Os03g0659900

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Revision as of 12:51, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0659900| Description = Similar to S3 self-incompatibility locus-linked pollen 3.15 protein| Version = NM_001057357.1 GI:115454442 GeneID:433...")
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Gene Name

Os03g0659900

Description

Similar to S3 self-incompatibility locus-linked pollen 3.15 protein

Version

NM_001057357.1 GI:115454442 GeneID:4333629

Length

7502 bp

Definition

Oryza sativa Japonica Group Os03g0659900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:26611056..26618557

Sequence Coding Region

26611534..26611995,26612340..26612416,26612512..26612603,26612901..26613007,26613116..26613201
,26613315..26613431,26613659..26613742,26613854..26613933,26615340..26615434
,26615629..26615690,26615823..26615904,26616344..26616766,26616968..26617030
,26618127..26618291

Expression

GEO Profiles:Os03g0659900

Genome Context

<gbrowseImage1> name=NC_008396:26611056..26618557 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:26611056..26618557 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatccggagcagacgttcctgcgggtgcacgcgcggctgtccgggatgctgtcgcagctgctcacgccgcggatccgcctcgcgctcgagtacctctacctcgccggcgccgtcgcgctcttctgcctgctcgtcgtcatgcacaccaacttcgtgcagcagcctggctgttcaagcgagttttctgggattgaatttggtgaagcgcaacttgtccaaatcaagataatcagtggtggactatgggtcagcaaaggtgcatcctacattatggatcttcagaacctggggcgttcagctgagaaaattctagaggttaatggtgataggttcaatattttggcatctaagttttggtcaacttgggttggtcctggagctagaaggagcaaaattatgttcagaacttggaagggagacaaggaatttgaaccacaaccagagaatgcagctgacacagctattaccgcaaccacttcaggagtatcggattcgaagacaactgtggagggttctgcataccatccattatccgcaaaagaatcatttaaagcagcagttatgtatttattcagaaagtggtactttcgtgttgtctcgttctggaggaatataaaacaactttcagataatacttttcaattaatgttcagatcaaactggaatgacttcctccataccatcaagggtattcaattaccaagcgtggatcatcttgtttcaacaatagtacagtggtttgagagacgaagcaaagcatttgaacctacctatttatatggtgtggagaagggatatttcttgctttcagaaggggccaaagttcgtcatggtgttcggactataaatatcacaatttctgctcgaaatccttgctttggaaataggtggcaacagcttttaataaacagcattgttggctatgacactatacttacaaacagcttagtgaactcccctggtcatggctatttatacaactttcaaacaaaggagctttatgatctcagttacggacatgaaccaccagcaggtccaacaagatttggagattattttgtgacgaaatgtggtgtacttttaatgtcactctttgtttttttcacaaccaccatgtctgtttcatttaccctgagagagacgcaatcccgcatgcttaggttcacagtgcagcttcaacatcatgcacgccaccaactccccacatttcaactgatatttgtccatgttatcgaatcattggtttttgttccgataatgattgggatcctcttttttctatttgagttctatgatgatcagttgcttgcatttctagttttgactcttgtatggttgtgtgagctatttacgatgatcagtgtgaggacatctatatcaatgcagttcttcccgcgctttttcttgctgtatttcttggttttccacatttacttcttctcgtacacatatggcttctcctacctggccttttctgccaccgcggcgttcatgcaacatctaattttatatttttggaaccgcttcgaggtgccagcccttcagagattcattagaagccgagctcaccttcaccaacaaacgggtgttcagatcacatcctcaaccatctatacatcaacattacatatagcaagggtaaatatgagggaccctggcgcaatgaatgagggccttggtgctgctcgtgaagcagatgccctgctggttccggatgagcctaacaggaaccaacaagagggtcaaccaattgaaaatgcagagttagtggccaacaatcctctgcactatcaagatcaaaaccctcagcaacctggcaatgctccggcaggctctggctccttgaatccatttggttcccttttattgtggttgctaggaggcggagcttctgatggcatagtatctttcttctctatgtttagagatgtccgtgatcatggtcaagattacactgatccacctcgaaatgaaaatggtcaggtaacatag</cdnaseq>

Protein Sequence

<aaseq>MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCL LVVMHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMDLQNLGRSAE KILEVNGDRFNILASKFWSTWVGPGARRSKIMFRTWKGDKEFEPQPENAADTAITATT SGVSDSKTTVEGSAYHPLSAKESFKAAVMYLFRKWYFRVVSFWRNIKQLSDNTFQLMF RSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKAFEPTYLYGVEKGYFLLSEGAKV RHGVRTINITISARNPCFGNRWQQLLINSIVGYDTILTNSLVNSPGHGYLYNFQTKEL YDLSYGHEPPAGPTRFGDYFVTKCGVLLMSLFVFFTTTMSVSFTLRETQSRMLRFTVQ LQHHARHQLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLTLVWLCEL FTMISVRTSISMQFFPRFFLLYFLVFHIYFFSYTYGFSYLAFSATAAFMQHLILYFWN RFEVPALQRFIRSRAHLHQQTGVQITSSTIYTSTLHIARVNMRDPGAMNEGLGAAREA DALLVPDEPNRNQQEGQPIENAELVANNPLHYQDQNPQQPGNAPAGSGSLNPFGSLLL WLLGGGASDGIVSFFSMFRDVRDHGQDYTDPPRNENGQVT</aaseq>

Gene Sequence

<dnaseqindica>6563..7024#6142..6218#5955..6046#5551..5657#5357..5442#5127..5243#4816..4899#4625..4704#3124..3218#2868..2929#2654..2735#1792..2214#1528..1590#267..431#gagataatcgcaggctcgcagtgctcgtgcgacgacagagaggcgaggaacagagagaggggggaaagcgaaacgtacaaattcaaaatcactccccaatttcccccgaataattccaccgtcgcctaaagccagtttcatcgggaacgcctcgaattttccgatccctaggcgggcgggcgggggaggtggagtgcccgcggcgcggcgcggcggtggttagggtttggggctcgtcggcgtcggcgagggcggaggggggggggatggatccggagcagacgttcctgcgggtgcacgcgcggctgtccgggatgctgtcgcagctgctcacgccgcggatccgcctcgcgctcgagtacctctacctcgccggcgccgtcgcgctcttctgcctgctcgtcgtcatgcacaccaacttcgtgcagcaggtgagcatcccgcccctcctcgcccttcttcgtcttctgcccgtgcttgtactgcgcgcgttcgtgctagcctgggtgttgcgaattttgtgcgaactgccctggcctgggttcgccaatgttgtcaattcgacgccctggtaaaaaattgagcaagcctgaggctagtatcaaagttacctgtgtgcgcactgcgcagtagttgctggatttctctagtttggctactgaataggaaacacttataattttagcaactttttaagttgtaatgtaacagtaatttcgattagtgatcccctgaccatcctggcttctggcttagtcctgcagaggtacttacaataccgcattgtttcagatttggtgtatgctagttttttgttcttctctgcaactgcttgttctggaatagtcccacgctactgtaaaactatgatatgccagctattcctctattcattgctcccccagaaacagcatgccaaatttgcatttggtttgcctaatatgaaatctttaagatgatttttttttcttcgaatgtgtatgaatatgcttatggtttctgttatagtgtgaacatatcgagatgaaaaagcatgagggtattgctacgtaagctaactttgtagtagtgatcccctcctattctggtaaatactactgcacttcaaatgaacgagattatatactctctaggaatgtgttagtgttaacgtagattgcatccagtttgacgtgtttgttgatccttatgcaattgatttagtaccacgtggaaactagaacaaaatagaagtttgataaaccattccgttccatgtcttaagtatactgcgttgtgcacacatcataacttacttgtaagtgcatgcaactacaacccttaaatctcctaaaaagtatcattcatatatatttacatgctgaaagctatctcctgttcaacttagaaacacaatatcctggatttgaaataaagaaaaatgccaaacctttttatctggttgtttctttttcctttaccttgttccataatagtctagtgtgcatatgtagcctcacaactttgagttacctttttcatgtgaagcctggctgttcaagcgagttttctgggattgaatttggtgaagcgcaacttgtccaaatcaaggtacacattgctgcttgtcactattttgcatttcttgctgttagactctttgctattctgtgaagtgtgtcgagcattttctcctttttgcacttgggactcaagtgtgataatattccttatgttttttcccttgcttgcaatactagctcatgtttcctattggtatgacttgtttgttccctgcctttaaatttgtagataatcagtggtggactatgggtcagcaaaggtgcatcctacattatggatcttcagaacctggggcgttcagctgagaaaattctagaggttaatggtgataggttcaatattttggcatctaagttttggtcaacttgggttggtcctggagctagaaggagcaaaattatgttcagaacttggaagggagacaaggaatttgaaccacaaccagagaatgcagctgacacagctattaccgcaaccacttcaggagtatcggattcgaagacaactgtggagggttctgcataccatccattatccgcaaaagaatcatttaaagcagcagttatgtatttattcagaaagtggtactttcgtgttgtctcgttctggaggaatataaaacaactttcagataatacttttcaattaatggtaagaagttgattgttatcatttcagcattcatgttccctttatgttactctggtattacaaaagattcttgtatagttggacctgggagaatcatttatgcgggtaatggagtagtagttagtccatgtggttgcttggcgcatgtcaccttgatatctaacttgctgtgtgaggaacacttggagaattgtggactagtagtattgatttgtcaacatatgtcttactcatataaatgatattcatcaagttttggattaaggaatgtttgaatgccatgcagtgaaataacatttattttgatcaagttactctttcatgattcgtgtgatgctgatttttgtgctttttattatctgtatcacttaattagttaaacaaagtaacatgcactcatttaccgagggttattttttcttgattattttaacaacagttcagatcaaactggaatgacttcctccataccatcaagggtattcaattaccaagcgtggatcatcttgtttcaacaataggtatgttgtctggcagtaaactggtcatatgatctagtggtgcctatatgacttttcttatctttgccctttgctgtcaactcacaagggtctcattttctctaacttctcgtggtatgttgtttattacagtacagtggtttgagagacgaagcaaagcatttgaacctacctatttatatggtgtggagaaggtaaggttcattttggcatattgttatcacctattcaacttaattatgtttgttctagtatgttgttaagttgcttgattacttctttatgaactccctagcaaagtaagaatcaacttttgccagaaatgactggagaattcaactatcactcacttcaagaactctcttatatgttgccttctttcctgcagggatatttcttgctttcagaaggggccaaagttcgtcatggtgttcggactataaatatcacaatttctgctcgaaatccttgctttggaaataggtcattatcgagtacttgctcctcataatgggcatatcacactagatgtgtctccaaaagtttccacttgacatctttctacttcatgctacttagattagattctaacttttatgtcctgattctgcccaaaagttcatgtttgtgtaattcattgctctggcaagtctacttgtttgatgccattcaaagttcatgagttcctttaaatgcattggaagctgtcattccaccatatgccatcgaaccaaatttttttgccctcttttgccatccacgtcgctcttccgttagctagcaacaatcacagctaggaacattatcattttcttgtgataatggtgaaattactctttgcgcatagattcagagagttcctcccaaattggatgcgaaagctggggcctcaacatcactgctcccttcacctagtgaggctaggttatgatggcgtgaaccgcatggtggattggcagctcacttcccacctctgttgaactggcagcttagcaaggccattctatgtgtggtatggctagataccagtgcttgctttgttttgttatgtctaaagagaggagagagagagagagagtttgttgggggggggggaggggggttgccaggaggagcacgggcaccgtatgtacgcctgctgcagactggggttcatttccgtgcccatgaagaaaaaaaatggattcagattgctgcataccacacatgcttgcatctgctgtgatgccatgacagatggtatggtggtgctgtcctcgccttccatgcctggttgtgtgctgtggggcaatgagatcgagaaagcatgtgcaaccgggggagcagttgcatgggaggtaggcgcagtgaagtggcgtgaaagaatggaagaggaaggagacaagttgaagaagatatggagggcccaatggtcatcttaccgcccatgtaacagtttgctaacattaggatgatgagaatggcaaaaaaaaaaaaggcaagagaagtttaggcattggtgaatggaacaataatttcgacatggcatattaggaaacaaactcataaactttggatggcgtgtaaggactttggatggcatgcaaggaattttctcattttgtttattgatctttgttttatattgctcttgtacccaaatagttggaacatttactgagtttcaaagagctgcataaaaattctagcgttacaaatatggaatatctaattgctacttaaaaatctgtcatttatattgagaacttaaacaagattttgcattcgttctgtcttctttcattttgcttctgtagtgggtatctgcagaatgtgataatgctccactgttctttcatgcccaccgctatgttcttatgctatccaatctctcttttttaacctttcaggtggcaacagcttttaataaacagcattgttggctatgacactatacttacaaacagcttagtgaactcccctggtcatggtatgcttctgatgtgattttgcttttggtacttttaactatcaggatgttctatgcaactgtcgcaaacttagttagctcacatattttgtactttggtttgatatgcaggctatttatacaactttcaaacaaaggagctttatgatctcagttacggacatgaaccaccagcaggtccaacaagatttggaggtttgtatagtgctgattttacaaaatttgccatcccaaatatgttcacctgaatgactgcacttttataatgtgttcagctattagtggttttaatgctttataaatttgtaccagatgattccaacagcttacatgccacctgataattctattttgttgcctttcatatcttattttcatttctgcgtatttaaatcttatctattgcaacttttgtggtgcagattattttgtgacgaaatgtggtgtacttttaatgtcactctttgtttttttcacaaccaccatgtctgtttcatttaccctgagagagacgcaatcccgcatgcttaggttcacaggtttgtgcttattgctttacgttgtttcttggcctgctagatgctcaacttgttattatgatattatcttatggtaataaataatattttgttttcttcattgaaaatttcagtgcagcttcaacatcatgcacgccaccaactccccacatttcaactgatatttgtccatgttatcgaatcattggtttttgttccggtatgatattttttttccttaatgagctgaaaattttgtggctgtttagatgtatctactcaacagatttctcatatcttactaatttctttgttgtgatcattgcagataatgattgggatcctcttttttctatttgagttctatgatgatcagttgcttgcatttctagttttgactcttgtatggttgtgtgagctatttacgatgatcaggtactgtttccatatacatattgctggaatgctttactatttcgaggaaatactattttaatcatgtgagatttctgtgctgtgaagcgtctgtcctactaacttattcatgtgaaattatgaggaaacaaacagggtttagtcatatgagagagcaattagattagaatagtaggcacttgagcataatataggtgcatttaacatttgcaactttcaagcatgcattatcagaattgttgtcatgcatagcaaattcggtctgtctgaatttactgaattttgtgtcctttgcagtgtgaggacatctatatcaatgcagttcttcccgcgctttttcttgctgtatttcttggttttccacatttacttcttctcgtacacatatggtatgactacatatgtctttttggtgacctatattggcaagaaactactggaatatcctatcgatatatgacttgcatatttctgtatttatcaggcttctcctacctggccttttctgccaccgcggcgttcatgcaacatctaattttatatttttggaaccgcttcgaggtatgctaatatgcatttttacctgtgtatttcctgttctttattttggacttatcagtcattactgcttgtttattgctttggcctgcaatttttttttatattttcccctttgatattaggccatttctaatttctgaacactgcttaggatttagtgctagccttgctttcatcttcatttattaaactggaatgatcacctgaacttggtcaattcactgaggaaatagattagggttcacgcaagtaggggacaaattgtatatttaatgcatgtttaacagcaaaacaaaaaaaaagtccatgtccccattgtatttacttggcttgtgttgctttaggtgccagcccttcagagattcattagaagccgagctcaccttcaccaacaaacgggtgttcagatcacatcctcaaccatctatacatcaacattacatatagcaagggtaaatatgagggaccctggcgcaatgaatgagggccttggtgctgctcgtgaagcagatgccctgctggttccggatgagcctaacaggaaccaacaagagggtcaaccaattgaaaatgcagagttagtggccaacaatcctctgcactatcaagatcaaaaccctcagcaacctggcaatgctccggcaggctctggctccttgaatccatttggttcccttttattgtggttgctaggaggcggagcttctgatggcatagtatctttcttctctatgtttagagatgtccgtgatcatggtcaagattacactgatccacctcgaaatgaaaatggtcaggtaacatagaaaatataggaaggaaaacagaagggaattgcagacgaagaacactggtggagggcggttgggcgaaagttgcctatgttattaagcaagctgatatgttgcccgctccaccatcaaaggataatgacgaatatgcattgcagacttgtgtcggctgaacataccgcgttaagctgcagaatctgttaatttcttttctttttcgttgttgagtaaggttgctgaattgtacctactcatgacatgtgtacattccctaccgtctgaatgggcaagcccggcctattcttgtacagaaatgttcttcagctcatctcattttgctttttctgttgaaatcttttgtaccctatataggttggaactgcaacatgcagtattgcaggcttgcgctgcgctcctgtgtgttctacaaaagaattgtgtagcttgtcaatgcaattttgtgctgacaaattatattcgatttggatttgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0659900, RefSeq:Os03g0659900