Os03g0657000

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Revision as of 12:51, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0657000| Description = TATA-binding protein TBP2| Version = NM_001057347.1 GI:115454422 GeneID:4333619| Length = 4417 bp| Definition = Ory...")
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Gene Name

Os03g0657000

Description

TATA-binding protein TBP2

Version

NM_001057347.1 GI:115454422 GeneID:4333619

Length

4417 bp

Definition

Oryza sativa Japonica Group Os03g0657000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:26394921..26399337

Sequence Coding Region

26395103..26395188,26396166..26396253,26396861..26396932,26397856..26397906,26397981..26398025
,26398124..26398216,26398302..26398403,26398478..26398551

Expression

GEO Profiles:Os03g0657000

Genome Context

<gbrowseImage1> name=NC_008396:26394921..26399337 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:26394921..26399337 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggaggcggcagcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatccccacgctccaaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagctcgcaatgcagaatataatccaaagcgttttgctgcggttatcatgagaataagagaaccaaaaactacagctctgatatttgcatcgggtaaaatggtctgtactggggcaaagagtgaacaacaatccaagcttgcagcaagaaagtacgctcgtattatccagaagcttggctttcctgctaaattcaaggatttcaagattcagaacattgttggctcttgtgatgttaaatttccaatcaggctggagggacttgcatattctcatggtgctttctcaagttatgagccagaactctttcctggtctgatatatcggatgaagcaaccaaagattgttcttctgatttttgtttcaggcaagattgttttgaccggagcaaaggtgagggatgagacgtataccgcctttgagaacatataccctgtgctaacggagttcagaaaagtccagcagtga</cdnaseq>

Protein Sequence

<aaseq>MAAEAAAALEGSEPVDLAKHPSGIIPTLQNIVSTVNLDCKLDLK AIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR IIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQ PKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKVQQ</aaseq>

Gene Sequence

<dnaseqindica>183..268#1246..1333#1941..2012#2936..2986#3061..3105#3204..3296#3382..3483#3558..3631#gcgagagcgcatagataaccctagcctcccccttcctcttcctctcctccttctctcgatctctataaaagacctcggatttcgaattcctccgccccgcgcgcgcgcgccacctcccccacgcccgtcgcgcccttttttttgggggtgggattcgcctggtcaagtgccatcgtcggatcatggcggcggaggcggcagcggcgctggaggggagcgagcccgtggacctggccaagcacccctccggcatcatccccacgctccagtaagtcccggatctgcgcggatctgcgggattcctgtgggtggggtgagagattcggtccgcggggggatttggggtccttttagcttgttgtgtgttgagggggggggggggggggttgaggtggaatggaatggttgattcgcggcgcgaggttttgttctttggggggattgttgcaaatcgtgggaaaggtggtagccttgggttggattttttttttttggggggggggtttaatatgtagcgtttgaaagggggggcgatctgagatctgcgaatccgggtggagaagaaagaggatgtgctgtgctgtgctgtgatagatccattgtccggtctttcaactcttttagctaccatatagtttatatgatatacaggttgaatccgctggtcagcttttttttttttggggggggggggaatcagataataatcaatcatgcatctgattttagatttaatgctttctgctcacggttttcaatattagaggggttatatctgtagagagtttaggccttagggttcttatggcatacagttcacatgagtcactgtttgtttttagacagctcgaagttctaaacaacacatttaggctttattaatccatgtatcggccaatacgggcaagcacggccgtttattagcatgatgtacttgctggtgtgctctggaacgtgtggctgcctgcgttgctaccaagcatgtacatttgcatgctggtgtgcgctgctaaaaggttggacatgcttatgttgctgcctgtcatagtatacttgttgccatgcattctcagaagtgcgcatgtctgttttgctgccttgctgggttgtttatgttgcagtgttgggatcatagctgctgtctgcatgtgtcccactctgtttaagcttatgattcttcctttggttacactcatcagtgaaattgtggtccttattatgcattctcttttattttgatggcagaaacatcgtatcgacggtcaatttggattgcaaattagacctcaaagctatagctttgcaagctcgcaatgcagaatataatccaaaggtattatgatggcttcggtgtgttctagtgtctctgttttggctcaaaaggatatcttcattgcatgttaaaatgataccaatgttattcttagtagcatgtaatatgtagacaaggtccatatattcctatggtctgttcctagagtgatatttcctttgtgtataacataagtgttagtgcaattttagatgtcagtatggataaatccatagttgacagtcgagttttgtaaggcaagtctcagttaagatagtgaagacagcttgtcccacagataaacaaattgctctacaaataagattataaaaattactctttttagtgctttgggctttttatctgtgctgcatgtaccagacgcagcacgaggtattgggagattttgtaactatatgtaatatcgtaagctaaatctaggtgtaccatgtttgctttaataataaatacattttggaaggaacagacatagcgcacactggggttataaacatctctatctagtatcttagattgatttacactatgtcagtggcgcactatataatttcatactcatttgctgtaatttatgttttagtttgctaattcctcctttcataaacagcgttttgctgcggttatcatgagaataagagaaccaaaaactacagctctgatatttgcatcgggtaaaatggtatggttcaacttcttgtaccgtgactgcaaatgttctgttttgttcatctgcttattgacttgtgaattgttttgttatctgtccaatggccagctgttgatcttgtagctattataatgcatattgattcatgaactgtttttgctgctgtgtaactgcttttgctattagcatactatctttttagtttttatttacttgttaacagctatcacatccctacctttatccgtgccgcattgcagcctgtatttcaatgttgaatctgtgaatttacttttgctctgatttttctgacatgtttgctgttgcattggtgtgtcaatagctatcacatccatatctgatccaagcagcctgtagttcaatgttgaatctgtaaatttaattttgctctgagtttatgaaatgtttgctgttgcattgctgtgtcatatagtaataactgcatgagtattgttctttctgtgaatgtatagtttgtccttgttaacttttttatggctttaaagcataataggaattgtttattcacaataaattgaacctaacatatttatttgttgaaggataatcagcaatagcacatcacatgcttcctgtctggtcaatatcttcatttttcttgaaaatcacttgaattttcttttggttcaatatctccatccaaataactttacctgttgaagccttaggcttactagtatgtcgtatggggcctgtctgttaggcagtgaacttaaagaaagggttgccatgggtttgacgcaccaatttgttgcatcttttcttctcttttttcctttgtataaaaaaaacaaatatggctgttaaccaaaatttctcagtgtccaccgtgatgtctggcatctatggttaaattagaggtctgtttataaatcttttgtgtcctataccaggtctgtactggggcaaagagtgaacaacaatccaagcttgcagcaagaaaggtatgagcggtagtttttattttattttgctatatctgtctctctgaagtcttaacactagtttttatcaccagtacgctcgtattatccagaagcttggctttcctgctaaattcaaggtaactatttcaagcttgcttgattttcatctgtgcatgtgcctaccaaatacattctgtaattgtacctaactgtttaactcattgcactataccaggatttcaagattcagaacattgttggctcttgtgatgttaaatttccaatcaggctggagggacttgcatattctcatggtgctttctcaagtgtaagttgagtccttgcatgcctttttaggacgcctttcacatttgttatgttgttcttatgtcctgtgccttttgtgttaacagtatgagccagaactctttcctggtctgatatatcggatgaagcaaccaaagattgttcttctgatttttgtttcaggcaagattgttttgaccggagcaaaggttagcagcctttccttttgtatattcttgattgcctattcctttttgtatgtctgaatatactgtctttataggtgagggatgagacgtataccgcctttgagaacatataccctgtgctaacggagttcagaaaagtccagcagtggtatgtctttattttgttatttaagtatgcagtgtgctgtacaaatatcggaacaatacatgaagtaggaatgatagtggataattgcaacttatctgtcttttgttatattatatatgtgagtggaccatgggcatatactaaattgcaatatgttgcatcttttaatattgttactggtctatggttgtaaactatcctttgtagtgtaagcacctaataaatctaaactttccaattagaatccagatggtttagcagaaactgaaggcacaatttatctcaagaaaaagattttaatttaccactaccttgatcttagacaggatatactgatggttttagatgccatgaagcaataccgcgtgatatactgatggtttcttgctccttccaatttgcagaaaacttatggaatacacaagtacaagcttccttgagattttgctgcctagtgactgctaatcttaactgtacatatggtctggaggagcgtatagcatcttgtaatttatgtgagcccctcgatgcacgagtgttgtagacttgttgtagtaggcttgtagcttgggtgactgagagacttgagtatcgcgttcagtcgaacgaggtggagacgtggagttatcgtactttagcccgtgctgatttttttcccttcacaaatagatctgtagcgaaacattttattacagaaatgggcggctaacttttaacaaacagaacatatgtactgtggatgcgttgcgttttacagtagaatgtcatggactgtttggatggtgg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0657000, RefSeq:Os03g0657000