Os03g0681400

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Revision as of 12:52, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0681400| Description = Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ...")
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Gene Name

Os03g0681400

Description

Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42)

Version

NM_001057441.1 GI:115454610 GeneID:4333728

Length

4942 bp

Definition

Oryza sativa Japonica Group Os03g0681400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:27871924..27876865

Sequence Coding Region

27872158..27872253,27872339..27872427,27875925..27875988,27876101..27876203,27876509..27876612
,27876763..27876792

Expression

GEO Profiles:Os03g0681400

Genome Context

<gbrowseImage1> name=NC_008396:27871924..27876865 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:27871924..27876865 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgagctcctcctccccttcccgcaaggtgctgagcaagatcgcgtgcaaccggctgcagaaggagctcgcggagtggcaggtcaaccctccctccggcttcaagcacaaggtcaccgacaatctccagaggtgggtcatcgaggtcgcgggggctgcgggcacgctctatgccggagagacataccaattgcaggtggacttccctgagcattaccccatggaggctccccaggtcatatttcttcatccagcgccaatgcatccgcacatttacagcaatgggcatatctgtttagatatattgtatgactcgtggtcaccggcgatgaccgttagttctgtttgtatcagtatcttgtccatgttgtcaagctcaccagcaaagcaacgtcctgccgacaatgatcgctatgtcaggaactgccgcaatgggaggtcgccgaaggagaccaggtggtggtttcatgatgacaaagtgtga</cdnaseq>

Protein Sequence

<aaseq>MTSSSSPSRKVLSKIACNRLQKELAEWQVNPPSGFKHKVTDNLQ RWVIEVAGAAGTLYAGETYQLQVDFPEHYPMEAPQVIFLHPAPMHPHIYSNGHICLDI LYDSWSPAMTVSSVCISILSMLSSSPAKQRPADNDRYVRNCRNGRSPKETRWWFHDDK V</aaseq>

Gene Sequence

<dnaseqindica>4613..4708#4439..4527#878..941#663..765#254..357#74..103#gcacacctttccccccctctctccctccctcctccgccatccctagcagccgccccgcacccgcgcccgcaccatgacgagctcctcctccccttcccgcaaggtaccaaaccctaaccctaaccccctcctctctaccctcatcccctccggatcccatctcccctccgccccgattcgccgtaatttgttttgggggtttttttctctctctctctgagctgtttgtgtgtgtgtatgtgtgttcgtgcaggtgctgagcaagatcgcgtgcaaccggctgcagaaggagctcgcggagtggcaggtcaaccctccctccggcttcaagcacaaggtcaccgacaatctccagaggtgaccccccccctcccccgcgaccactccaaacccacgcggtttttgtccttgccgctttcgcgtttcgtctctttccctttcgattcagatgaaatcgcaaacccttttcggcgtcctgattgacccaggatctcctttttttctatgagggttttggccgcgtagtcgtgaaatattcagtcgttcatgttcttgtatgatttatttattttcaactttgatactttcttgtgattttttatccatgtgaaaagcatgaaaaataatatatcatgatatggattattccgaaataaaaaaaggtgggtcatcgaggtcgcgggggctgcgggcacgctctatgccggagagacataccaattgcaggtggacttccctgagcattaccccatggaggctccccaggtgggatttcttgccttctctttatactatttatttatactgtgtttagtttgggtatactgcatgcactggaatccaacgctttgggtttgatcgacttgtttttctgtaggtcatatttcttcatccagcgccaatgcatccgcacatttacagcaatgggcatatctgtttaggtaaaatgattgtatgctcctattgatgcataaataattgttgttttcgttcttgatgcttttgcccactccattaattctcttgggtgtacagcatttttactggacctgttttacagttttagcatgtccacgaaatatgcctttctgtcttgctaatgaaagctgccatcttcaatggcaagcataatacttaggagtttaaagtagtaaataactagggtagtaactgtatgataagttttaaacacatttagctatcccagctgtaccttttaactttatatatgctgggaagtgtacaaacttagaaagtaacacttgaagtccttagatatgggtgtatgggcatagaggaagtgactagaatataggtggattaaccttatccacttctatttgtctagggtaatcctgtgttagataatgttgaccaagatcaacacttgtctcttccaccaccacatgttgtttttagcacctttgcatatcctcttgtcgttcatgatcaagaactcccaactttttgacacatctgggcaattctgctattatgttcctgattgacatttaacaatttgactattggctgtgctgtgatgtctggtctgttcatggaggttctggatgtagttaagctgaaattctagcctatgtggttatctagttaaatttatccttaagaggctgcaccccttatttagtggaagttctcttgtaagttacaacacacaagttaattgatgtgtactatgtactttatgtaattccttgatgcattgaaatggatggttacaaactttccggtggattggtaaaatagtttatgatagagcggtgttgagatgaaccattcaataaattctcccaacgtagcaaacctgtacaataagatgtcttgtactcaacaatttttacaagatgttatgaaacacataatacatgcctgccagatacctcaagttattagatgttattgttgtgcatatattctaatggtgggatattccaaaattttcttgtattaatgggacaatactgtacattgtcatcggatattgtcctgcctgctgtgaaatgttcaatccagtgtagattgctaagtgtacagaatctaactagtttgtcatccttttcaagaaaaatggttgcccatgatataagcattcccactatcagcttacattaatattggcaagcacaagtcctctgcagtattacttctctagttaaagcaatgcctttttgcagatgtatatgcagcagatgcaccctagaaaattttcaaatcttgagcatcctgaccatggttcaagaaggcgctagttgggtgactggggggcgcctcggtcaggccagatagtcaaatccaagaaattagcaagcatattgcataaaacttggacttcataacactaaaatagcaacagaacaccacccacgttagttcagccgcctaatgcaccatctaatacttaatcgtggcggctacctagtgcatagagccaacttttagaaaactgatcttgactcccaagttgctcatatttaacggcttacccatagtataaaaatccaccagacggcaagccggcacaactcgtggttcacagcaacccccactgccaccccccctcccccccagcacacacacacacacactgcctggtcccactgttggactgctgaaccatggctcactaaaatcgataccgatgtatattctccatgtaacacaagtgatttgctacctggatggttgaagggcagcagctgcaggttgctcaccagtgttctatcctctgcctccttttttttctcataactgggcctaacttgccattcactgatgagccgtgcggtttatgatccgtttccattggttcaccagttcttagaaaaaccatctggttttcctggtttactctcctgtccaatagcagaagcgatccttcacacaaaccaaaccggaagggatgctggttaagtatgatggtgcaccttcctcttttttaactgaattattgtcttttcaactttgcaaacattcagttcctttcctaatgcagtgatgccactttttggaatgattgttttgctactttatttgtctatcactccacctgtctagttcagtacaaaatgaaatttggtgaattgagttgtgcatttgcattcccctttactttctaacattaatataaccatgttttgacttttaatgcaatacatgaccagaggaatgcctccttttatgcaaagagcatgtgttttgtaggtgaaaggtatctattacaccatacaaatgaatctagcatggctcaatgcatttaattcccttactatgtgtgctggataaccttttttcccggtttgatggtgtggcttgtttgttttttcctgtcaactagcgacatacccatgctttgctattggcagaagaaacaaaatattattgtatgtcatagtaaaacatattttatcaaatatcttagcatcacttgtttgcttattttattatctgatactagaaaaaatgcccgtgcgttgcaatcggtgaaggctattttaattttattattgttatacggtttagctaaggtgaaattcactacgggaatttgcttggatatatgttagaaaatcatgagctgcaattaggagtacgactcatgtctcaagttagtatgcgaattttttttaaagagatttcttatatgactcctgtatttccaaaagcgaataaacttaaaaaaaccaactcaaacacagatctgtatttccaaaagcaaacaaacttaaaaaccgactcaaacacggatgacgtacgaaagtaccggcaaaaacatcttcaatttttataatagtggagatttacttgattggaccaaatattggactattccataatattagaaaatatcatggaacaatttgtaaaaactgctaaagcaatagcggggtggcagattcattgccaccaccacttgaggcttttaaataagtttatatattggttaattgccacgttaatttctaggttattttttagggcaaagcagggctaaatttattacttggagaatatgatggatatgcttccgagctttttgctggcctatgttatcaagaattcaagagatgtctttctaaaataaaggaccgaaacctgcgatttggtgacacaaaataccttgcatgcctttttttttttttgtaattctggaccctaaaaatgctaaattttgccccctttttattttttttctttgtacacattgtttggaaagtctactcacgattgcctttataatttgaagttttgaacctaaccagcgagaaaatggaaatctaatggactacttgggttgccttagtggttgtatttttgcttggatgggttctggaatttttgtccacctaccatctttgtttaacaattaacatgtcaatttgaccgcagatatattgtttactgttgtttcacttgtctgcagatatattgtatgactcgtggtcaccggcgatgaccgttagttctgtttgtatcagtatcttgtccatgttgtcaagctcaccagcaaaggttatagagcttcactgtgtcctctcctgtttaaatggagatcatgcatctgaccatattatatgtttattatatgttggtgcagcaacgtcctgccgacaatgatcgctatgtcaggaactgccgcaatgggaggtcgccgaaggagaccaggtggtggtttcatgatgacaaagtgtgattggttccaacttccggttggcttctcctcagcaacccttttacccgccaccctacctttacatggcgtcctccatgggagatgatttaggcatatttttaagcgatctatttgaccgcaaattaacatgcctttgtggtttgtaaatgaatgtgaacctgtatcgaatcctagacttattaattactataccttggatatatagaataattacatgtgtatcttgcttattgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0681400, RefSeq:Os03g0681400