Os03g0797400

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Revision as of 13:04, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0797400| Description = Similar to Indole-3-glycerol phosphate lyase| Version = NM_001058096.1 GI:115455920 GeneID:4334427| Length = 2875 bp...")
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Gene Name

Os03g0797400

Description

Similar to Indole-3-glycerol phosphate lyase

Version

NM_001058096.1 GI:115455920 GeneID:4334427

Length

2875 bp

Definition

Oryza sativa Japonica Group Os03g0797400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34065239..34068113

Sequence Coding Region

34065502..34065636,34065736..34065873,34065970..34066047,34066157..34066233,34067434..34067980

Expression

GEO Profiles:Os03g0797400

Genome Context

<gbrowseImage1> name=NC_008396:34065239..34068113 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:34065239..34068113 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctttcacggtcaaggcgtcgtcgccgtcgtcgccggctgcttcttcttcttcttcctcggcgccagctaagctcggagcggcgccggggagggtcgcggtcaggaagctcaccgcggcggcgacgtcgcttaggctcgatcgggcgcccgcggcgccggcgacggagcgcgggctgtcgtcggtgtcgcggaccatgtcgaggctgatggagaaggggaagacggcgttcatcccgtacatcaccgccggcgacccggacatggggacgacggcggaggcgctgcggctgctcgacgcgtgcggcgccgacgtcatcgagctcggcgtgcccttctccgacccctacaacgacggccccgtcatccaggcctccgccgcgcgggcgctctccgccggcgccacgatggacgggatcatgtcgatgctcgcggaggtgacgccggagctgtcatgcccggtggtgctcttctcctatctcggccccatcgtccggcgaggtccggccaacttcaccgccgcagccaaagaagccggcgtacaaggtctaatagtacctgatcttccttacctagaggcatgctctttcaggagtgaagttatcaagaacaacctagagctggtgctgcttactacaccaactacaccaccagacaggatgaaggcaatcacagccgcctcaggaggatttgtttacctggttagtgtcaatggagttacaggatctcgccaagacgtgaacccgcgtgttgagcatctccttcaggagattaagcaggtcactgacaaagctgtgtgtgttggctatggcatatcaacccctgatcatgttagacagatagcagagtggggtgcagatggggtgatcattggcagtgcaatggtgaggcagctgggtgaagcagcttctcccaagcaagggctgaaaaggctggagaagtatgctaggagcctgaagaatgcacttccatag</cdnaseq>

Protein Sequence

<aaseq>MAFTVKASSPSSPAASSSSSSAPAKLGAAPGRVAVRKLTAAATS LRLDRAPAAPATERGLSSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDAC GADVIELGVPFSDPYNDGPVIQASAARALSAGATMDGIMSMLAEVTPELSCPVVLFSY LGPIVRRGPANFTAAAKEAGVQGLIVPDLPYLEACSFRSEVIKNNLELVLLTTPTTPP DRMKAITAASGGFVYLVSVNGVTGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPD HVRQIAEWGADGVIIGSAMVRQLGEAASPKQGLKRLEKYARSLKNALP</aaseq>

Gene Sequence

<dnaseqindica>2478..2612#2241..2378#2067..2144#1881..1957#134..680#atcccatccatccaagcacacgcgcgcacacgcacgcacgcacgtacatcgcgcgcgccacgccacgccacgccgcggtcacaccgttccaagccactctcacacgcacgcgcgtcgccgccactacactctcatggctttcacggtcaaggcgtcgtcgccgtcgtcgccggctgcttcttcttcttcttcctcggcgccagctaagctcggagcggcgccggggagggtcgcggtcaggaagctcaccgcggcggcgacgtcgcttaggctcgatcgggcgcccgcggcgccggcgacggagcgcgggctgtcgtcggtgtcgcggaccatgtcgaggctgatggagaaggggaagacggcgttcatcccgtacatcaccgccggcgacccggacatggggacgacggcggaggcgctgcggctgctcgacgcgtgcggcgccgacgtcatcgagctcggcgtgcccttctccgacccctacaacgacggccccgtcatccaggcctccgccgcgcgggcgctctccgccggcgccacgatggacgggatcatgtcgatgctcgcggaggtgacgccggagctgtcatgcccggtggtgctcttctcctatctcggccccatcgtccggcgaggtccggccaacttcaccgccgcagccaaagaagccggcgtacaaggtaattaattaattaattactctctgttttgcacttggacattaatctttcatacaccctcgtcttttttttaaaaaaacttaatactagaatgtgacccataatggaacatcttagtactaagatgtgtctagattagtttttttttacggaggaagtatatatcagtgatgtaaaatatctaatactaataaacagttaagtacagtaactgtacagggatctgaactgtatatatagtgtatacggtacatttctgatttgcctgcacagtcattttgtgttttctgaaccaatgttgtcgttcaccttatcttgaataggattaatcttcaatcaaatcagatggtcttgagtcgttttcatttgtttttcacgtgcatagctgaggtacagcacatgtttggccgtttctggatcgatgcaaaacaccaatcactgtcctatatacataaagctagccatagattcttcaggccaagctaagccaaaaaaaatctgtgtctgaggttgtgatgtgctctccgatgagtgatcattcgaaatcatttatgtggacaagttacaagtaccattacgtaattagagcaagtttaatagtatagccaactactagttctaattcatatatggtcaatctaatagctcattcatacagtagttacatactacactattaatacctagtcccacctatcatacacacactgcgttttggagtccgtgctgcagctagctacaaatttgtagcccgctgcccttctctcttcttatttatctccttaaaatatgtttgcagctgccttatagcctgctattgtacctgctcttatgcacgtttatgcttttagagttttaggctgtgtttgagggagaggggattaagaaaattgggaatatacgcaaaacgaggtgagccattagcgcatgattaattgagtattaactattttaaatttcaaaaatggactaatatgattttttaaagcaactttcacatagaaattttttacaaaaaatacaccgtttaatagtttggaaagcgtgcatgtgaaaaacgagtgacaatctcaccaatctctccccagtctcctttgaaagaacacagccttagtattcaggcaaaattaatgcgtgctaatcggaattctaaacgcattcttttttttttgttactaataatttgcacacgtgttccaggtctaatagtacctgatcttccttacctagaggcatgctctttcaggagtgaagttatcaagaacaacctagagctggtacgtatagtatctatgttgatttcatcaacatataaccattagtaaatttgtatggtcaattaacaacaaattctggattatgttttgtggattaaaatggctgcaggtgctgcttactacaccaactacaccaccagacaggatgaaggcaatcacagccgcctcaggaggatttgtttacctggtaaagcacactagtaaatcttcagaaatcctgattaattacttaatagaagtttagcttctgacacaattgcttgctgtaaaacgtgtcatgcaggttagtgtcaatggagttacaggatctcgccaagacgtgaacccgcgtgttgagcatctccttcaggagattaagcaggtcactgacaaagctgtgtgtgttggctatggcatatcaacccctgatcatgttagacaggtgattgaattaccattttatcacaaatgtatttggtagatttcctaatcaaatattgcaaattctaaaacattattgtcaattgaaaaatggacacagatagcagagtggggtgcagatggggtgatcattggcagtgcaatggtgaggcagctgggtgaagcagcttctcccaagcaagggctgaaaaggctggagaagtatgctaggagcctgaagaatgcacttccatagaagctataaaaacaagttgctaaataatggcatgagagattaattaattaatctcttggtgatgactagctacatgcataaaagggaagctgaagctgcctttctcatagtctcatagttaactgtaccgcaaattagcactagaaagtgttatagataataagtgatgtataggcatccagatccttggggactgtaaaacacctcgtctgtgtagaggtcggatgttaattcttcggttgttcgaagaaaataattgctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0797400, RefSeq:Os03g0797400