Os10g0351700

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Revision as of 08:35, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0351700| Description = Similar to Tapetum specific protein (Tapetum-specific endoxylanase)| Version = NM_001070950.1 GI:115481643 GeneID:434...")
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Gene Name

Os10g0351700

Description

Similar to Tapetum specific protein (Tapetum-specific endoxylanase)

Version

NM_001070950.1 GI:115481643 GeneID:4348392

Length

3611 bp

Definition

Oryza sativa Japonica Group Os10g0351700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:10984384..10987994

Sequence Coding Region

10984433..10984481,10984665..10984709,10985252..10985494,10985610..10985776,10985869..10986249
,10986615..10987115,10987450..10987800

Expression

GEO Profiles:Os10g0351700

Genome Context

<gbrowseImage1> name=NC_008403:10984384..10987994 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:10984384..10987994 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaaagtactggtgctctccttgatatgtatttcactctgccaaggatgggtggtgcaatctttagaatatgatcatacagcaagtattgagtgccttcgcgatccgatgaagccgctgtacaacggcggcatcatccagaacggcgagttcaacagcggcctcatgggctggtccacgcaccgcgacatcaaggccggcctgagcagctcgccgtccggcaacaagttcgccgtggtgcagcgcgccgactccctctccggcgccgccgtgccgtcgcgcagcgtctaccagaagatccagctgcagggcgacacccactactcgctgtccgcgtggttgcaggtgtcggccggcgccgcgcacgtgaaggcgttcgtcaagacgcccaacggcgagcgcgtcgtcgccggcagcgtctccgcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactcctccggcccagggcagatcttcttcgagagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcgacgagtgggacgcgcaccggcagcagtcggccgccaaggtgcggaggagcaccgtcagggtggtcgtccgcggcgccgacggcgcgcccatggcgaacgccacggtgatcgtcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacctgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgagatgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgccatgctcaagctcgcccaaaagtacaacatcaagattaggggacacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctggaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgccctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaaccaggtgaagttcttggagcaggtgctgagggaagggtacgcgcacccgtcggtgaacgggatgataatgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttcaagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcacaagacggcggcgacgaccggcgccgacggcgccgtcgagctcgacctcccacacggcgactacaacctgacagtgagccacccgtccctgggaacgaacgccaccgtccgcgccatgacggtggacgccgcgtcgttggcgtcggagcgcctggtcaacattaaggtctag</cdnaseq>

Protein Sequence

<aaseq>MEKVLVLSLICISLCQGWVVQSLEYDHTASIECLRDPMKPLYNG GIIQNGEFNSGLMGWSTHRDIKAGLSSSPSGNKFAVVQRADSLSGAAVPSRSVYQKIQ LQGDTHYSLSAWLQVSAGAAHVKAFVKTPNGERVVAGSVSAQSGCWSMLKGGMTAYSS GPGQIFFESDAPVDIWMDSVSLQPFTFDEWDAHRQQSAAKVRRSTVRVVVRGADGAPM ANATVIVELLRAGFPFGNALTKEILDLPAYEKWFTSRFTVATFENEMKWYSNEWAQNN EDYRVADAMLKLAQKYNIKIRGHNVFWDDQNSQMKWVTPLNLDQLKAAMQKRLKSVVT RYAGKVIHWDVVNENLHFNFFETKLGPNASPMIYNQVGALDKNAILFMNEFNTLEQPG DPNPVPSKYVAKMKQIQSYPGNSALKLGVGLESHFSTPNIPYMRSALDTLAQLKLPMW LTEVDVVKGPNQVKFLEQVLREGYAHPSVNGMIMWAAWHAKGCYVMCLTDNSFKNLPV GTLVDKLIAEWKTHKTAATTGADGAVELDLPHGDYNLTVSHPSLGTNATVRAMTVDAA SLASERLVNIKV</aaseq>

Gene Sequence

<dnaseqindica>50..98#282..326#869..1111#1227..1393#1486..1866#2232..2732#3067..3417#atcgtcttcgttagcagtgagagtgacagacgacacatagaaggttttcatggagaaagtactggtgctctccttgatatgtatttcactctgccaaggtcagctggtttgtaaattatgttggttttagtcgaattcctgatttaatgttttcaaaatgtgcatggtcttttcctcaaaaaaaatgcgcatggttttcttgttcgtttttgcatttgttttgatcacataatttcatcttgaaatgtcgttgaagattaatgtatctattcttgatgtaggatgggtggtgcaatctttagaatatgatcatacagcaagtattgaggcaagtgattttgtttaattgttctctttgtatatatcgctcttttctcaaacagatgccatatgtgagattattggcaaaatgtgcaaatctctgactttgttaaacgtttttatctccgtctcgtctcacagattttaaattgcaaatcgatagttggtattctcgtcttctgctatctataaaacttgataatttgtttattaaaatcagttgtattctagttttaaaatgtaaggctctggatcgttttatgccaagattgactgggatgccaaaattgtttggtttgccaaaaattgattagagctgggctgttaaaaaacgcaaaattattttattattcccaggaaattaacaccctgagttaatttggttcaatcaaaatccaaatcactcgactattttgtaaactgaaacatctctaatcagtgaataggtcaacaaaaagcaaaatttacggcatttatgtgtaccgttaaaaaaattgaaatgttcctgtaatgttcaaacgagcttgcatgcatgccacatatctgcagtgccttcgcgatccgatgaagccgctgtacaacggcggcatcatccagaacggcgagttcaacagcggcctcatgggctggtccacgcaccgcgacatcaaggccggcctgagcagctcgccgtccggcaacaagttcgccgtggtgcagcgcgccgactccctctccggcgccgccgtgccgtcgcgcagcgtctaccagaagatccagctgcagggcgacacccactactcgctgtccggtacgtacgtgcaaaactagatagcactcgagcacatatgcatgcgtgcgtgcgtgcgtgcgtggtccccgtcgtctgacgagccgcgcctcgccggcgcgccgcggcgccgcagcgtggttgcaggtgtcggccggcgccgcgcacgtgaaggcgttcgtcaagacgcccaacggcgagcgcgtcgtcgccggcagcgtctccgcccagtccggctgctggagcatgctcaagggcggcatgaccgcctactcctccggcccagggcagatcttcttcgaggtgacccagccactcgatgcaatttcgtcgaacacatcgccggcgtacgttccagccgttccatcgatctcaactttacataatgttcgcagagcgacgcgccggtggacatctggatggacagcgtgtcgctgcagccgttcacgttcgacgagtgggacgcgcaccggcagcagtcggccgccaaggtgcggaggagcaccgtcagggtggtcgtccgcggcgccgacggcgcgcccatggcgaacgccacggtgatcgtcgagctcctccgggccggcttcccgttcggcaacgcgctgaccaaggagatcctggacctgccggcgtacgagaagtggttcacgtcgcgcttcacggtggccacgttcgagaacgagatgaagtggtacagcaacgagtgggcccagaacaacgaggactaccgcgtcgccgacgccatgctcaagctcgcccaaaagtacaacatcaaggtcagcttgacatcggatattgacccaactgtctcacgacattcttataccagcacatgtaccttactaactacttccttcgtttataactcgtctgatattttttttagtcaaaatttttttagactcgatcaagtttttaagaaaaaaattagcaacatctacaaaatcaaattagttttattaaatttaatattaatatatttttataatatatttgttttgtattaaaaatgttagtatatttttctacaaacttagttaaatttaaagaaatttgattaagaaaaaagttaaatgacttataatatgaaacaaagagagggagtattaattttttttttgttggttgttacaaattgaagattaggggacacaacgtattctgggacgaccagaactcgcagatgaagtgggtgacgccgctgaacctggaccagctgaaggcggcgatgcagaagcggctcaagtcggtggtgacgcggtacgccgggaaggtgatccactgggacgtggtgaacgagaacctgcacttcaacttcttcgagaccaagctggggccgaacgcgtcgccgatgatctacaaccaggtgggcgcgctggacaagaacgccatcctcttcatgaacgagttcaacacgctggagcagcccggtgaccccaacccggtgcccagcaagtacgtcgccaagatgaagcagatccagagctaccccggcaacagcgccctcaagctcggcgtcggcctcgagagccacttctccaccccaaacatcccttacatgaggagcgccctcgacacgttggcgcagctcaagcttcccatgtggctcaccgaggtcgatgtcgtcaaaggacccaaccaggtaaacctgacactgatgtcattttctgcaatagtagtagtcagggtttaaaattccgcactgaaattttcgaaatttcggttatatcatgaacccaatcccccgataagatattatttcagcctgatttaatttttcgtgaattttggcaatattgtccaaatttgactaaattttgttcatgatttcgaaaatttctaaaatatcgctatatcggcactcccgatatgaataccgaaaacaaaagatttaaccctggtagtagtgaaaaatctacacaccaaattaagttatacattacctaataacattatgtttggcatggtggaatcaggtgaagttcttggagcaggtgctgagggaagggtacgcgcacccgtcggtgaacgggatgataatgtgggcggcgtggcacgccaagggttgctacgtgatgtgcctgacggacaacagcttcaagaacctgcccgttgggaccctcgtcgacaagctgatcgccgagtggaagacgcacaagacggcggcgacgaccggcgccgacggcgccgtcgagctcgacctcccacacggcgactacaacctgacagtgagccacccgtccctgggaacgaacgccaccgtccgcgccatgacggtggacgccgcgtcgttggcgtcggagcgcctggtcaacattaaggtctaggagagtgtgacacgtacattgtcctcgtgctagcgtgctcgattttttttttgtcaaacaattttgtacttgtttttatttccttttttgcttaattagtgaataataattggatcacttggttcagcttaatctatgtcaggtcagttatacgcctagccactgcattaatatcgcacctaactttaaaactt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0351700, RefSeq:Os10g0351700