Os03g0805200

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Revision as of 13:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0805200| Description = Similar to RNA helicase (Fragment)| Version = NM_001058161.1 GI:115456050 GeneID:4334493| Length = 5269 bp| Definit...")
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Gene Name

Os03g0805200

Description

Similar to RNA helicase (Fragment)

Version

NM_001058161.1 GI:115456050 GeneID:4334493

Length

5269 bp

Definition

Oryza sativa Japonica Group Os03g0805200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34463206..34468474

Sequence Coding Region

34463531..34464034,34464579..34464692,34464871..34465038,34465414..34465656,34466257..34466340
,34466432..34467232

Expression

GEO Profiles:Os03g0805200

Genome Context

<gbrowseImage1> name=NC_008396:34463206..34468474 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:34463206..34468474 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactcacgccccactcgcagcgcatacgtgcctcctcacctccgtggccaggcaccaaccacaactgcagctccagctccagctccaggaccagctgctgtccagccctcagcttctgtacagccttctggttacgcagctattgttggtggctctcgctgggctggccctgccagtggtgatggtactggcgctgtaggtggcccacgccagagcgttggtggtcgtggtgggggtgggggtgggggtgggggttggaactcccgccctgggtgggaccggagagaccgtgaacctaacccttttgccaatagcgaggcagaggaagccacagaggttgattttgatacggcaaacactggcatcaactttgatgcctatgaggacattcctgtggaaacaagtggccatgatgtgccaccgccagtcaatactttcgcagagattgatttgggtgatgcgctgaatgagaacatacggaggtgcaaatatgtgaaacctacgccagtgcagcggtatgccattccaatctccattgcagggcgggatctcatggcttgtgctcagacagggtctggaaagacagccgccttttgtttccctatcattagtgggattatgagctctaggccaccacagaggccaaggggatcgaggactgcataccctcttgcattgattttatcccccactcgcgaattatcagtccaaattcatgaagaagcaaggaaattcgcataccagactggtgttagggtggttgttgcgtatggtggagcaccaatacatcaacagttgagggaattggaaaggggcgttgaaatccttgtggcaactcctggtcggttgatggatctgctggagagggctagagtatcactgcaaatggtgaagtacttagctcttgatgaagctgatcgaatgcttgacatggggttcgagccgcaaattcgtaaaattgttgagcagatggacatgccccctcgcggtgtgaggcagacaatgttgtttagtgctacttttccaaaagaaatacagcgcatggcttcagatttccttgcggactacatcttccttgctgtaggaagagttggttcaagtactgacttgattgctcaaagggtagagtttgtccttgaagcggataaaagaagttacctcatggatctcctccatgcccaaaaagcgaatggtactcatgggaagcaagcgcttactctggtctttgtggagacaaagaggggagctgatgctttggagaactggctttacacaaacgggttccctgcaacaagtattcatggcgaccgaacacaacaggaaagagagtacgcgcttagatcattcaagagtggagcaacacccatccttgttgcgactgatgtagctgcccgtggacttgacatacctcatgttgcccatgtcatcaattttgacctcccaaatgacatagatgactatgttcatcgtatcggacgaacaggacgagcagggaagtctggcttggcaactgcatttttcaacgagggcaatctatccctggcgaggccgttatgtgagctaatgcaggaagcaaaccaggaggttcctcaatggcttgaacgatactcggcccgttcttcgttcggaggtggtggtggcagaaaccgccgatcaggcggtgcccgttttggtggccgtgacttccgccgcgacaataggggtggaggcggcggcggttatggtggtggcggtggtggctatggaggcggcggttatggagggggcggtggatatggcggtggctatggtggtggtcaaggctcaactagttcgtgggactga</cdnaseq>

Protein Sequence

<aaseq>MRSSWADSVANAEESAPATGAAPTPVANHQNSRPTRSAYVPPHL RGQAPTTTAAPAPAPGPAAVQPSASVQPSGYAAIVGGSRWAGPASGDGTGAVGGPRQS VGGRGGGGGGGGGWNSRPGWDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDI PVETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACA QTGSGKTAAFCFPIISGIMSSRPPQRPRGSRTAYPLALILSPTRELSVQIHEEARKFA YQTGVRVVVAYGGAPIHQQLRELERGVEILVATPGRLMDLLERARVSLQMVKYLALDE ADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPKEIQRMASDFLADYIFLAVG RVGSSTDLIAQRVEFVLEADKRSYLMDLLHAQKANGTHGKQALTLVFVETKRGADALE NWLYTNGFPATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINF DLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVPQWLERY SARSSFGGGGGRNRRSGGARFGGRDFRRDNRGGGGGGYGGGGGGYGGGGYGGGGGYGG GYGGGQGSTSSWD</aaseq>

Gene Sequence

<dnaseqindica>4441..4944#3783..3896#3437..3604#2819..3061#2135..2218#1243..2043#actttcggcatccgctgctgttttctcttccgctttttcctctctctctcgcctcgcctctgcttcctcctcccgttcgtctcccctacctacctagggtttctcgccgcctcgcatcccctcctcctcctcggctggttcgcctcctactctacgcttgctgctgcaggtgagcatccccccgatcccgtctattcgtcttcgcgcgcgcgcttccgctgccgatttgctcgatccagttcgttttgacgggcgattgctcttgtttttgggaggaattccggttgtttttttgtttcgagggcgtttgcttggagttggcggtgtcggcggtgctgcttgcttgttgaatctattggtgaggtgttttgagatttggagctgcttccgctaggttgcatgcgggctatgtagatttggtcgattcgtagggtttccgcggggggattggccgcggattggaaaggaattcacggtttagggtagggttctcccgcttaatcgtgtgggagacggtacctcgtttcgtggcttcgattcacgagtttatatggggtttccccgcttgcatgctgctcttatcgtcgtatctgagatgattgcgttagtttggtgtgattgctgcccgttggtactgtttttgtgttgaatacgttttctaaccgatgagatctactggttaatgttaatgcaagtgtagtcaatttactttgtgctgtaagtagattatgattccctgtccacattactagttggagattggttttggtgctgtttactgagtaatttgcttagcatagttgtagctaccagagctcttagcaaaaatctgccaatgctacgaaatatgataattcccactcggctctttgcctctgttagctttagtgcttctttattgtggattttaagcttcattttaatttctggatgatgtttatagagacataatttggattgtttcatatatgttttcatacaatctccagtaatttgactgcagttacatgttgtgttagccttatttgtttgccacttaccaaaggcttaccaaaggattgacaagaaaaaaaattgatagttgttcatttagttgatattctgtattgttgccgctgaagcacctttcttttttgttcccagatgtcacattatgtttgtattgacttgctttatgtatctgttatctccaggtacaagcgataagcagtagcttcttcatcaaaggttttgtgcaaaattatgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggcgcccgcgactggtgctgctcccacccctgttgctaatcaccagaactcacgccccactcgcagcgcatacgtgcctcctcacctccgtggccaggcaccaaccacaactgcagctccagctccagctccaggaccagctgctgtccagccctcagcttctgtacagccttctggttacgcagctattgttggtggctctcgctgggctggccctgccagtggtgatggtactggcgctgtaggtggcccacgccagagcgttggtggtcgtggtgggggtgggggtgggggtgggggttggaactcccgccctgggtgggaccggagagaccgtgaacctaacccttttgccaatagcgaggcagaggaagccacagaggttgattttgatacggcaaacactggcatcaactttgatgcctatgaggacattcctgtggaaacaagtggccatgatgtgccaccgccagtcaatactttcgcagagattgatttgggtgatgcgctgaatgagaacatacggaggtgcaaatatgtgaaacctacgccagtgcagcggtatgccattccaatctccattgcagggcgggatctcatggcttgtgctcagacagggtctggaaagacagccgccttttgtttccctatcattagtgggattatgagctctaggccaccacagaggccaaggggatcgaggactgcataccctcttgcattgattttatcccccactcgcgaattatcagtccaagtacgttttccactccttttttggtttggggtggggcatggggctgtccttattgttgcattgtttcttactatatacttttctgtttcagattcatgaagaagcaaggaaattcgcataccagactggtgttagggtggttgttgcgtatggtggagcaccaatacatcaacaggtttttctcgcagccttatttatttccgcataatgatggatcaatcaaccttggagctttgctgtttggtctgctgatttcctttgtaccttaaaagagatcattatattgtgttgtgcatatgagccccccttccattcatgtgcactctagccccaaattgtaaccttgctcaataatgtataacgaaagctcgcaggtctctaggcattctagaaaggttatgatagccatcctattttgtttgtgggtgctataaatctaacaagtgatctttgctgctggctgcatacatgctgtaatgtggaagagacattattaattatatgaatgtctttccaaatcattggacttgtgaccataccgtgctaaaaattgactggagctctcataacatagatatgcgagctatcttaactatgtatatggtgatagatgattgaagtatgtaggcccagaaaaatagtcatgcatctgtttaggcaatcatatcatgaccaaatattattagctttggtaagctagcctagaaagtaaacagccatcctttgcatagtgacgtgcatagctattgaacacacgctttatctgttattgcagttgagggaattggaaaggggcgttgaaatccttgtggcaactcctggtcggttgatggatctgctggagagggctagagtatcactgcaaatggtgaagtacttagctcttgatgaagctgatcgaatgcttgacatggggttcgagccgcaaattcgtaaaattgttgagcagatggacatgccccctcgcggtgtgaggcagacaatgttgtttagtgctacttttccaaaagaaatacaggtatgttttctactttaaacttcctgctttgataatatccatcagcatatgatgtatttaacgattttattggcagtcctgcaatttagtcaatttatacctgtccaatagttggttgtgtgtttttatcaaacgtgtattccaaagtaaaaaaatcagatctattactatagtggtctatctacctacatttaagaaagatcacatgcaacatgtttcaggggtattgttttccaaatattgtgtggtagaatttgatcggaaaaattgtaggcacaaatgcctacagtaaaatactgcgataatctatatgcagtcatctggttagataatcttatatttttcttgatgcaaatctcctttgcccccttgcagcgcatggcttcagatttccttgcggactacatcttccttgctgtaggaagagttggttcaagtactgacttgattgctcaaagggtagagtttgtccttgaagcggataaaagaagttacctcatggatctcctccatgcccaaaaagcgaatggtactcatgggaaggtattgatgcatcaatagttcttgatgtaatttactttatgatatcatgaacatttattcactagactaatgaaagctactcttaaggaagataggttcagctcaaactgtgatcaattatgaatctttatgaataggagtattgttccaccagctcatgttttcatcttgtttgcagcaagcgcttactctggtctttgtggagacaaagaggggagctgatgctttggagaactggctttacacaaacgggttccctgcaacaagtattcatggcgaccgaacacaacaggtacgccaatctgtggatgaccttgcactatatgacatgggcatttcaattattttctgatttatctgtgcatatcataattggattttagggaaataaaaagaacttcaatgctccaacaaggcaaaaacaaatgcatgttactaccatacttgatatgtataattttacaaatggaagtgatagctcatcactcgtctaaaacaatgcagtgataaagctatcttatatagagaaaattggaaccatgccattataatttgtagaaaaaagttataacatattcaacctaaaataaatttattatgaaaacatattcaattattgatttaattgcttccagtttaatcaagtttgtagaaaaaagttataacatattcaacataaatggttggcattctttatgttttgtttcaataattcagactgagcagcatgatgcttgtttctgatgtcacataggcacatgtatggcaccttgttgatgccttaggtctgctgaaatgtaacatctttgttatctctgtatgcttggtattcccaggaaagagagtacgcgcttagatcattcaagagtggagcaacacccatccttgttgcgactgatgtagctgcccgtggacttgacatacctcatgttgcccatgtcatcaattttgacctcccaaatgacatagatgactatgttcatcgtatcggacgaacaggacgagcagggaagtctggcttggcaactgcatttttcaacgagggcaatctatccctggcgaggccgttatgtgagctaatgcaggaagcaaaccaggaggttcctcaatggcttgaacgatactcggcccgttcttcgttcggaggtggtggtggcagaaaccgccgatcaggcggtgcccgttttggtggccgtgacttccgccgcgacaataggggtggaggcggcggcggttatggtggtggcggtggtggctatggaggcggcggttatggagggggcggtggatatggcggtggctatggtggtggtcaaggctcaactagttcgtgggactgatactgattcccggctgtcgcgagcaacgatcatattctattgatttccctgaaaacatctgatgtgttgggatttgtaatcagcctggttggcatggtgctggaaaatgcgcccgtttaccttcaatttatggatggttgttactgcactggctttctcgtttactggcaatagtcttggttggctgattcacctgtccttttcagttgattgtttcgcgtagtttactagtttcggacgaggcattactggccagatgttttttttcttttgtttattaatgttctttcatttttgaccggaatacttctatactagttttggc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0805200, RefSeq:Os03g0805200