcagatttgcatgtttttgctactatatgttgagggttcattgccatctgttagtattttgagaggaacaatgtcaagaccgctgataatctggaatatacttgtagattgaacagccactctgtctggactgtatgaggttgctgtctgataaaatggagaaggaaattgaagatgttaatactgacaataaagcttatgaggcctgtcttcaacgtctggagcaggaaacctataacatcctcagtgaaactgactttcagaaggagagacaaaaggtggtaatctttcttacatatttatggtcatatcgtgattaatgagatcctaaagtgcatgacagcctgctgctttggacaaaaataagtaaggcagaagtttcttttgatagatgaaacacataggtagtgagcaatgttttaaatgaacaaataattcccttgtaacttctctgtaagagaattcttgcccacttataaaaatgttgaagtgcaacagttcctgaagaagttgcctacttgacctttcttatgtgaaaaaaaaaagaataagcacctctgactggtcagtggccatgattttcatggaactaaatgtattatgtgttctgccatttcagattgaggaagaagaaaagaaacttaaagctgcaattgaggaagctgaaaagcaatattcagaaatttgttccgagatgaagtgccttgaaacaaaatctaaacagttcgaagaactggaagaaaggttaaaattttaattaaccttttcattttgtcctttcttgaatgttcttattattaactctgaagtttctctacaagaatcagtgatatagagtcttcagtgatttataatttgcttttgggtgtgcatgtgcatacttgcaggaggctctcgactcttctctgtctctcttttttttctgatgagtcgtaacattgttataggctatgaatacaactgttatattgaaaacattaatgtgtacctatatttgtcacctgaaactagacattattcaacagagtgtcagtgtgctattcaatataattggcaattcgacatcagaaaataggagtatcattatttgggaataataacataatacatcccacacatgttttgttatatcgctacaacaattgctagtggttttgtgcaatctgaaatatttggttggctcatgttatttgtgaagttctacagttacttgttaaacaaatctgatttatcatatttttgaaacaggtattgccatgatctcaatagctttcagtttcagtggatatctcaccaggtaaatacctactacaggccctataaatatttacttagcactattttcttgatgtcatgttttgacttcttgttagcacaaaaacctaaaaacattgttattttctagcagaacatagaaacaaccaaatgcactatattccagatttgtcatatactcaatagctaaagctatataaactaagtctatagctgccatgttttgtacttttgttggtataaataaacctctttaaaaattaacattgtttgtgaataatgctctgtgtctgtactatcatgttttgcgctgccttcataatagaaaataactagctgaatgcccatgccttgctacgttatactatagtattgcctaaaataaataaaaatatattttacatgaaatgtgttgcccatccttttgttataaggaatattcaccttaatttgattttatatgtggctatccatttagatttggttgtcttttaacatgaagacgctcaaggagtaatttataaaattttcaatgggactaagtgggttggcagattcactgccatcaccagttcaccactaccttctattataggagcatagatattataatatgtattggttccttatacataagcttcataatgtctgggctgtttgcaagcatttgcctgtcaataactcatttttttgtcactttcaggaagaaagagatgcggttttggccaagatagaagtttcgcaggttcatctagaattgttaaagcgtacaaatgttctcaatgatgcattctatatttcacatgatggggtgatcggaacaataaacaactttcgtcttggccgccttcctaatgtacaggtaattatgcaaaatgtgcagatatcacgtccattcactatcttttagtgctttccttgaattctattcaagatgtacatggaatgttcatgttgatcctttgtgttaatgtaacaactgtgttactcttttcttaggtggagtgggatgagataaatgctgcttggggccaggctgctcttctgttgcataccatggctcagtacttcttcccaaaatttgagtatcctttatacagtgacattatttttgctacagtttatttgctggtcattctcttgagaagtaattcatacatggcatttacctccatcaactagttatacaacattacgacatacatgtttcagtgcattttagttgttactccatgtagttgtttgctttgttctttctgtatggctctgtgttcaaaatatgtttattctatatgaatcgagcttgtctatatgttataacaagttggaaagatagtgttggatggttattggttagggtgaatgcataattgcatattatagtcttttattggattgcatgatgtgtttttagcagatcttctctcataagtagcattaaaaatgtgtatgtacattgaaaaggacaaatcctaatactctacaattgttgacgaaatgataattgtgctacctgaacatttatctagataccggatcaaaattcaccctatgggaagctatccaaaagttacagacatcaaccaaaatacatatgaactgtaagcttcctgctggaaattgtactccctttgttattctcttttcaaaaacttgtaaaatattggtactgtaatattccttattttcataatgtatattatatttttttctgaagaacaaattctgctgctagtaaggaatctaggatgtccctcatgaaataggcaacttatgcttattttgtcatacctgatcactttcctggtggtaataattttcttttacattggttaacacatccacaaacttttaaataaatcatgttgtcaattcgctttcactgagcacatgttatgttgagtggtgcaattatttgggactggtataaaatcatcatttggcggccgttctaattttggaaaattcactctgggggtttactttgtatatttattcttatcttgcacagtggaattacattataccaagttaataggctgcactgttaatgttcaggttcggtcctgtgaatttattctggagtacccgatttgacaaagccatgacatggtttctgacttgcttgcaagaatttgctgattttgctgttagtttggataaagagaacaatgtaccacctgacaagtcattgaagctcccatataagtaagttttattgcaactttcctatactatgatctcttagtatatgaattgcatggttcatgctaagacacaaattagccatcattgaacatcacctaagtgaaatcaatgtaaatactttaggttttactagtgataaaacaaaataattaagacaggttagtaagttatgcggttatggtttctcttttgttcatatgactagtattttgacagttggatatatcttatatacacaacgttgcttgtgccgctctttacttgaataacttcgcttgcaggattgaaggtgacaaagtagggagctatacaatcttcttaagtttcaataaacttgacaattggacaaaagcactaaaatacatgctgtgcaacttgaagtgggttctctactggtttatcggcaatacaagttttgccccaccctctggatctttacacgtagcacagtcttccaagggatgaagtcactggcttgtgatgctgattataagcgcatattggcaaatggcattgactaggctcgtttgtaatttacagtagtacatacagctagttttttttttccttttggccgccttcagttgtacttcctccgtttcacaatgtaagtcatcatagcatttcccatatttataatgatgttaatgaatctatatagatatatatgtctagatttattaacgtcaatatgaatataggaaatgctagaatgacttacattgtgaaacggggggagtatatatggttgaaatctgcacaggagaaattgcagatgatggtgcaactcagcttatagtcggcttgatcattattcatgtaattatttagccatgtgtgacagaaaatgcgagtgatacgagatcctagagcaattcatgcagctctggttaggtgagtttgtgatggtgcaatcaacagcatatccaatcaacattaagatttataagagatgaaatgtcttcagc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0644000, RefSeq:Os03g0644000