Os10g0339400

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Revision as of 08:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0339400| Description = IQ calmodulin-binding region domain containing protein| Version = NM_001070914.1 GI:115481571 GeneID:4348352| Length...")
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Gene Name

Os10g0339400

Description

IQ calmodulin-binding region domain containing protein

Version

NM_001070914.1 GI:115481571 GeneID:4348352

Length

7011 bp

Definition

Oryza sativa Japonica Group Os10g0339400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:10167754..10174764

Sequence Coding Region

10167756..10167887,10168152..10168271,10168852..10168950,10169339..10169560,10169838..10169977
,10170097..10170208,10170377..10170427,10170507..10170596,10170753..10170923
,10171019..10171171,10172130..10172306,10172401..10172538,10172651..10172721
,10173095..10173194,10173680..10173736,10173825..10173881,10173975..10174055
,10174138..10174220,10174331..10174466

Expression

GEO Profiles:Os10g0339400

Genome Context

<gbrowseImage1> name=NC_008403:10167754..10174764 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:10167754..10174764 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>agatggcggcttcatcggacttaccagcaatctcattcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctcagttatcaaagagcagaaagctgctttggtgatacagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaaatggctgcaaatgaagcaggtgcactgcgtgaggcgaagaataaacttgagaaaaagttggatgatcttactctgagactaactctggaaaggagactgcgggctgctggtgaggaagcgaagtcagtagaaatattaaagcgcgacaaactgatagaatcattaagtgccaaatgtgctgctgccaagtcggctgctcaaagcgaacacgacaaaaatctgctactccagaggcagttggatgattcattgagagagataactatgttgcggagtagcaagattatgacagcagaagcagaaagggagaactccaatctgaagaacttagttgaatcattgtcaaagaataattcatcacttgaatatgaactcacctcagctcgtaaaggtagtgatgctacgatgaagaaattgaaagacgtagagggaaaatgcaaccatctccagcaaaatttggacaaattgcaggaaaaacttacaaacatggaaaatgaaaatcatgttcttaggcaaaaggcattaaacatgtctccgttgaacaatatgcccatgactacaaaggcttttcctcagaaattcgctacaccgattgggcttccaaatggcgagcagaagcacggatatgaaacaccaccaccagcaaaatatctcgcttcacttccacagagtttaactagatcaaggagaaccaggatgcctgttgaaaggcaggaggaaaatcatgaaatcttattacgatgcataaaggaaaatctaggattcaaggatggtaaaccagtcaccgcatgcattatctacagttgccttttacactggcgtgcttttgaatctgagaggactgctatttttgatcatgtcattgaagccataaataatgttctcaagggggaagaggctgacggtagattaccttattggttgtccaatacctcttcattgctatgccttctgcagaagaatttacggtcaaatggattatttgctacaccatcccgcaggtctggtggaactctagggattggtgacaagatagtgcaaacactcagatctccttcaaagcttatgggacgcagtgataatcttggacaagtggatgctcggtatccagccatattattcaaacagcaactaactgcgtgtgttgaaaagatttttgggcaacttagggataatctgaaaaaggaaatatcaccacttcttagtgtctgcattcaggctccaaaatcatcacgtgcacagcctggaaaagcaaccaaatcacctgggattggtgctcaaccaccatcaaactcccattgggacaatattgtcaaatttcttgacctgcttatggacactttacatgaaaattatgtgccatcattctttatacgtaaacttatcactcagctattctcttttatcaatatacagctttttaacagccttcttcttcggcgtgaatgctgtactttctccaatggggaatatgtcaaagccggtctgtcattgctggagaaatggattactgatgccacggatgagtttgcaggaacatctatgcatgagctaaattatatcagacaagctgtcggatttttggtcatacatcaaaaaaggaagaagaagcttgaggagattaggaacgaactttgcccgaacttgagtgtacgccaaatatacaggatatgctcaatgtactgggacgacaaatacaatacccaaggaatatcaaatgaggttgtttctgcaatgagggaggaagtaaacaaagatactcagaatctcgtatcaaattcctttttattagatgacgacttatgtataccgttttctacagaggatttgtcaattgccatccctgcaatagattatgtagatatagaacttccagaatctcttcatcactatgcatcagtacagctcctactcaagcatcatgatccacagcctgtctaa</cdnaseq>

Protein Sequence

<aaseq>RWRLHRTYQQSHSAALLIQSCIRGFIARHYFSVIKEQKAALVIQ SLWRKRKVIILFQQYRQATVAIQCAWRQKVARRELRRLKMAANEAGALREAKNKLEKK LDDLTLRLTLERRLRAAGEEAKSVEILKRDKLIESLSAKCAAAKSAAQSEHDKNLLLQ RQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNNSSLEYELTSARKGSDAT MKKLKDVEGKCNHLQQNLDKLQEKLTNMENENHVLRQKALNMSPLNNMPMTTKAFPQK FATPIGLPNGEQKHGYETPPPAKYLASLPQSLTRSRRTRMPVERQEENHEILLRCIKE NLGFKDGKPVTACIIYSCLLHWRAFESERTAIFDHVIEAINNVLKGEEADGRLPYWLS NTSSLLCLLQKNLRSNGLFATPSRRSGGTLGIGDKIVQTLRSPSKLMGRSDNLGQVDA RYPAILFKQQLTACVEKIFGQLRDNLKKEISPLLSVCIQAPKSSRAQPGKATKSPGIG AQPPSNSHWDNIVKFLDLLMDTLHENYVPSFFIRKLITQLFSFINIQLFNSLLLRREC CTFSNGEYVKAGLSLLEKWITDATDEFAGTSMHELNYIRQAVGFLVIHQKRKKKLEEI RNELCPNLSVRQIYRICSMYWDDKYNTQGISNEVVSAMREEVNKDTQNLVSNSFLLDD DLCIPFSTEDLSIAIPAIDYVDIELPESLHHYASVQLLLKHHDPQPV</aaseq>

Gene Sequence

<dnaseqindica>3..134#399..518#1099..1197#1586..1807#2085..2224#2344..2455#2624..2674#2754..2843#3000..3170#3266..3418#4377..4553#4648..4785#4898..4968#5342..5441#5927..5983#6072..6128#6222..6302#6385..6467#6578..6713#ggagatggcggcttcatcggacttaccagcaatctcattcagcagctcttcttattcaatcctgtattcgaggatttatcgctcgccattatttctcagttatcaaagagcagaaagctgctttggtgatacaggtgtgtccctcctcttaagtttcaacttggttatctggaacagtgctaggatactaaataaataattggtaagctctctttagaagtcatacgcatgttccttaatttgttgttgggctgttggctaaggtaagtctagactaattagaatattaatttcataacttgggatggaatgtattgtgatgctatcaattgtttatatgagaaaaaacagactgatatggttgaattttcaacactgatttctgttggcaattgcagtccttgtggagaaaacggaaggttatcattcttttccaacaatacaggcaagccactgtggcaattcagtgtgcttggagacagaaagttgcaagaagagaactaaggagactcaaaatggtaaattctttctgtgctattctatatataatcttttggcgatttttgagccgtattgcctattctatacataatcttcctccacatcctcatgaggatgcacatttttgtgtattgaaatgatctggtccaatttacctttctagttactctgctttgcttcctttgtgtcatctggcaggttttattatcctgtgtacagactagttttgtttctacccttttattttcatgcattgtgaatactctaggcttagttcgtttctatgtatagaggttagctactacctcgttatttgtgggcatgctccctgaacaaaatggtgtgtgtgtgtgtctatatatatatatatatatgtatatatatatgtatatatacatatatatatgtatatatatgtatatatatatgtatatatatgtatatatatatatatatatatatatatatatattcaagtttgtagtagttaatactcaatttaccatgtgctaatggctcgcctcattttactcccatgtgaaaaactaacccaaaccgttcatttgaacacagccttatgcttgttttatgttataggctgcaaatgaagcaggtgcactgcgtgaggcgaagaataaacttgagaaaaagttggatgatcttactctgagactaactctggaaaggagactgcgggtaagtgttgtatatcacttttacctttgtgctctatttgttaattactacctccctcccaaaatataacaacttttagctacgaatttgaacatgcacttgtccagattcatagctaaaatttgttattttctctgacggagggagtaatacttaataatacttactgttgagaggagaccgcacatttatatattttaccaatatatgcttgttcctaacattattatgacacttatatctgttatttggtatttaatgcttccataccattaagtcacatctagagattaatctaaatgtttcagaaaccaattgtctgtgaactttattttcatattcaataataatatatttcacctcatgggacatgaactttaaaatgcaggctgctggtgaggaagcgaagtcagtagaaatattaaagcgcgacaaactgatagaatcattaagtgccaaatgtgctgctgccaagtcggctgctcaaagcgaacacgacaaaaatctgctactccagaggcagttggatgattcattgagagagataactatgttgcggagtagcaagattatgacagcagaagcagaaagggagaactccaatctgaaggtttgaggcttcccttaccattttaatcgccatgatgcttggttgacaacacagttattctctgctgtttttttaacacctttcattgcatatctcttatttaatgattttttccattgtctaattgttgtacttctaatgtgataaaaccaccacaataatttttttatttagtttgtaccattagttttccttgctgctgtaatttgcctgttggcaatatgcttttttttcctatttacctttggctgaaataattctatattactctgtgcagaacttagttgaatcattgtcaaagaataattcatcacttgaatatgaactcacctcagctcgtaaaggtagtgatgctacgatgaagaaattgaaagacgtagagggaaaatgcaaccatctccagcaaaatttggacaagtatgttttcccttgcatttattagaccgtagagtgctagaagaatatgtatagtattctaaggtttatttctgctcttctagtattgggatgcaaagttactggtttgctaatttcagattgcaggaaaaacttacaaacatggaaaatgaaaatcatgttcttaggcaaaaggcattaaacatgtctccgttgaacaatatgcccatgactacaaaggcttttcctcaggttcttttctttgctctttaattgcttcagttatctgttttttgatgttaatatttgatccaacatttaaaggttcttttattgttgatactcatatttgcgacagtgagtactgatctagtttgcatctcttcttaaatagtttactgacatgctgcttgaatgcagaaattcgctacaccgattgggcttccaaatggcgagcagaagcacggatatgtaagcctattcttttgattgacgtacagaactgctatagattagtctgacatattggatctaaaattttgaattgtaggaaacaccaccaccagcaaaatatctcgcttcacttccacagagtttaactagatcaaggagaaccaggatgcctgttgaaaggcaggaggtaaattccacattacgttgttcatttgttaatttttgcttgttctagctctgttgataccttcttagataagatggccaataatttgttctggatgacgtgacattattcaaaaaaatttcttatgcatcttggtgatgattttgtgtcatgcaggaaaatcatgaaatcttattacgatgcataaaggaaaatctaggattcaaggatggtaaaccagtcaccgcatgcattatctacagttgccttttacactggcgtgcttttgaatctgagaggactgctatttttgatcatgtcattgaagccataaataatgttctcaaggtaaaattactttagacccatctattttgctgtttgtgctagatgttatttgtggatgtcaaataatcatggaatttctcctgttcttactccagggggaagaggctgacggtagattaccttattggttgtccaatacctcttcattgctatgccttctgcagaagaatttacggtcaaatggattatttgctacaccatcccgcaggtctggtggaactctagggattggtgacaagatagtgcaagtaaggaaccctgaacattatggatcaatttcttatcagtactatattcttcccaaaataagttcatttttcacccattccgcacataccaatacaaaactaaaaaagattagaatgccctctctttatcaaatcctgtagcaattattccccactttatctactcctaatgtatctatcccctactttcacaaactctgatgcaatgatcgctcgaaaatgaacttattttgggacaaacgaaaggatcccaaaatgatcttattatgggacggaggaagtattgaattatgcttagtgtgctgacccatatgaagtgatattttcaaagcatgtctagtttaacatatattattttatcatgtctcatgtttatgcataattatcggatgtgacctctctattcacccaatcaacaactcaagatattgggtcggttggagctgtttgttacagatggggttcctggtttcattttagtggcaaaaatagtaaggtcttaaatagcttatttggttcaactggaataagtagctaccttagttggttaccagacagatgaagcacacatttttagaaactttaagctggtggagcaagccagcagctgtatacttctatgctgtcagttcacgccaaaacagtctggttggactgtcatggtgaagctccttccccctcctttttgacaggccactctactgtgctggggcagatctcataaatcatgtgtgcctgaagagagctatgctgcttcccataatgggggaaatggaaacatcatgctcttcaagtattcttaatttgcacaactgtataagcgcagtaacatattttactggtatagaaatttgttgtgcaattttttttttccttattttttttttaaaaaagagttgggtacgataaaattattttttcctctggtactgaaatggctcctttttgtttcttgcagacactcagatctccttcaaagcttatgggacgcagtgataatcttggacaagtggatgctcggtatccagccatattattcaaacagcaactaactgcgtgtgttgaaaagatttttgggcaacttagggataatctgaaaaaggaaatatcaccacttcttagtgtctgcattcaggtacttgaccacttaaaaatctggatgactaatagatatgttggatgcctagatatgcccatacaccctctcccatctgaaaattttcatgtaggctccaaaatcatcacgtgcacagcctggaaaagcaaccaaatcacctgggattggtgctcaaccaccatcaaactcccattgggacaatattgtcaaatttcttgacctgcttatggacactttacatgaaaattatgtgagcattttcttaaactttttttctttatcaatggatttataatcacctggaaactttaatgaagggctctcctggttaatctaataacctaatttcgtgtttgctgcaggtgccatcattctttatacgtaaacttatcactcagctattctcttttatcaatatacagctttttaacaggtaatttcctcaattttgaaatgtatacttacatttacatataagcaagcaaaacaatttacacatggtaaccaatcaatgctattgagcgaatagttattccttggatgatagaattatatcttcattagttttgcaaatagcatggtcattgcaccttttatttatgatataagcaaagggcttttttgacaatgaagtgatggaattttgttggttaaaagttataataggagatggcggtagaattactttggaaaaaaccagtgctgtattatgtttgaaaattgagataacgttgtaggtaaaaataaaacaagaaatcctatggtttgtaatgatattaacagtccttttccctttgttcgatcagccttcttcttcggcgtgaatgctgtactttctccaatggggaatatgtcaaagccggtctgtcattgctggagaaatggattactgatgccacggatgaggtaggtgtttgcattctgcttgtgaagttgttttacactttgagaagggactatgaaaagacctgatgaaattatttagcttatcctgctatattttcttcctagttcactgatatacctcgtgttcaggggcggagacagcgtgggggcgtctttagacccccctaccccctaatataccattagagactccataataccctcctaaaattttaatccatatatttgtagatgaggggctaatatagactttgtttgaggttgttagaaggcccaaaaggctaagaagacccaaaaaatcctaacccaaccctaaatttctcttagttgcttttggtcattttggtttagctcccgctataattttatcctggctccgtcactgctcgtgttttaggaacttaggtgcaagcaaatattgtacattttattggggctccgactttttcacattgcttactagtttattatccttgtactttcagtttgcaggaacatctatgcatgagctaaattatatcagacaagctgtcggatttttggtaatttcttgtgcatgctgcatttgtttccatgtttctgtgcttcttttgtatgtttacctaacatctcactaattgcatcacacaggtcatacatcaaaaaaggaagaagaagcttgaggagattaggaacgaactttgcccggtaagactactgcatgtatgacctctgattttgtgcatagccattatttatgccataccttaactagttattttctgctcctgttatttgtagaacttgagtgtacgccaaatatacaggatatgctcaatgtactgggacgacaaatacaatacccaaggaatatcaaatgaggtaatctcttttggtttagaggctttccattttttagagattcactatgattttttattctgaaaactttgggatctggcaggttgtttctgcaatgagggaggaagtaaacaaagatactcagaatctcgtatcaaattcctttttattagatgacgacttatggtatgcgtgatttcctggttaaaattttacagccaaatcattactatccttattgtagaacatgctttaccgtctgttgatttgcacttgtatgtgatgctttctttcagtataccgttttctacagaggatttgtcaattgccatccctgcaatagattatgtagatatagaacttccagaatctcttcatcactatgcatcagtacagctcctactcaagcatcatgatccacagcctgtctaatagtatggttggggttgccttgaagattcgtttatttttattcccaggttttagtggcgttatcttttgaactgttgtatggttgttaggcttgtagtcttaagtttatccgggggtgaaaaggttgtaacagaaatggtaggatgtcatttcaaagcaacaattgtttctaggtgaaaattaaaccaccgtggaccctgggtgtccacctgtcctatgttcagatcatcagatgtacatagtgttgtagagactgttaagcatttgccatggaaaaataactatcttctgctgcgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0339400, RefSeq:Os10g0339400