Os03g0669000

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Revision as of 12:52, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0669000| Description = Similar to RNA helicase (Fragment)| Version = NM_001057396.1 GI:115454520 GeneID:4333678| Length = 4746 bp| Definit...")
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Gene Name

Os03g0669000

Description

Similar to RNA helicase (Fragment)

Version

NM_001057396.1 GI:115454520 GeneID:4333678

Length

4746 bp

Definition

Oryza sativa Japonica Group Os03g0669000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:27141138..27145883

Sequence Coding Region

27141405..27141530,27141754..27141842,27141943..27142054,27142136..27142273,27142429..27142575
,27142883..27142957,27143052..27143093,27143458..27143577,27144231..27144305
,27144476..27144538,27145115..27145184,27145302..27145431,27145522..27145753

Expression

GEO Profiles:Os03g0669000

Genome Context

<gbrowseImage1> name=NC_008396:27141138..27145883 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:27141138..27145883 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagaagaaggacgtggaggtggaggagttggatgaggaggtggttgccgctgccgccgcccccgccgcggacggtggcgaggagcaggaggccgagccaccggcgcgtcggccgtcgacgttcgcggagctgggcgtcgtcccggagctggtggcggcgtgcgacgccatggggtggaaggagcccaccaggatccaggccgaggccatcccccacgccctcgaagggagggacctgattgggctggggcagacgggctccggcaagacgggcgccttcgcgctgccgatcatccaggcgctgctcaagcaggacaagccccaggcgttgttcgcctgcgtgctgtcgcctacaagggagctggcttttcagattggacagcagtttgaggcactcgggtccgcgatcggtctgagttgcacggtgcttgttggaggagttgatcgggtgcaacaagcagtatcccttgcaaaacgcccacatattgtggttggaactcctggacgtcttttggatcatttgacagatacgaaaggttttagccttaataaattgaagtacttggttttggatgaagctgataagttacttaatgtggagttccagaaagcccttgatgatattctgaatgttatccctaaagaacggaggactttccttttttcagccacaatgaccaataaggtttctaaactgcagcgtgcttgtctaagaaatcctgttaaggtcgaggtagcgtccaaatattctacagtggacacacttagacaggagttttattttgttcctgcagattacaaggattgttttctcgttcatgttctgaatgagttgccagggagcatgatcatgatctttgtccggacctgtgaatcaacaaggctccttgctctcaccctaaggaatcttcgttttaaagctatctctattagtggccaaatgagtcaggataagagactaggcgccttaaacaggttcaaaacgaaagactgcaatatccttatttgcaccgatgtggcaagtcgtggtcttgatattcaaggagttgatgtggttatcaattatgatattccaatgaattccaaggattatgttcatcgggtgggtagaacagcacgtgcagggaatacaggatatgctgtatctttggtgaatcaatacgaggccatgtggtttaagatgatagagaagctccttggatacgagattcctgatcgtaaggtggataacgcagaaatcatgatacttcgtgaacgtatctctgactcgaagaggattgcgctgacgacgatgaaggagggcggtggccacaagaaaaagcggaggaagaacgaagatgatgaggaagaggaggagcgcaatgctcctgtttccagaaaatcgaagtccttcaacaaatcaagaagacggtga</cdnaseq>

Protein Sequence

<aaseq>MAKKKDVEVEELDEEVVAAAAAPAADGGEEQEAEPPARRPSTFA ELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQA LLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVDRVQQAVSLAK RPHIVVGTPGRLLDHLTDTKGFSLNKLKYLVLDEADKLLNVEFQKALDDILNVIPKER RTFLFSATMTNKVSKLQRACLRNPVKVEVASKYSTVDTLRQEFYFVPADYKDCFLVHV LNELPGSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCN ILICTDVASRGLDIQGVDVVINYDIPMNSKDYVHRVGRTARAGNTGYAVSLVNQYEAM WFKMIEKLLGYEIPDRKVDNAEIMILRERISDSKRIALTTMKEGGGHKKKRRKNEDDE EEEERNAPVSRKSKSFNKSRRR</aaseq>

Gene Sequence

<dnaseqindica>4354..4479#4042..4130#3830..3941#3611..3748#3309..3455#2927..3001#2791..2832#2307..2426#1579..1653#1346..1408#700..769#453..582#131..362#cataatctccacgcctcctccttccttctttaaccgccgccgccgcagcttcatcgccaagccacctccgccgccgaagccaccaccgcttccctcccactcgggcgagctcccccgtctctccgtagccatggcgaagaagaaggacgtggaggtggaggagttggatgaggaggtggttgccgctgccgccgcccccgccgcggacggtggcgaggagcaggaggccgagccaccggcgcgtcggccgtcgacgttcgcggagctgggcgtcgtcccggagctggtggcggcgtgcgacgccatggggtggaaggagcccaccaggatccaggccgaggccatcccccacgccctcgaaggtacggatacctaccctagcgcgccaccgccgcggccatgtcgtcgacggcgatccagctactgatgggcgtgctgtggtttgcttgcagggagggacctgattgggctggggcagacgggctccggcaagacgggcgccttcgcgctgccgatcatccaggcgctgctcaagcaggacaagccccaggcgttgttcgcctgcgtgctgtcgcctacaaggttgccaaatctttagacaagagttctccatgtagtactgtacttgttttttttttctcctcgagagaagattctccggttggtttactgtaaccatgagggggtgtgcttgttcagggagctggcttttcagattggacagcagtttgaggcactcgggtccgcgatcggtctgagttgcacggtggtgagtgattttgttacaatttattacaagtgacaatattttttttggattatggataatgtgtatgctttctcatctctttatgcagttcacctttatcacataccaaacaatcgattggtgttttatgaatgttgttaacaagtttttagaataggctatgtagctggttagtgctcgcaatataggttttatctagctggctagtcttttccctggattttggtacacaattatggtcaattggtgtttcggttgatgctgatgtgccaatctgtgttggcttcttccatctgttggatgagtgtccactgcaaaatatttccttttgttttggtattgcatctgttggatattgtaacacctgcaggagctatatttaaatgcattggtttatattctctctaatgttagtttttttcttcttctgactataattgaatttgctgctattacatgcatagattccttggttattatgctcttgtatgattaaaagcgagtcctcatattttcatccattacaacttgttgatgttttattgaccactatcaattgaatttccctttccccagcttgttggaggagttgatcgggtgcaacaagcagtatcccttgcaaaacgcccacatattgtggtatgtgtattttagtaaatgatttcctctacctcataagacaatgtggttttggtctgttaacatcattcctatccatgagaactttgttacataaacctgctagtacaaatgagtgctttcatccggactctcaggatatttactgtatcatttccctcaaaacttaggttggaactcctggacgtcttttggatcatttgacagatacgaaaggttttagccttaataaattgaagtacttggtatgtcccctctgttctttttttccccatgttgcttcttgttattattcatacttcattaaataatttgatattgtggccttggatatatttttcaacattttctagttccacatatcaatatattcttgtcaaatccatcttttatgacaccatggtttgcccatctttaaaattatgctccttttccattgtgtcaatttttcttctgtttcattcatactccaactattatcgacatttttgggtataattttttacttaatcgaggctctgtctgaatcttgtgagttttagcaaggctggatttttttagtctagattttgttttttaaacttaaaatatcatctttgattgctgcaggtacagcctttaaaaatgaaggctttagtaatacctttttacttgttgaaatatatttttcacactctgtgcagcaaaatttaattttcattttatattaatttccacccctcaagtttaagtgttacaatcactattaataattgtaaatatgtgtgatgcaatggtaagtaccttgtcaactatgtcatgacatttgtaaatatgtgttgaatatggatcaattatattagtttttctaattaattgctttttttttatgtgtccttatctctttttttttggctaggttttggatgaagctgataagttacttaatgtggagttccagaaagcccttgatgatattctgaatgttatccctaaagaacggaggactttccttttttcagccacaatgaccaataaggttggtgaattggtagttttcagagaagaattattattcctctggattcaagaaagaacggaattaaacattgctggtatcccatcaatagattgtttactttatcagattgatgtggccatgctagcagcttaggttaatattataattatgacactggtttataaattcttgaggtaatgaaatggtagacattctatttattctgacgtatgctgtattgctactgtgctaccatttactgatattttgtattttctaaatcatggcctatttttatggcacctgatggctattatgctatctatttgtttacatttagactgaatttggttttctttgcaataacgtctattttctccaggtttctaaactgcagcgtgcttgtctaagaaatcctgttaaggtaacattctttctccatctttcgggcatgatggggaccttttcaggtatcttattgtttgctaatagtctcaacttttcatttctgcgatcaggtcgaggtagcgtccaaatattctacagtggacacacttagacaggagttttattttgttcctgcagattacaaggtcaattcttatcccttataattggtctattgacgtccatgtggttttgatcttattaaattggctgcatgctgactgatggttctacccttaatgtccttattaagagtcataacaaagcaccatcattggttgtacacacgcaacatcactttgaaacttatccggtacatttaataagcaatcctgaaaaatgttgctcatgatgaattgaaagccttgcataagtcattacatgatgttgcccacatcatggtagagtgccattttcattcgatgttctgatctttcttatttattattccaggattgttttctcgttcatgttctgaatgagttgccagggagcatgatcatgatctttgtccggacctgtgaatcaacaaggctccttgctctcaccctaaggaatcttcgttttaaagctatctctattagtggccaaatgagtcaggttagtatgctttcctttcaaatagaaattgttcgttttctcattgagttatccttcaatttagaacttacaaggtagaagtgaatgcaaatgtttgtttttcccgtacaatgcttatcttacatttgtcttcttctttttttttaatttcttaggataagagactaggcgccttaaacaggttcaaaacgaaagactgcaatatccttatttgcaccgatgtggcaagtcgtggtcttgatattcaaggagttgatgtggttatcaattatgatattccaatgaattccaaggtttctactttagtacctttctcgatttacattttgaagatgcctttttgtatgtgacttaacttcctgtgccaaatgtaggattatgttcatcgggtgggtagaacagcacgtgcagggaatacaggatatgctgtatctttggtgaatcaatacgaggccatgtggtttaagatgatagagaagctccttggtaattcttatccttgttacttctcccttctttccatttgtaactggagggcgtgtcattctgaaatctgtggatctgtttatcaactatttttttgtaggatacgagattcctgatcgtaaggtggataacgcagaaatcatgatacttcgtgaacgtatctctgactcgaagaggattgcgctgacggtatgtgctcattctctgactgtactgtcaattcgaagtgttttactcttgtgtcaccctggcggtgccccctcaatattctgcagaacggatgcacacctgcttccgacgacctgaatgtagatagttcgtcttgttcttgttgtggtagagccttgtgtcttgaatcgtacgacttcttatgtgcgaattgatttttacttgttcttgctgtctgatgcagacgatgaaggagggcggtggccacaagaaaaagcggaggaagaacgaagatgatgaggaagaggaggagcgcaatgctcctgtttccagaaaatcgaagtccttcaacaaatcaagaagacggtgaaagcattggagcaagtgatcgtgaggcgagcttgggatgagttagattagtattatactggcataccaccgccacaattttatgtaaccattcaagaatagatatttatgtaggtccatttcgacgaattagctattttattatttgtgaagctggatcttggaaaatttgctcatctgttgctacaaaagcatatatggaaaatttgctcatctgcttccacaaaagccggtggcatcaggtgatctggacgagagtcattgtact</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0669000, RefSeq:Os03g0669000