Os03g0805500

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Revision as of 13:05, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0805500| Description = AMP-dependent synthetase and ligase domain containing protein| Version = NM_001058164.1 GI:115456056 GeneID:4334496| ...")
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Gene Name

Os03g0805500

Description

AMP-dependent synthetase and ligase domain containing protein

Version

NM_001058164.1 GI:115456056 GeneID:4334496

Length

4942 bp

Definition

Oryza sativa Japonica Group Os03g0805500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34482626..34487567

Sequence Coding Region

34483027..34483140,34483241..34483450,34483541..34483639,34483789..34483914,34483989..34484205
,34484287..34484381,34484949..34485169,34485258..34485331,34485471..34485593
,34485923..34485963,34486042..34486243,34486354..34486613

Expression

GEO Profiles:Os03g0805500

Genome Context

<gbrowseImage1> name=NC_008396:34482626..34487567 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:34482626..34487567 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gtctactggtcaatggtgctgaaggagatctcaatcaagttccaacaagaaccaaagtcaattctagatacatcagataaatcaaggaaagggggaacatggctccaaggtgctgtgcttaatattgctgaatgttgtctgttaccttggccttcccaaaacaggacagatgacagcacagctattgtttggagggatgagggtcttgacaatcacccagtgaaccgtatgtcactgaaggagcttcacaatcaagtgattacagttgctactgcgcttgataccatgttccaaaagggggatcgaattgcaatagacatgcctatgacatgcaatgcagtcatcatatatttggctattgtccttggtggttttgttgttgtgtcgatagcagacagttttgcacctcaggagattggtacacgcatgagtgtgtcaaaggcgaaagctatttttactcaggatttcataattagaggagggaagaaggttccactatacagccgtgttgtgcaagggacttcatctaaagctgttgtaattcctgcaactggaggctttcttggggtttcactaaggaatggtgatatgtcctggaaagatttcctttcttgtgctgctggaaggtcgtccatttatcccacagtttatcaaccttcagacgctctaactaatatactattttcttcagggacaactggagaaccaaaagctatcccatggtcacaactttctccaataagatgcacatgtgatacatgggcgcatttggatatccagccacaggacatattttgttggcctactaatcttggatgggttatggggcctatactcttgtactcatgctttttaagtggtgcaacgttggctttgtatcatgggtcaccacttggtcgtggtttttgcaagtttgtacaggatgctggtgtcactatattaggaagtgtacctagcttagtgaagtcatggaaagctgggaattttactgaagggcttcactggaccaaaatcagggtactctccacgacaggagaggcttctgatattgatgatgatctatggctatcttcgcgtgcctcttacaagcccattattgaatgttgtgggggtactgagctggcatcgtcatacattcaaggcagtcttctgcgttcgcaagcttttggagcttttagtggtgcatccatgtccactgggtttgtcatacttgatgaacaaggaactccatatcctgatgatgtaccttgtgctggagaagtgggcctcttccctttatattttggcgctacagatcgacttctcaatgctgacaacaataaggtttattttgatggaatgcccatttacaatggaaggcaacttcgacggcatggagatataatccaaaggacagtaggtggttactatattgtgcagggaagagcagatgacactatgaatcttggaggaattaagacaagttccgtggaaatagagcggatatgtaatagagccgatgaggctctactagaaacagcagcggttagcatcaaacctgctggtgggggaccagaacagctggctatcttggctgtgctaaaagatagatcaccaccatgtgatgcaaatgttctcaagagcaaatttcagagagccatccaaaagaacttaaatcctcttttcaaggtgagctatgtcaaaatagttcctgagttcccaagaacagcttcaaacaagctgctaagaagagtactgagggatcagctgagcaaagaactctcgaatcgcagcaagctatga</cdnaseq>

Protein Sequence

<aaseq>VYWSMVLKEISIKFQQEPKSILDTSDKSRKGGTWLQGAVLNIAE CCLLPWPSQNRTDDSTAIVWRDEGLDNHPVNRMSLKELHNQVITVATALDTMFQKGDR IAIDMPMTCNAVIIYLAIVLGGFVVVSIADSFAPQEIGTRMSVSKAKAIFTQDFIIRG GKKVPLYSRVVQGTSSKAVVIPATGGFLGVSLRNGDMSWKDFLSCAAGRSSIYPTVYQ PSDALTNILFSSGTTGEPKAIPWSQLSPIRCTCDTWAHLDIQPQDIFCWPTNLGWVMG PILLYSCFLSGATLALYHGSPLGRGFCKFVQDAGVTILGSVPSLVKSWKAGNFTEGLH WTKIRVLSTTGEASDIDDDLWLSSRASYKPIIECCGGTELASSYIQGSLLRSQAFGAF SGASMSTGFVILDEQGTPYPDDVPCAGEVGLFPLYFGATDRLLNADNNKVYFDGMPIY NGRQLRRHGDIIQRTVGGYYIVQGRADDTMNLGGIKTSSVEIERICNRADEALLETAA VSIKPAGGGPEQLAILAVLKDRSPPCDANVLKSKFQRAIQKNLNPLFKVSYVKIVPEF PRTASNKLLRRVLRDQLSKELSNRSKL</aaseq>

Gene Sequence

<dnaseqindica>4428..4541#4118..4327#3929..4027#3654..3779#3363..3579#3187..3281#2399..2619#2237..2310#1975..2097#1605..1645#1325..1526#955..1214#agcacacgcacacgcacaccacacagtctacctatacctactactacctgtcatcttctccttcttaatcccaactaaatgcgcacataaacgaagaagatttgcactgatacccgcgctgatacaagcaagcatccggcgatggcggcggcggcggcggcaagggggagcgtgtgggagatccagcagcgggacgtggaggccgcggggctggccgacgccgacgcgggcgccttcgtcgcggcgcttcgctccgccgccgccgttgcgacgggtgggcctgacgccgcgtgggaggccgtggcggcgggggtgctgcggccggagcacccgcacgcgctccaccagctcgtctactactccgtctacgccggctgggatcgcgccgcccggggcccgccgccgtactggttcccgtcacagtaagtcacctcgccggagacgaccagactggcaaactgacagtggctggtttcagtgtatgcaaagttcaagcttatgttgatagcgtcctagtactacttaatttctagtgtgatatcatcagtgataagatttccttgtgttaatttccacttgtcatgtcaagtaacctatttgaagtacaatgatcagtgcatgatttctctacgtagtgatttagtgtttgaaatgtgacaggattgacactaaacaaacaaatcttggtagactgatggaagcacatggtcctaggttgttaggatcatcatataaggacccagtttcaagttttcacctcttccacaagttctccgtagagcatcaagaggtcagtcggttgctctaaactagtcagctccagctaagcaaccaaacaagtttgaagtcatttctttacaaccattggagtggctatatgaatgttatttcttgaatggacagtttaagtttccacaggcattttgatcctactcccagtctatcctttgttaggtctactggtcaatggtgctgaaggagatctcaatcaagttccaacaagaaccaaagtcaattctagatacatcagataaatcaaggaaagggggaacatggctccaaggtgctgtgcttaatattgctgaatgttgtctgttaccttggccttcccaaaacaggacagatgacagcacagctattgtttggagggatgagggtcttgacaatcacccagtgaaccgtatgtcactgaaggagcttcacaatcaagtgatgtatgtatatgttatcagactaacagtaagaatcatgctaaagcgtattaagctttgccataacttattctgaatcatcaccattgttttgctgcttttggtgttttcagtacagttgctactgcgcttgataccatgttccaaaagggggatcgaattgcaatagacatgcctatgacatgcaatgcagtcatcatatatttggctattgtccttggtggttttgttgttgtgtcgatagcagacagttttgcacctcaggagattggtacacgcatgagtgtgtcaaaggcgaaagctatttttactcaggtaggaaattagtgaatctttcatgacatagtcattaacactaaagtagggcttcatctaaatttcacgagatttcaggatttcataattagaggagggaagaaggttccactatacaggtacgaacggatgattgatcagttcatttcagtttgtctattctgatagtataatgcacttagcattttgtttttttaaaaaaatgcattttcttcatatatttttctaatttatgacatttgcttagtttgaagttaagtaggagtgtaggacgttatcatgtgaacactgaaaacattctctttcattgattttagaattcagcttagatttttcctgtgaatctaaaaaataggagtacttaagtaccagatagttcatagtacatttcaatcagaaagacaatttgcagaacagataaatatttcataataattccattcttcagccgtgttgtgcaagggacttcatctaaagctgttgtaattcctgcaactggaggctttcttggggtttcactaaggaatggtgatatgtcctggaaagatttcctttcttgtgctgctggaaggtatattatacagaaataaatcttagatggctttggataagtgtattgtctttccattgaagaaaaaaggaacatgcaattgttttttttttctttactaatttcatgatatgagtgacaatatatgttggatttgcaggtcgtccatttatcccacagtttatcaaccttcagacgctctaactaatatactattttcttcagggacaactggtatattaacactatttcattgcttcccctgattttagtatttcttttgtccacccctgatttttgtctgttttatttacttgtgcaggagaaccaaaagctatcccatggtcacaactttctccaataagatgcacatgtgatacatgggcgcatttggatatccagccacaggacatattttgttggcctactaatcttggatgggttatggggcctatactcttgtactcatgctttttaagtggtgcaacgttggctttgtatcatgggtcaccacttggtcgtggtttttgcaagtttgtacaggtacatctgatgtactttgcaccgtcacttgctttggaatgttaaagaagatttatattttatcattgcttcttgtgtgcactgtaaactgtactaattatgtaggatttgagaccctgcttggttgagcttcaggttataatctaaagctgattttgaattttagaatttgattttaggattaatcttaggggtttcctttgttacttttgtcatctagctctcttctcacaattactataacaagacaagtaaaaatcctaactaaattattcttaaaaattaaacctcaaagttccaaattgcttttgatttttcttaaaaattaaaaatctgattattctttgtttattcattctgatttcatatttggttatggcacatctctactgggtagtgagtactaacaacgtgtttcacctcaaaaactgtttttgctctcagatcctgtttctttgagccccctttccccccacaaatcaggaagagttttgccaaatgcttatgtttgaagataaatatgaactgaacttacttaatcatcatgctctgtgaaatattttgcaggatgctggtgtcactatattaggaagtgtacctagcttagtgaagtcatggaaagctgggaattttactgaagggcttcactggaccaaaatcaggtgagtcatccttccactatcagaaggctcacagcttcatcacaatcagaaaggaagttaaaagtagtattataattgcagggtactctccacgacaggagaggcttctgatattgatgatgatctatggctatcttcgcgtgcctcttacaagcccattattgaatgttgtgggggtactgagctggcatcgtcatacattcaaggcagtcttctgcgttcgcaagcttttggagcttttagtggtgcatccatgtccactgggtttgtcatacttgatgaacaaggaactccatatgtaagcatctcccctgaaagttatgtattctggcattatgtttgaagcataaccatttcagttgactatgatagcctgatgatgtaccttgtgctggagaagtgggcctcttccctttatattttggcgctacagatcgacttctcaatgctgacaacaataaggtttattttgatggaatgcccatttacaatggaagggtatggagttatgtacttccttgtctccttttctccaataagattgctatataaacagtccattattctttgatgaaccaaatggatccatttgcatactaagttctagccagaatgacatgaactcatatgttgtattggtactgcagcaacttcgacggcatggagatataatccaaaggacagtaggtggttactatattgtgcagggaagagcagatgacactatgaatcttggaggaattaaggttgaccctcctatttcaaatgttttcaatagcttgttgtcacccttgaattttatgaaactaaataaatactgctcgtcttataaacagacaagttccgtggaaatagagcggatatgtaatagagccgatgaggctctactagaaacagcagcggttagcatcaaacctgctggtgggggaccagaacagctggctatcttggctgtgctaaaagatagatcaccaccatgtgatgcaaatgttctcaagagcaaatttcagagagccatccaaaagaacttaaatcctcttttcaaggtaagagttactacttactcgtttctgatgttaaggtcagatagtgagatgtgcacacgtgtaccgaggtcattggaatcactctttgtcatcttgacaggtgagctatgtcaaaatagttcctgagttcccaagaacagcttcaaacaagctgctaagaagagtactgagggatcagctgagcaaagaactctcgaatcgcagcaagctatgaccgacgtgacatattcaacaaggaccacaacaacaacaacaatagtagactttagtccaaagcaaggtagagatgaagagccatacgaacagtgagggtaattcaaaatcgcttcaaaaatgccctcttgcttgtcaaatggtaatattgaattatgagtgtgtcaaaaaaaaaacagccacttgaataaagagtcatgattcattgggggcgtatagagaacttcaggaaactatttttttccatgttaataaatgttgttgaattgtgagcatgttcaataggcaacggcttgaaaaagtgacatttcccgatgggaatttgtagagaacttcagaatactcatcgctgtactgtattatgttcagctcatgataaagtggtggcatggtgtttggatt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0805500, RefSeq:Os03g0805500