Os03g0732100

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Revision as of 12:57, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0732100| Description = Similar to Homeodomain protein JUBEL1| Version = NM_001186700.1 GI:297722530 GeneID:9266975| Length = 5111 bp| Defi...")
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Gene Name

Os03g0732100

Description

Similar to Homeodomain protein JUBEL1

Version

NM_001186700.1 GI:297722530 GeneID:9266975

Length

5111 bp

Definition

Oryza sativa Japonica Group Os03g0732100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:30766877..30771987

Sequence Coding Region

30766877..30768254,30768756..30768805,30769615..30770000,30771799..30771859,30771967..30771987

Expression

GEO Profiles:Os03g0732100

Genome Context

<gbrowseImage1> name=NC_008396:30766877..30771987 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:30766877..30771987 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaatagcggcgccaccgtgtcagccagggcagaccaccacgttcgtcataagccaacccaccagcagcaagagctccccggcggcgatcgtcgtccggccgccggccacggcgagttcttcttctatgtcccactcccagggtttccaccagcccagcagcggcgccgtcttcggcttctcctccgatggcttcgacggccgccccggctccggccaagaccaccagcagcacgagcagcagcagcagcagcacgtggcgcagcagagccgccgcgacaagctgagggtgcaaggcttcgacccggcggcggcggcggcggggcacgggttgctccccatcgagggcgacgagcatggcgcggagcccggcgccatgtacgaccacgcggaggcggcggcggccggggcgtcgaacatgctctccgagatgttcaacttcccgtcgcagccgccgacgggcccctccgccaccgagctgctcgccagccagatgaacgccaactaccggttcgggttccggcaggcggcgggtttggccggcggcgaaggcggttggttcggcggcggcggcgcggccggccggactgggttggtgctcggtggggccagcttgggttcgttaggtgagacgtcgtcgccgaagcagcaagcgagcggcatggcgggcctcgccgctgacccggccgcggcgatgcacctgttcctgatgaacccgcagcagcagcagcagcagcagtcacggtcgtcgacgtcgccgccgccgtcggacgcgcagtcggcaatccaccagcaccacgaagcgttccaggcgttcggcggcgccggtgcagcagcgttcggcggcggcgcggcggccggcgtggtggaaggccaggggctctccctctcgctgtcgccgtcgctgcagcagctggagatggcgaagcaggcggaggagctgcgcgtccgcgacggcgtgctctacttcaaccggcaacagcagcagcagcaggcggcggcggcggcggcgtcggtgcagcagcagctcccgatggcattgcacgggcaggtcggcgtgctggggcagcagctgcacggcggcgggtacggcggcccggcgggcgtcgccggcgtcctccgcaactccaagtacacccgcgcggcgcaggagctcctcgaggagttctgcagcgtcggccgcggccagatcaagggcggcggcggccgcggctccgcccccaataaccctaactccagcaaggccgccgcctccagctccggcgccgcccagtccccctcgtcggcgtccaaagaaccccctcaactctcccccgccgaccgcttcgagcaccagcgcaagaaggccaagctcatctccatgctcgacgaggcacgtgtgatacgtgttgcgtcactaccaggtgaaaaagtcttttatatgggagtggacaggaggtacaaccactactgcgaccagatgcagatggtggtgaacttcttcgactcggtgatggggttcggggcggcgacgccgtacacggcgctggcgcagaaggccatgtcgaggcacttccggtgcctcaaggacgcgatcgcggcgcagctgagggggacgtgcgaggcgctgggggagaaggacgccggcacggggtcggggctgaccaagggggagacgccgcggctgcgggccatcgaccagagcctccggcagcagcgcgccttccaccacatggggatcatggagcaggaggcgtggcgcccccagcgcggcctccccgagcgctccgtcaacatcctccgctcctggctcttcgaacacttcctccacccgtacccgagcgatgcagataagcacctgttggcgaggcagaccgggctgtccaggaaccagatgcatatatatgtgatctga</cdnaseq>

Protein Sequence

<aaseq>MGIAAPPCQPGQTTTFVISQPTSSKSSPAAIVVRPPATASSSSM SHSQGFHQPSSGAVFGFSSDGFDGRPGSGQDHQQHEQQQQQHVAQQSRRDKLRVQGFD PAAAAAGHGLLPIEGDEHGAEPGAMYDHAEAAAAGASNMLSEMFNFPSQPPTGPSATE LLASQMNANYRFGFRQAAGLAGGEGGWFGGGGAAGRTGLVLGGASLGSLGETSSPKQQ ASGMAGLAADPAAAMHLFLMNPQQQQQQQSRSSTSPPPSDAQSAIHQHHEAFQAFGGA GAAAFGGGAAAGVVEGQGLSLSLSPSLQQLEMAKQAEELRVRDGVLYFNRQQQQQQAA AAAASVQQQLPMALHGQVGVLGQQLHGGGYGGPAGVAGVLRNSKYTRAAQELLEEFCS VGRGQIKGGGGRGSAPNNPNSSKAAASSSGAAQSPSSASKEPPQLSPADRFEHQRKKA KLISMLDEARVIRVASLPGEKVFYMGVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYT ALAQKAMSRHFRCLKDAIAAQLRGTCEALGEKDAGTGSGLTKGETPRLRAIDQSLRQQ RAFHHMGIMEQEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHLLARQTGLSRN QMHIYVI</aaseq>

Gene Sequence

<dnaseqindica>1..1378#1880..1929#2739..3124#4923..4983#5091..5111#atgggaatagcggcgccaccgtgtcagccagggcagaccaccacgttcgtcataagccaacccaccagcagcaagagctccccggcggcgatcgtcgtccggccgccggccacggcgagttcttcttctatgtcccactcccagggtttccaccagcccagcagcggcgccgtcttcggcttctcctccgatggcttcgacggccgccccggctccggccaagaccaccagcagcacgagcagcagcagcagcagcacgtggcgcagcagagccgccgcgacaagctgagggtgcaaggcttcgacccggcggcggcggcggcggggcacgggttgctccccatcgagggcgacgagcatggcgcggagcccggcgccatgtacgaccacgcggaggcggcggcggccggggcgtcgaacatgctctccgagatgttcaacttcccgtcgcagccgccgacgggcccctccgccaccgagctgctcgccagccagatgaacgccaactaccggttcgggttccggcaggcggcgggtttggccggcggcgaaggcggttggttcggcggcggcggcgcggccggccggactgggttggtgctcggtggggccagcttgggttcgttaggtgagacgtcgtcgccgaagcagcaagcgagcggcatggcgggcctcgccgctgacccggccgcggcgatgcacctgttcctgatgaacccgcagcagcagcagcagcagcagtcacggtcgtcgacgtcgccgccgccgtcggacgcgcagtcggcaatccaccagcaccacgaagcgttccaggcgttcggcggcgccggtgcagcagcgttcggcggcggcgcggcggccggcgtggtggaaggccaggggctctccctctcgctgtcgccgtcgctgcagcagctggagatggcgaagcaggcggaggagctgcgcgtccgcgacggcgtgctctacttcaaccggcaacagcagcagcagcaggcggcggcggcggcggcgtcggtgcagcagcagctcccgatggcattgcacgggcaggtcggcgtgctggggcagcagctgcacggcggcgggtacggcggcccggcgggcgtcgccggcgtcctccgcaactccaagtacacccgcgcggcgcaggagctcctcgaggagttctgcagcgtcggccgcggccagatcaagggcggcggcggccgcggctccgcccccaataaccctaactccagcaaggccgccgcctccagctccggcgccgcccagtccccctcgtcggcgtccaaagaaccccctcaactctcccccgccgaccgcttcgagcaccagcgcaagaaggccaagctcatctccatgctcgacgaggcacgtatccatctctcttcccctcctgcatgcatggctttctccatatattctcctccaccgacacatcgccgccatgcatccgccgacgtcgacgacgacgacgtagagctaccactccaatggcggcggcggcgatgtcactggcaaccttttttgggttgtcgtcacggcgcgagtcccaagagataagactagttcttctcaagtccatctctctactaatcccccaatcatagcaacatcatcgatccccaagctcgtagcccgcgacagaattttcggtttcttttttgtggcggttgttggcaccgcgtgcgtcttgattgacaccataaattaagttttcaccatggtttgccaatggcgattagtttaagccgcatttctctttccatatcggctagggcctccacaaggggaaagaagtacggctcccctttcgccccttagctgctgctgctgctaatatcatattgagagaccccatgatctgcatatgtaggtgtgatacgtgttgcgtcactaccaggtgaaaaagtcttttatatgggagtaagatactaagctacttgcatgcgtgagatagctaagctatagcttaattatgattttctggtgtgtgtcgtcaattgggttggtgcaaaggaggcattcaattaatccatatcagtctatttcaaacttgcaattggagttcatgcacagtgaggaacaactactgggagtacgtactggattgattttccattatcgaaaagagaagatcagagtgagagtgagcaagcagctagcagtgtcacatgtcaatggcgatcgatcaatcgatcgcaactactagcttggttgagctagctggtagtagcaagcaagagcacaggaacaaagcggcacatgcgagtgttagccgcgtgggtgtgcaaaaatgcatggctatagctattctccaaaacggcggtgggcctcatccgtcgttggggcgttcgtttgttcgtagtttagcttagctagcttgcacccattttccttcataattattgtgccagcgacatatgctgtcttaacttctgcgccccaatttttgtttctttgtgtctccttgtgtcgatcgatcctccaagctactatactatatacctcgagtaattatttctcattacctgggtttgattttatttgattcggtggttgtctttgatttttttttttcaactttgattcggtttttacagttagctaggtcgaggtgtataggtacacgattgattgattgatgattactccatatggatgaacaaaaaaaaatgcatgattgatatggttgggatggtgtggtgatgatggatggatgtggatcgatgcaggtggacaggaggtacaaccactactgcgaccagatgcagatggtggtgaacttcttcgactcggtgatggggttcggggcggcgacgccgtacacggcgctggcgcagaaggccatgtcgaggcacttccggtgcctcaaggacgcgatcgcggcgcagctgagggggacgtgcgaggcgctgggggagaaggacgccggcacggggtcggggctgaccaagggggagacgccgcggctgcgggccatcgaccagagcctccggcagcagcgcgccttccaccacatggggatcatggagcaggaggcgtggcgcccccagcgcggcctccccgagcgctccgtcaacatcctccgctcctggctcttcgaacacttcctccacccgtatgtcccattcttcttcccctccctcctttacatacatacatcttcggtctctgtcgtcaggcaggcggaattatggtatctcctacttcctccgtttcaaaaaaacgattctagaactggatgtgacatactctagtacaatgaatctggatagaggtatatccagattcgtagtactaggatatgtcacatccagtactagattgatttttttatgggatggaggaagtatttcgtttttaataacaggaatggtttacatctctggcttctagtgttgcacgtacagctagaataatcccatatagccatgcatgcattgaacacttcctccaaccgtatgtccctcctccctctccttacatatatctccggtctcaacccgtatgtcccttccccctctccttacatatagatagacggaattttagtatatttttttttcatcctctgctgttaggtttgtagccaaattcttccaagcatactatacgtgatcagaattttatctctattttctttttaataattgaaaggatttacatcttcgggccagggccgttagacacgcagctagctagctagaatcccatatggccatgcatgcatggagctaaggcagctgttgttgccggcagttgcatgttaggatatgatcatttggtggcgatgttgagctgcattgcgctgtgcatggtggtgcatgccgtacgttggcggcatggtaggagcgagtaggggagggggagtagtagtaccacactgcactcatcacgggcagcttctgctttgcttttgctgcttctctctctctctcgcctctctttctggttagctgctgactgctgctgctgctacgctttagcaaaagcagtaattttttcgagatctacgctataaatcaggggcagcatgccggggactgtacatgtgcgcctgtgtgtatattcctctcatcccctcccttttgcttccgtcctctcccagattttactttcccatcattgcagaaatttaccttttttagttttactgcggttagtgtacgtatgcacgtagcagcagcagcagctgctgcagcgagcacagtacaccaggaattcttcctccatctcctttgtgccaagctttagagagtgcccatgcaaacaaaagcttagctcagctacatgcccctacaccgtactacatggctctctctgcactgcacagcctgcatatctgcaaaatattctgcgtgcctaggagagcctttctgcaatgccttgccgtgccacgcatgcagcagcatgatctaggttagtttctgagcttttttacagcatattttttcaggctttcagctcccctcattcatcctgcctgcctgtaaaacccagatctgatgctcactttgcgcattgctgtgatctgcgagaggatcaagatggcagccgaggggaatatatctaggaatccgttttgcttctcgttgttgctgttgcatcatattctttgcatgcagggggcaagccagccaccacgcatgcatgaatagctagcagagtggtagtaacacatgcatacatatcagtgtgttttgtgcgcaattataatgcgtctatgattggtgaatagtagtgctcctgcgcagaatgcagctagctagctagctgctgttcctgaatgctgctgctgcagtatcagtagatagtgcatgcagattagctgcaagaaatgcagccttttggcgagtggttttctctgtgtgctcacgcgtgatttcccgtgctgtgtgtgtctgaatgttatgcaggtacccgagcgatgcagataagcacctgttggcgaggcagaccgggctgtccaggaaccaggtttgtacacttgctttgctgctgcatgcatgcaactgttgcactagctgtgtactattgcgtggaatttatcagattctttttctttctttctttcttggctgcagatgcatatatatgtgatctga</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0732100, RefSeq:Os03g0732100