Os10g0337500

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Revision as of 08:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0337500| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001070910.1 GI:115481563 GeneID:4348347| Length = 573...")
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Gene Name

Os10g0337500

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001070910.1 GI:115481563 GeneID:4348347

Length

5738 bp

Definition

Oryza sativa Japonica Group Os10g0337500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:9966869..9972606

Sequence Coding Region

9967203..9967244,9967339..9967452,9968230..9968601,9969040..9969108,9969210..9969281
,9969526..9969654,9970146..9970226,9971078..9971263,9971591..9972316

Expression

GEO Profiles:Os10g0337500

Genome Context

<gbrowseImage1> name=NC_008403:9966869..9972606 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:9966869..9972606 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggaggcatgggtggcagctaccttaccaccctcttcaggtggtggcgatagcggtttttctggcactgggttttgcgttctatgtgttctttgtgccatttgtggggaggagtgagctccagtatgtgctcatgggtctctacactccactgattacttgtgttgtcacattatacatatggtgtgcagcaactaatcctggtgatccaggcatttttaaagcaaagaaacatccaaaattaggcaaggatggaaagcaaatacaagaaatttcagagcacgaatcatgccagggaggaaagtcgttcagcgatggctgtagcattgttaataacagtgagagattaagcaatatgtttgaagggaatgattcatcttctcggcctgggttacatggagttctttgcttgatatgcaacccattcttctgcttatggaaaagattctttcactcagatgaccaatcttcggaacagcacatgagcgaagaaggcatgttcttttgcagcttatgtgaagtagaggtgttgcagcatagtaagcattgtagagtttgcgacaagtgtgttgatggttttgatcaccactgcaggtggctcaataattgcataggaaaaagaaactacaaaagattcttcattctaatggcttcagctgttctcttgcttataatgcagtggttagtgggcattcttgtgctgatactctgtttactgaagcgaggggagttctccggacagatcatctcaaagttaggaagtagcttctcaacagctgcttttgtaattgttgtgatgacatgtactttactagcaatgcttgcaacaataccccttgcccaacttttctgcttccatgttctgcttattaagaaaggcataagtacgtatgattatattgtagctttgagagaacaagaagagcagcaagaggttactgagcatcaaagcccgcagatgtctattattagctctgtgacagggtttagcacaactagctcatttgctcctcttcaacgtgggtcatggtgtactccgccacgtttattccttgaagatcagcatgtcattcccccagaaatgccacagaactcctcaagcaagaaggcaaagcatgctgatgtaaccaaacgaaaaccatcaggacctgtgaaaatcagtccctggacactagctcgccttaacgcggaggaagtttcgaaggcagctgcagaggcgaaaaagaagtccaaagttcttcagccaatcgcgagacatgaagatcctaaacatgacaagaggcgacccgacaagagagggcagtttctacctgaactttccgtcgatcacactacgaggacatctgatagctgcaccgacagcaactgcagcgacatggacatggaaacatgtggcagtttagccccattgcaacatgaagcgaggagcgttttccaaccaagcatcgcatcgtcgatcagaaacctcacctcatcacctcagagcagcctggactcacctgatcttcacccattccgtgtttcaatgtcaggagcagacgaactccgcagtttcatgtcactcgcagcatcagaatccactgctccaaaaagcattgcactttcaaggtcgacgagtggtgggtacgaggcctcgggaggcgaggaaagtgatcgcatcccgtcaaagatcgtgcaccggtcgtccaattgggccaatgccatcctcaattccggtaggcgagaaatggcagccgatctgaacttgccaacatctgaaagatttcttacaaacaccaggtttagctag</cdnaseq>

Protein Sequence

<aaseq>MRRHGWQLPYHPLQVVAIAVFLALGFAFYVFFVPFVGRSELQYV LMGLYTPLITCVVTLYIWCAATNPGDPGIFKAKKHPKLGKDGKQIQEISEHESCQGGK SFSDGCSIVNNSERLSNMFEGNDSSSRPGLHGVLCLICNPFFCLWKRFFHSDDQSSEQ HMSEEGMFFCSLCEVEVLQHSKHCRVCDKCVDGFDHHCRWLNNCIGKRNYKRFFILMA SAVLLLIMQWLVGILVLILCLLKRGEFSGQIISKLGSSFSTAAFVIVVMTCTLLAMLA TIPLAQLFCFHVLLIKKGISTYDYIVALREQEEQQEVTEHQSPQMSIISSVTGFSTTS SFAPLQRGSWCTPPRLFLEDQHVIPPEMPQNSSSKKAKHADVTKRKPSGPVKISPWTL ARLNAEEVSKAAAEAKKKSKVLQPIARHEDPKHDKRRPDKRGQFLPELSVDHTTRTSD SCTDSNCSDMDMETCGSLAPLQHEARSVFQPSIASSIRNLTSSPQSSLDSPDLHPFRV SMSGADELRSFMSLAASESTAPKSIALSRSTSGGYEASGGEESDRIPSKIVHRSSNWA NAILNSGRREMAADLNLPTSERFLTNTRFS</aaseq>

Gene Sequence

<dnaseqindica>335..376#471..584#1362..1733#2172..2240#2342..2413#2658..2786#3278..3358#4210..4395#4723..5448#attcaacatctctctctctctctctctctctctgaacgatggttggtgtgcttgctgctgctgagcactgatgcagccttttcttatgggcatttaatacctgagttattactgcaagggagggagggatcaaatgcaggcagttcaatagaaaaagaaaaaaaaagaaacaacctgagcaccagagttcttggctgctccaagttcgcattgtgatccacggagccggagaagggggcaaaacaaaaccttatggtttcttgattcatttctgctttggtgattgattcttggttccgtttcttgggccccgatttgggaggggttcttggcgatgaggaggcatgggtggcagctaccttaccaccctcttcaggtccagttcttgtttatttcttttggtgttttcgtttggtatctttttctggtgtatacttgtttttgttgctgattggtatgtgcatatgcaggtggtggcgatagcggtttttctggcactgggttttgcgttctatgtgttctttgtgccatttgtggggaggagtgagctccagtatgtgctcatgggtctctacactccactggtgagtagctgaaacaactttgccctctttaatgtgtttctaacctgttgtgttaattcttcatggcagatagatctgcatctcctttcagtttggggtgacttcttttgcactactcccttctgtgttttggtcggtataatatgtggagaatgtttaggagaaatactacattatgtaaggtccatgacatagagacagggataaactgcagagtagtttgtgcttcggagtagtttaggctaatataggtcagttttttataaatcaagactgacgacatgccatggtgaaaatctttgatgccactaatatgcctatgcttctgccaaagctattttagaagacagagtaattacctttttttcttctctgaagcattcaatccttacgatgtgatgaggaccaaggattcgaatcctttatatgatgtaatcggatgggtagaactaatagagagaagacattcaacactggaaggattggataaatccactgaatcgtaacaggggtaaatagcttaattaaaaattacgatacagtccatttgccttgctcttgatatataaaaattccatgaaatcatcaacgatgtagctttcactttgatcaaatgactatgcatcaaaacataaattttatatcttcaaccaacatgattttcattgcaattcgtaactgtatacttaagagtaactgcacattgatataacagcacatcgatgtgctcttgtattgtcaacaaaatgatgaatgacagataagtttttcttgcagattacttgtgttgtcacattatacatatggtgtgcagcaactaatcctggtgatccaggcatttttaaagcaaagaaacatccaaaattaggcaaggatggaaagcaaatacaagaaatttcagagcacgaatcatgccagggaggaaagtcgttcagcgatggctgtagcattgttaataacagtgagagattaagcaatatgtttgaagggaatgattcatcttctcggcctgggttacatggagttctttgcttgatatgcaacccattcttctgcttatggaaaagattctttcactcagatgaccaatcttcggaacagcacatgagcgaagaaggcatgttcttttgcagcttatgtgaagtagaggtatgttacaagctgatgtctgcttatgctgaactttacatctactttttgaaaaaactggagaatctctttaaactataacccattgagttaaaaatgaggattaaaattctcctcttaaaatactcagttatgcagtgacctgccatgtaattttagatatgagaccattgtctagtatgttaagttgttaacatcagaaacacaggagctataatttacaaacacttgcaatctggcttattatacatatattcagggaaaacacattttcttcttaataaaatctaaaagtgctgtaatactgcagaaaaaattatgtgaatatgttcaaaaatcacatgcctcaacaaaaggatgataccttctaatgcatcaaaatgttcttatctggacagttttactttatctgtttaaaaatgtatgactactgtgtaggtgttgcagcatagtaagcattgtagagtttgcgacaagtgtgttgatggttttgatcaccactgcagggtaattttctctctttttctcttaatgtttttttttggaaattatgtttttctttaagaaatattattcttagcataccttctgctttgatttgtccacagtggctcaataattgcataggaaaaagaaactacaaaagattcttcattctaatggcttcagctgttctcttggtaagtaaaaacctccactacaacctttgatgagcatctaaaatttaagaattattcaatttacagtatcctaaaaagaaactctgttatttttgtattattcctcgtgcctttaaatttatcactcaagaatcaataaataaaaactgcaatcctgtaggctttacatctagaaagtgctgctattccatatccactttttctggttgaccattgacagctctccatgattgtgcacattcagcttataatgcagtggttagtgggcattcttgtgctgatactctgtttactgaagcgaggggagttctccggacagatcatctcaaagttaggaagtagcttctcaacagctgcttttgtaattgttgtggttagttctctggaatttgcagctatttgagaaaaaaaaattctcatataatgttttaaatagcttttgtttcctgagttgcagtatcaaaatactcagaatttatgaaaaagaccataagtattaagacttgaacagtatgaaccctgtaaatgtgcattttattttggtgtgagaacctaacggatacattttggtcaacactgttttgattggatgtttcgaactagaacttaaactctcggtaaaaaattaaaaggataattggttatgtgagatgatggaaaagatgttgtctaatgtcatattaaccgtgtgctatataatggacagtctggcatagttgctggtttggaaatttgaattttgctttactagtttacaacattaaagtgtgaatgggaagctatatttagcgtagaattactgttgcttataaagcactattgagaatccatcctatttctttctaacacaaattacttttgcagatgacatgtactttactagcaatgcttgcaacaataccccttgcccaacttttctgcttccatgttctgcttattaagaaagtaagcaatagctttacctgcagatgatatgtaccaagatcagttttaacacagcatagatagaagtgttattaatgattgttgccctgttttcttaacatactaattcatattggttgcaacgacactcaattttcctcttttcgctcttatctgaaaagatcataactgtaacaaattaaagtgacactcatttttctgtctactctgcagtgtgcaatagttttaataaacttaagtgagtttcttcctcctgttaagtaataacagttcactattttgacaagtctgttcagatatcagtcagactcatagttacacattggcccctacagactgacatcaaattgtaaaatgtgaattgttaaaaacatcaaggcaagtacagagattcttaggaacgacaaacacataatttaatgtggaaaacccttgctggaagaaggaaacactggcgcaaaacttttgatgatcgctaactacagtgcagggaatttgcaaagagtcgtttacttattctagagctaagtagatgacaaatgcaggaatatggcctgtacagcaaagcaatccttcactgtcaatagaactcttatgaaattaagataatatttatactaaaccttgatacaacaagttatatgttggaaaggaaggacaatagctctctctttcttgaagttaattcttggaaataatattatataacgtgttgaacatgcttagtcttatgttattaccgaattatgtttatagtctttttctggaagagataatatgcttagcttttcaagctatctcttatggtaaagttgatttacgtattctactttctatccacgtgtatgcagggcataagtacgtatgattatattgtagctttgagagaacaagaagagcagcaagaggttactgagcatcaaagcccgcagatgtctattattagctctgtgacagggtttagcacaactagctcatttgctcctcttcaacgtgggtcatggtgtactccgccacgtttattccttgaagatcaggtatacagaatatcagatcatgcacattttctgattgttgtgggaaaaagaagaaagtttgtgtttgagatatttgtcagctactacttaaaaaaaatggatgtctgaaatttagttgtagaatagttagaaatagctcacttctagagtttggtttgtattatcttttagaacttttcttgtgtagctactgttctacacttgattgtactcatttgtagtggctagcatgctctgaagtctgaattcaggtgtcaggatgaccatgtttcatagatttttttttctgggttatttttggcacttattgttatgctgtttctgcagcatgtcattcccccagaaatgccacagaactcctcaagcaagaaggcaaagcatgctgatgtaaccaaacgaaaaccatcaggacctgtgaaaatcagtccctggacactagctcgccttaacgcggaggaagtttcgaaggcagctgcagaggcgaaaaagaagtccaaagttcttcagccaatcgcgagacatgaagatcctaaacatgacaagaggcgacccgacaagagagggcagtttctacctgaactttccgtcgatcacactacgaggacatctgatagctgcaccgacagcaactgcagcgacatggacatggaaacatgtggcagtttagccccattgcaacatgaagcgaggagcgttttccaaccaagcatcgcatcgtcgatcagaaacctcacctcatcacctcagagcagcctggactcacctgatcttcacccattccgtgtttcaatgtcaggagcagacgaactccgcagtttcatgtcactcgcagcatcagaatccactgctccaaaaagcattgcactttcaaggtcgacgagtggtgggtacgaggcctcgggaggcgaggaaagtgatcgcatcccgtcaaagatcgtgcaccggtcgtccaattgggccaatgccatcctcaattccggtaggcgagaaatggcagccgatctgaacttgccaacatctgaaagatttcttacaaacaccaggtttagctagctagtcatttgctgtgctgctagttgtgaatgggctgtaggatttactgacctgttactggttagaagtagtagtgttgttgcaattgtgaccaatatctgttccagccaagacaattgcctcatattgggtttagctgctgtactgctctaatttgctctcttgcactcagttttgtactctccgtgctcaacctgcatggttgaccatgggatacatttgacggatggcattctttcaacagtttgttttgctagagcccctttttcatatgcaaaatttagacaccc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0337500, RefSeq:Os10g0337500