Os03g0798200

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Revision as of 13:04, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0798200| Description = Zinc finger, RING-type domain containing protein| Version = NM_001058103.1 GI:115455934 GeneID:4334434| Length = 505...")
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Gene Name

Os03g0798200

Description

Zinc finger, RING-type domain containing protein

Version

NM_001058103.1 GI:115455934 GeneID:4334434

Length

5054 bp

Definition

Oryza sativa Japonica Group Os03g0798200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34117893..34122946

Sequence Coding Region

34118068..34118227,34119457..34119556,34120249..34120462,34121167..34121507,34121597..34121647
,34121732..34121804,34122338..34122556

Expression

GEO Profiles:Os03g0798200

Genome Context

<gbrowseImage1> name=NC_008396:34117893..34122946 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:34117893..34122946 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagggcgccacgccgggcgatgccgctggagaggaggtgggaggcggcggggacgtggtgatggtgaggcgggcgagcgtggcggcgtgcctgacctgcccgctctgcggccgcctcctccgcgacgccaccaccatctccgagtgcctccacaccttctgcagaaagtgtatacatgaggagttcgtcgataaggagtcctgctgctgccctacttgcaacattgatctggggtgtgctccgttggagaaactcagagttgatcacagtatgcaattcgtaaggtcaaggatatttcctttcaaacgaaggaaggttgagaacccagaaatcatttgtccagttgcgtcacctgtcaagaggaaagaaagatcactatcttcacttacaatccctgctcctcaggtgtctatacagaaatgtttgacaaagaggagaacgaaagcttcgtgcttacgcaactttcctttgcattctacctcgaggggcagtaaagatacatcaaagaaacttgggggttggagaccattgggttgtcaacttaagcttggcaaagacaaaaaatctctcaaatcaagtgtaaaagatacaaacagaaccaaaagtaagtctggtgatacagatgatggtgctcctgctagtaaagcaaaggctagagaaccctttacaagatatgggcgtgcagctaagaggactggaagaaagaaattgctcatgttgaagaacaaaaagaaaaggttcaaggcaaagcagcccagtaaaaagaggagattccgagcactatggttttatctacttgctgcttttgaccagagaggagtaccaactttaccacaactaccagcaaagtatttgaggatcaaggatgttgatttgcctgcttctattatacagaagtaccttgcacagaaacttaacctctcaagtgaaactgaggtagaagtgttgtgtggtggcaaagtagtgaaccaagggatgacactgcatgatctagcagattgctggcttgagaaaggaccaaagagccgaatgcgctcatcggtaggctccccggccactggattcatggtgacattgttctatagaaggccagatgtggatgtgtcctcatccccagctccaccccaacctgacactgaaagttgccatagctga</cdnaseq>

Protein Sequence

<aaseq>MQGATPGDAAGEEVGGGGDVVMVRRASVAACLTCPLCGRLLRDA TTISECLHTFCRKCIHEEFVDKESCCCPTCNIDLGCAPLEKLRVDHSMQFVRSRIFPF KRRKVENPEIICPVASPVKRKERSLSSLTIPAPQVSIQKCLTKRRTKASCLRNFPLHS TSRGSKDTSKKLGGWRPLGCQLKLGKDKKSLKSSVKDTNRTKSKSGDTDDGAPASKAK AREPFTRYGRAAKRTGRKKLLMLKNKKKRFKAKQPSKKRRFRALWFYLLAAFDQRGVP TLPQLPAKYLRIKDVDLPASIIQKYLAQKLNLSSETEVEVLCGGKVVNQGMTLHDLAD CWLEKGPKSRMRSSVGSPATGFMVTLFYRRPDVDVSSSPAPPQPDTESCHS</aaseq>

Gene Sequence

<dnaseqindica>176..335#1565..1664#2357..2570#3275..3615#3705..3755#3840..3912#4446..4664#acacgtcgcctcgcctcgtctgcgtctgcgtctgcgtctgcgtctccgtctccaacccaggcggcgtaggggaaggagaaggaaggagagatcgcgcggcgcgctggctgtcgctgtcgccgtcgcgcaggctcgtccacctcgcgaaatcgtgagctcgcgcgccgctccgggcatgcagggcgccacgccgggcgatgccgctggagaggaggtgggaggcggcggggacgtggtgatggtgaggcgggcgagcgtggcggcgtgcctgacctgcccgctctgcggccgcctcctccgcgacgccaccaccatctccgagtgcctccacacctgtgagtccccctcctccaccctgctccgctcacagtccccacgctttctcgccccgcgcgctggggaggtcgtccccacgcgtcaaatctgcacatttgcgcggtgattcggggtgggtttttgaggtgacgcatggaaggtggcagtttccgccgttccatgagctatttctgcgtgggcttatttttttttccccgttggtgcgtcaaaggtgggatgattttcatcgttcgttcgcgaaataggaatttggttgtgccatttccgtggggttttgaggtggtgcgtgaatatctctcgatgtcggcatgtcgaggagggcctagcttgtgattcctgggttcgttgctcatcagctcatgtgttctacggggatttgggatgaggctatcaggccagtggaagtgatcggttgcggtggacttttgtgcggtgacgaattacgtttgcccagaaaggggcgcacgctacttatttaataatatttaatttcatgatgatctatttcttcgatgcgaggattagaaaacttgtcaggcaaatatacaaaaaaagattaatgaaatttatgaagagagtaggaaggtcctccctattttcatcaggaagaaaaggggcaagaggatgtgtaaaaggtggcacttttggttagtgtagtgtatgccattttttttttattgtcaggtgcttaaatgcatgaagcaaaggttgcatacacatcgttttttattgtcaggggacttcattctttgaaacatgttgagtggccttgttataaacaataactagttactgttcattcttggaaacatgcttagttctttttctttctagtttgttgaaatatcgtaactgtgccattgtatggatgcttggcatgtaatactgatcgaatgatgggtgagctcattaggaagttaggcaaccaaatatatagataatctagtattctgtattcggttggtccttcttatttctaagttattctggaataagagaggagaaaaatcctaatgtgggcacactgattcattccatattttttatgactcttgcaacgtattcataaagcaatagtattggagtaacaactctacccagtgtccaaccaaaattttgtaaatttggggagtcttactgccaacagctgccaatagaaacacttgatctgttaccagttaattcttgtaatatcgtgcttcaaccattgatttatacctttaaccagtctgcagaaagtgtatacatgaggagttcgtcgataaggagtcctgctgctgccctacttgcaacattgatctggggtgtgctccgttggagaaactcaggtttgtctttgtcactgtttccctgaaatattttatctacactattgcatacttctgaggcttaaaaccattgttcagttattgtattattttcttttctatgtcatgcccccaatttgatattgcgatttcaatgcagcgcatgtacatacacctaagaagttagtgacatttgggagttgggagagttttttctttaccacctctgctctcttgcatgtacaaatgagatagtcttctgtgagcaatcatccttcctccatcaatataacaactattgtgtcctgcttttttgatattattatgcatacaacactatgttcttcctcaattgccagtgataatcgtgattttgcaataccagcctagtgctgtgccactgttctgtttgcatcacatggactgttataacatcataataatctccatctgttcaatcttggcttggatggtcttaaagactttataattgttttgtttttgctcggtttattttaatgattagttgtttgttcgttacaagttataacttcgaaaggggtgagatgagcccaaacttagttcacacgatcacaccttgattaatctttagccgcttgataccgagttatcagcagcatataacaaacaagttttactttccctttttgtgatattgtagcttatggtattttcaattgtgttttgttcagagttgatcacagtatgcaattcgtaaggtcaaggatatttcctttcaaacgaaggaaggttgagaacccagaaatcatttgtccagttgcgtcacctgtcaagaggaaagaaagatcactatcttcacttacaatccctgctcctcaggtgtctatacagaaatgtttgacaaagaggagaacgaaagcttcgtgcttacgcaactttcctttggtatgtagttctcttgtaatagttcccctgagaatcggatgtgtgaagaattctaatttcttatctgtaaatccactattagaattgttcaaatgaatgtgactctgcatcaccagaatgctgtaagcaaccctataggttaggtcataccatgtatttccattgttttagtgccatagagccatctacatggtatgccagctattgtcgtattattgcagctggcacaatcacagatgtgtgctaggtaacagttcttggcactgtccgcatgtgttattggtatgctaaaggttgtgatagtcaacatgtgaatatttacgggctaatacataacaaatggttatctgaatcttctgaatttatttatagtccaggcgacattaatgatagatgcacaatacttttattttgccttcaaaactcaaatagtttcctacaaattgaggcaatccatagaaatttcatactccaaatacctttgttccaaagacatataggaaagtttcgttaggattgaaattcttcaaaaatcctccaaataccttttgttgcaaaggagatgttatgcatgaattaaatgcaaccgatgcccctcccctccaaattctaaatcgatgcgatttttattgctgttgtgtagagtatttttttctggtctgattttaatgaataaattttcttttccccgccttgtgatgtagcattctacctcgaggggcagtaaagatacatcaaagaaacttgggggttggagaccattgggttgtcaacttaagcttggcaaagacaaaaaatctctcaaatcaagtgtaaaagatacaaacagaaccaaaagtaagtctggtgatacagatgatggtgctcctgctagtaaagcaaaggctagagaaccctttacaagatatgggcgtgcagctaagaggactggaagaaagaaattgctcatgttgaagaacaaaaagaaaaggttcaaggcaaagcagcccagtaaaaagaggagattccgagcactatggttttatctacttgctgcttttgaccagtgagaaacactagacttgtcttgtgagatttgtgccgtttcttcaaaggaaaagcagaaatcatgctttgtgtttgtaattatttcaggagaggagtaccaactttaccacaactaccagcaaagtatttgaggatcaagtgagttatttggttgcacttttctagtcaaaacagtatttgttaagccacactaacaactgccttttgttatatttgtcaaagggatgttgatttgcctgcttctattatacagaagtaccttgcacagaaacttaacctctcaagtgaaactgaggtatgtctttacatatttctttcttgtagtgatcatcaaaaccagtctgttttttgtgccagtatccagattagttagaatcagcagtgagaaagaattccatcaatatttggctttcctgccagggacaagactggctaactggagctaaaatctcacaatctaaacatagttagatgtagttatggcacattcttagctgttctttggaggaaaacaacttacttcatgattatatttgaaaaggcaagaaaattcaccatactgtttccaattggtgcttgattgaaggctgaagctgaccggtgttcagttgattttgtgctgtagatacttttgccactttgttttgcgcataaccacgtttgtctttgcaatgaacaacataactgttcgctgcttcaagtttcatggtgctgcttgacacttgcaacatgtgaaattattaccctatattgacaaaagttgacagaacattctgctcattgcacagcctattttcttctgctctcaccaacgagtcgtggttgcaggtagaagtgttgtgtggtggcaaagtagtgaaccaagggatgacactgcatgatctagcagattgctggcttgagaaaggaccaaagagccgaatgcgctcatcggtaggctccccggccactggattcatggtgacattgttctatagaaggccagatgtggatgtgtcctcatccccagctccaccccaacctgacactgaaagttgccatagctgatgcagagctttgcttcgtttctgaaccatctgtgattggcttcactcattgggctgtcagcccttgattgatctgcgaatcggttccaatttgtgtgaggctcaagccacaccaattcactaatatgtagataaatgctactaattttacaagccatgttgggcttctgatcatctaccttcttcaaccattattttccttttttttctcttcaaccattgtacctaggtatgtgatctgtaatgagatgttaatcgttaagtatcagttgttagagctagggacttcatgttgtctccacgtagctagtagtactagattatgcttgtgtatttgaatttgctggtgcattcatcatgcatgtatatatataagctctggaattccttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0798200, RefSeq:Os03g0798200