Os03g0679700

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Revision as of 12:52, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0679700| Description = Similar to Thiamine biosynthesis protein thiC| Version = NM_001057432.1 GI:115454592 GeneID:4333719| Length = 6944 b...")
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Gene Name

Os03g0679700

Description

Similar to Thiamine biosynthesis protein thiC

Version

NM_001057432.1 GI:115454592 GeneID:4333719

Length

6944 bp

Definition

Oryza sativa Japonica Group Os03g0679700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:27712487..27719430

Sequence Coding Region

27713686..27713972,27714081..27714211,27714836..27715662,27716482..27717156

Expression

GEO Profiles:Os03g0679700

Genome Context

<gbrowseImage1> name=NC_008396:27712487..27719430 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:27712487..27719430 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgccctgcaaccctcattctcttcagcaatggctatgaaaagtctgaagttacccaaaactgcagttttacctggatttggtggtattgcacgtcctcaagatgtgcaggacaggagcgctaacttcacttgttcaaggcctagagcagcttcagtgactgaccagtcaacagcagagccagcaaaacccaggcaaaacaagcacactgttgatccttctgctccagaatttctgccactcccatcatttgaagaatgctttccaaggagcacaaaagaatccagagaaattgtgcacgaggaatctggccatgtcctcaagatcccatttaggagaatccatttgaccggagatgagaagcattttgacacatacgacaccagtggtccacaaaacattagtccaaggattggacttccaaagataaggaaggaatggattgacaggagggagaagttaggtggtcctcgatacacacaaatgtattacgctaagcagggaatcataacagaggagatgttgtactgtgccacacgtgagaaccttagtcctgaatttgtccggtcagaggttgcccgtggacgagctataattccttccaacaagaggcacctggaattggaacccatgattgttggacgaaacttccttgtaaaagtgaatgcaaacattgggaattctgctgttgtgagctccatcgaggaggaagtacacaagctccagtgggctacaatgtggggagctgatactgtcatggacctttcaacagggcgtcatatccatgagacccgggaatggatccttcgtaattcttcagtccctattgggacggtgcctatttaccaagcacttgagaaagttaatggtattgctgaaaatctaagctgggaagtctttagagatactttaatcgaacaagctgagcagggtgttgattacttcacaatccatgctggcgtgcttcttcgttacattcctcttacggcaaagagaatgaccggcatagtttcacgtggtggctctatccatgcaaaatggtgcctaacatatcataaggagaactttgcctatgagcactgggatgaaattcttgatatttgcaatcagtatgatgtggcattatccattggcgatggtttgagaccaggttctatttatgatgcaaatgatagtgctcagtttgcagaattgctgactcaaggggaactcacacgccgagcttgggcaaaagatgtgcaggtaatgaatgaaggcccagggcacattccgatgcataaaattcctgaaaacatggagaagcaactggagtggtgcaatgaagcacctttctacacactggggccactgacaactgatattgcacctggttatgatcacatcacctccgccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgttaagacaggcgtgatatcctacaaaatttctgctcatgctgctgatttggcaaagggccatccctatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctatctctggatcctgtgaccgctatgtctttccatgatgaaacattaccatcggagggtgccaaagtggcacatttctgctcaatgtgtggcccaaagttttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacgggacagtggaggaagcggtgatacaaggaatgaatgctatgagtgctgagttttcagctgcaaggaaaacaatcagtggggagcaacatggtgaagctggaggggagatatatgttccagaaagctatacagctcgcaaataa</cdnaseq>

Protein Sequence

<aaseq>MAALQPSFSSAMAMKSLKLPKTAVLPGFGGIARPQDVQDRSANF TCSRPRAASVTDQSTAEPAKPRQNKHTVDPSAPEFLPLPSFEECFPRSTKESREIVHE ESGHVLKIPFRRIHLTGDEKHFDTYDTSGPQNISPRIGLPKIRKEWIDRREKLGGPRY TQMYYAKQGIITEEMLYCATRENLSPEFVRSEVARGRAIIPSNKRHLELEPMIVGRNF LVKVNANIGNSAVVSSIEEEVHKLQWATMWGADTVMDLSTGRHIHETREWILRNSSVP IGTVPIYQALEKVNGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRM TGIVSRGGSIHAKWCLTYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND SAQFAELLTQGELTRRAWAKDVQVMNEGPGHIPMHKIPENMEKQLEWCNEAPFYTLGP LTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKTGVISYKISAH AADLAKGHPYAQAWDDTLSKARFEFRWLDQFALSLDPVTAMSFHDETLPSEGAKVAHF CSMCGPKFCSMKITEDIRKYADEHGYGTVEEAVIQGMNAMSAEFSAARKTISGEQHGE AGGEIYVPESYTARK</aaseq>

Gene Sequence

<dnaseqindica>1200..1486#1595..1725#2350..3176#3996..4670#gctcacgagttcctcacttcctcctccgcccgcgtcgcccctcctctcctctccctcccggctcccggctaccgccgccgccgccccgaggtgagagaacctttccttccgctctccggcattcgtttcgatcagaacgaacgggggatttgcctcgtcggaatccgtgggggatctcgcgcggccgacgggccggggttgcggttttggatgctgcttctagcggtagcatcgtaggtttctggatgcgttgtggattaggggggtaaggattttggctggtctcgctttgcttgcctgcgtctttgcgggtgtgatttccgtatgatacggttgatgcttgatagatcgtgcgcgcgtggtgaaggcctctgttgctaccgtggttatctagttctcgatcgtattggtacatggggggcctctttgattctggacgctagtttttccacatgggtatatgctctatgctcttgttcggtgcagtgcacacgggagaggggagacacaagttccacaactcctttgtaaggcatgtttcatctgagatgtagagtagtatagaaggaagtgtatttttgtccctcaaggggacatcccatcgttttgtgcatagcgttcaaaaagttatcaaaaaatttgaaaagaaattgtcaagatagatcattatacgatatatctttttcaaacatgcaagttaaaattcgacttatacaatttgaaacaaaaataacaaatttaaccgtgaattacacgttctattcatagttaaatttgttatttttgtttttacttatataagttgaatttgaatatgcatgtttgtgaagttacatatcacatattgatctatcttactaaattattttaaattttttgatgactttttaagtgacatgcaaaaatgaggggatatccccttaagggatgaatagagttctccagtatagaattgaaatatgaatcattttttcaatcaaaaccagttcatcaggcatcatgaatgaactctgaatattaaaggcatcagagctagaggggttatttcgactgctacatgcatttgtcgtcatcttcagatagcctacatggagataagattaggactgtagttttctgcaagtgcagatataaagcttttgagttgatagcgttgcactgtctttaatcattaatttttctctacctttggacaggaaatggctgccctgcaaccctcattctcttcagcaatggctatgaaaagtctgaagttacccaaaactgcagttttacctggatttggtggtattgcacgtcctcaagatgtgcaggacaggagcgctaacttcacttgttcaaggcctagagcagcttcagtgactgaccagtcaacagcagagccagcaaaacccaggcaaaacaagcacactgttgatccttctgctccagaatttctgccactcccatcatttgaagaatgctttccaaggagcacaaaagaatccaggcaagatttacatttcacttttcattaagaactgtattggaattacttacattccggtatgttaacgcctccactaaagcttatgttgcctgtgactatgttcttcagagaaattgtgcacgaggaatctggccatgtcctcaagatcccatttaggagaatccatttgaccggagatgagaagcattttgacacatacgacaccagtggtccacaaaacattagtccaaggattggtaactcactgacctcatttctcttgtcaaactaaacccccaaaccaagctaatgaacataacatcttacatttttttatcaatcctgcatgaaaggaaagatcagcggcttagtggaaattatttcttgttcttttatgttcactctaatgcaattatgataccttatattgttttgaactctttttgttatttttatttacaaattttattttttttatatttctgtactatttgcggagttttatttttcatttataccaatttatttcaaaactaatagaaataatttccatagggaacatggacgtatgatattaggtatcgtgcagtttgatacatgaatgtaattgcatagttaatttgatagtaccaaaacggccagtaaaaagagatgacaccagaacaactgaactaatactgttaaaccaaaatggtatacaaaccagtgttgacatcatgcagtgcctaggctaccttttctcacattttcgctacataagtaactatgtccagtcctctccatattcaaataactatactgataggatggttgagggttcttccctctctttccccctaacatatttgacaatttgcataagcatttgaatttttttgcaggacttccaaagataaggaaggaatggattgacaggagggagaagttaggtggtcctcgatacacacaaatgtattacgctaagcagggaatcataacagaggagatgttgtactgtgccacacgtgagaaccttagtcctgaatttgtccggtcagaggttgcccgtggacgagctataattccttccaacaagaggcacctggaattggaacccatgattgttggacgaaacttccttgtaaaagtgaatgcaaacattgggaattctgctgttgtgagctccatcgaggaggaagtacacaagctccagtgggctacaatgtggggagctgatactgtcatggacctttcaacagggcgtcatatccatgagacccgggaatggatccttcgtaattcttcagtccctattgggacggtgcctatttaccaagcacttgagaaagttaatggtattgctgaaaatctaagctgggaagtctttagagatactttaatcgaacaagctgagcagggtgttgattacttcacaatccatgctggcgtgcttcttcgttacattcctcttacggcaaagagaatgaccggcatagtttcacgtggtggctctatccatgcaaaatggtgcctaacatatcataaggagaactttgcctatgagcactgggatgaaattcttgatatttgcaatcagtatgatgtggcattatccattggcgatggtttgagaccaggttctatttatgatgcaaatgatagtgctcagtttgcagaattgctgactcaaggggaactcacacgccgagcttgggcaaaagatgtgcaggtgagaacaatgtgatcaattaaattacaaactttatgcatttcatatcctcgacacattgtaatatactccgccatagtttaatgttccaatttttcgtatatgaaactgagaacatgtattgtgaataaacttatacagttgacttattggtctctgattttgtctgttgacaagaatatagaacatccttgaaataagtatcgcctgctatctatactgaaactatagatgcaaatcctatactcgatatgcatatggttctactaaaaaaatgcatgaaataaacgatggcctgtagagtatagggtctctagaactggtcagaaagtagaagatatttgcaaagatcagcgcttaaaacttattcttgttcaaaatgttagtttggtgtaaatagactacaaatgaataaatagtagaaatgagctgattgctaaatctgcaggcattaataatgtcacttattttggaagtattgtattatacaactacatgttcaattaatgcaatatagtcttccttaatcattaagcttttgcagaaagtatctgtagaaatttacttctcttcttgcttgttacactctttgtgaactcatacagataaacatatgagaagatgttagagatgtggttttaaaactctttattgtaaatgacatgctctaaatgatgaatcgtttttgtttccctaataatttggtagtagaaactttgaacggtgatgtgcctgaatgatgatttgtttccattagctacacaattcaattttttttaaccttgtcaagcagtgtttttgacatttctcaatttttaggtaatgaatgaaggcccagggcacattccgatgcataaaattcctgaaaacatggagaagcaactggagtggtgcaatgaagcacctttctacacactggggccactgacaactgatattgcacctggttatgatcacatcacctccgccattggtgctgccaacattggggctcttggcactgcacttctctgttatgtaacaccaaaggagcaccttggattgcctaaccgtgatgatgttaagacaggcgtgatatcctacaaaatttctgctcatgctgctgatttggcaaagggccatccctatgcacaagcatgggacgatacactaagcaaggcaagatttgagtttagatggttggatcaatttgctctatctctggatcctgtgaccgctatgtctttccatgatgaaacattaccatcggagggtgccaaagtggcacatttctgctcaatgtgtggcccaaagttttgttcgatgaaaatcacagaggatattagaaaatatgctgatgaacatggttacgggacagtggaggaagcggtgatacaaggaatgaatgctatgagtgctgagttttcagctgcaaggaaaacaatcagtggggagcaacatggtgaagctggaggggagatatatgttccagaaagctatacagctcgcaaataaggttggtctttttcttatcatgtatagttcaccttgtgggagatgtttggactcttttgttctgaatatgtagggtttttaactcagtatgaagcaattagtcatctggagtaaaatggtctagtgccgtatttcaatcagttttacataaataagccattaatgtgagcttaccgtcttgaaacagcttttcagatgccttctctagcacttttgttgacccagtaacttcatacatgctactagttatatagcattagtgcttgttacaaatatttctgaattatcttgactaaataaatactactcgagtactatctaccattcagtaaacattctgctaatccttttactccctccatcccgaaaaaaatgaatctaggactggatgtgacacatttagtacaacgaatctggacagaggtatgtctagattcatagtactaggatgtgtcacaccagtactaggttggttttttatgggacggagggagtacatcagaaatttttcataaatctatgagaactgttgtaattttgactccacacactatcttcagttatatttcttaagggaaaattactctcacagcaatcctttgaaatgggtttgcatgtacatttgaaatttgacactaactgtaatagcactggatagctgctctgtttttatcaacttctacttgtaatttcagggaccttaataaacctttagtggcttggacttgtatgtgcattactgcaaaggcactaacttttatatcacaataacatgttctcgccttctcggaactcagaatacaatctccgtgcagatcgtcttggtgtccatctactccgggtggagcgtttatcagcagcactcctcaccatcctatgttaggaggtggtaagcagtataagtgccttgaataaagctggtgttgcttagctcaatttgttaattctgtcgtggcttgtaataaaattaaactctatatgtgatccttccgtgtcatattttctactctttgcatcactgtgggttgttagtaatgaaagttgcaccaggggtgcctgtattctcaacgatctgaaggcctcttggcctggattgttgtgaattgggctgagaaagtccctttgaacctgaacaggataatgcctgcgaagggagtgtgcatttctacttttatgtttccagggaactctcaacacaacccctttttggtgggagatcgagctatccaatatgttcctgaacgtgtgagctcagcagctggatatacctgtttcttacaactgaggtaacatggtaataatacttcatttgataagtggcatgctgacatttctccaacaggagaggatttctgcagataccacttcgtaatgtcccagaactgatttagtcatacatttattatccgtgtaaatttgcaaagcgttggccatgtcctatgcaattgattttaaaccatctatctgcacatatctaattaaagtataaaacaatttataaactctacataatggacattttagctgcatgccacttgtcaattgagcacacaatatactgactaaattcaatttaacttgatcatgattcatgtggaaggtgtttattaggaattaatttattgatatggccagagacttgtttatttttagctatttatttgtctttcccatagaaatgatcaaattttgtacttgcaccttgtgtaagtataatagaattatttagtctgttttggagcattcattaatgcaatgatgctcagccgctcagatctttgcgtagcattatccaagaaaacaagtctttttgtatcccctagataatttgaaagcacccatacatgcacaatagcatgtgaaaaagaactttagctaggttctgttgaccgattatgttgtaggataggaatcatctgcctgtagaacataatttgggcattatcttctgatgttataatcatgtttttctcagcaaactattactccgcactccattttgtgtttgcgatgtggaattattttacctgtgatccaatcccattatttgactgacgtgaaacgttaagtgaaatgacgtgtggacaaagttgctcgtggctggagtctttatgctcgtggttaacaatttggagatgaattttgctctgattgtgctcctgcaatgtgtttttaattttcatcataacggatcttgacactattttctatcagattgttacctgttgttcattccgagttcagtactactatacaatgtccgatcaagttcag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0679700, RefSeq:Os03g0679700