Os03g0811500

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Revision as of 13:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0811500| Description = PAPA-1-like conserved region domain containing protein| Version = NM_001058207.1 GI:115456142 GeneID:4334541| Length...")
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Gene Name

Os03g0811500

Description

PAPA-1-like conserved region domain containing protein

Version

NM_001058207.1 GI:115456142 GeneID:4334541

Length

3691 bp

Definition

Oryza sativa Japonica Group Os03g0811500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34838949..34842639

Sequence Coding Region

34839290..34839452,34839585..34839712,34839801..34839881,34839956..34840056,34840412..34840952
,34841437..34841994

Expression

GEO Profiles:Os03g0811500

Genome Context

<gbrowseImage1> name=NC_008396:34838949..34842639 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:34838949..34842639 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggggcatggcaaccctccactgaatgcggcggaagcagttttgaagaggcccaggagtgttgcttcaaggaagccgagatcgaaggagcagctcattagtgagttcaaggacctctcgtgcacgccgtcgcggagcatctccccggaagatgatgctggcgttgagggcagtgggcatcggcgcaaggagttgtacctcaatggccctgaggctaggggatccgtaccacacaggagtgacgcgtccagaaaaataaagagagatgataatagagctgcaggagaccatgatgaacaaaataagagcagcaaatcaaaggatggcaagcatactagtgagggggtcctggctcttgcctgcacaagaaactctggatcccctgatggccagcatttgcctccaaaagacactactagtatgccaggtttgagaaaagtaaagctcaaggttagcgggattactcgacctctacatacaaaaaacatccaagaggcaagtgatggtggcacgctcggcacatcagatggctcttctcagcggcataagcaaaaggattctggtgggcacaaacatcaccaagataagcatgatgtttcaccatcttcagaccttgttcgcaagagcaaacggattcctaagaagcgaacacttgatggtgattctggtgatgaagatggtggatcaggctatcttgtaaaatttaagatagctaaggttgtgccagaacaatctatagctactgaccatgctggagagtatgatgaatctcttgaagatgatattaagaaaaagaggctgtcaaaggtttccaaaaacaagagccttccatatgaagtggacgaagacttcactatgtaccgatctggcagggatggtaggaagaagttgaaactggtggatagcgatgattttattgaagaggaacctgagatggatgagccaaagaagagactaagtgaagctgattcacattcagatgtaaagaatgaaactactggccttataaccaggcagcgtgctcttcaaggcagaggtggcaatggtgaaactctgattgaatttcctgatggattaccaactgcttcatcgagaaggcaaaaggataaggcttctgaagtggaggcacaagccaaaaaggcagaagcggctcagaggcgtaaattgcaagttgagaaggcagagagggaacaacaggccgaagcagtgaggaaaatcctgggtattgatattgagaagaaaaaagaggagaggaaacagaaagagcgggatgagaaggaaaagcaagaaaaaacagaagaatatagaaggaactgcatccaatgtgtcatggggccagaaggaactgttgtcacatttcctgataagatgggcctccctagcatatttgactccaagcctatcagctatccacctccaagggagaaatgtgcaggcccttcatgcacaaatccatacaagtaccgggactcgaagacgaagcttccgctctgcagcctgcagtgctacaaggctgtccagggaagctctgaggctgcccagggaagctctgagacgctaacatgctga</cdnaseq>

Protein Sequence

<aaseq>MEGHGNPPLNAAEAVLKRPRSVASRKPRSKEQLISEFKDLSCTP SRSISPEDDAGVEGSGHRRKELYLNGPEARGSVPHRSDASRKIKRDDNRAAGDHDEQN KSSKSKDGKHTSEGVLALACTRNSGSPDGQHLPPKDTTSMPGLRKVKLKVSGITRPLH TKNIQEASDGGTLGTSDGSSQRHKQKDSGGHKHHQDKHDVSPSSDLVRKSKRIPKKRT LDGDSGDEDGGSGYLVKFKIAKVVPEQSIATDHAGEYDESLEDDIKKKRLSKVSKNKS LPYEVDEDFTMYRSGRDGRKKLKLVDSDDFIEEEPEMDEPKKRLSEADSHSDVKNETT GLITRQRALQGRGGNGETLIEFPDGLPTASSRRQKDKASEVEAQAKKAEAAQRRKLQV EKAEREQQAEAVRKILGIDIEKKKEERKQKERDEKEKQEKTEEYRRNCIQCVMGPEGT VVTFPDKMGLPSIFDSKPISYPPPREKCAGPSCTNPYKYRDSKTKLPLCSLQCYKAVQ GSSEAAQGSSETLTC</aaseq>

Gene Sequence

<dnaseqindica>3188..3350#2928..3055#2759..2839#2584..2684#1688..2228#646..1203#gcccaataccctactcccccgccgaaccctaaccctagctccccctcctcctttccgccactcgccgccgccgccgccgccggggcgggcggctcctgctggattgaggtgagtagcctgtaatcctgtttgccctagggttttgtggctagtcgctgtggcggtggctgggctgcctgggctgctcgcttgcttggggggttcctctccgctgttcggtttggttggtcctcatcgttaaggtttcgcagggttttgaataatctccaggggtttatgccgcgaggttttgattcattgcgctgtttcgctctaggttggtggttatgtatgattatttcggggtttggttagtttgggcgggttctccgttgaattccgtacggggtctatccgctgatgctatcgctttcatggtcggccatgtttggggggctgcatctcgttgattaaatatgtagtactacgattttagcatagacttttagtgttccggcaatgaggattctagtcaccgtatgtatctgtgtgctgattgagacttgtttccgaatcatggttgtaatggcgtgcttgattaccacgcaggtaccacgggtagctaagtcggtaggcgcctgatttgggagatcagggtgtcctgtaatggaggggcatggcaaccctccactgaatgcggcggaagcagttttgaagaggcccaggagtgttgcttcaaggaagccgagatcgaaggagcagctcattagtgagttcaaggacctctcgtgcacgccgtcgcggagcatctccccggaagatgatgctggcgttgagggcagtgggcatcggcgcaaggagttgtacctcaatggccctgaggctaggggatccgtaccacacaggagtgacgcgtccagaaaaataaagagagatgataatagagctgcaggagaccatgatgaacaaaataagagcagcaaatcaaaggatggcaagcatactagtgagggggtcctggctcttgcctgcacaagaaactctggatcccctgatggccagcatttgcctccaaaagacactactagtatgccaggtttgagaaaagtaaagctcaaggttagcgggattactcgacctctacatacaaaaaacatccaagaggcaagtgatggtggcacgctcggcacatcagatggctcttctcagcggcataagcaaaaggtttgttatctgcatttaattggggaaggaaattgtgtgaaattgtggccttctcgtgtattcaatgctttaccttattttgttgcaataatcatatcttcacaatttcatgtgaactgatctttgatttatgcatgggtcttgtggaagatgtgtccacccatcgcttaaatttctcataaatggtgcatgagatgctttcactcatcacttcttactgcaatgctatttttgaaagcttgaatcacttagtcaccgtgcattttttgccaatatgcaactaagattgatacaattataacctagatattgcactgggtgttcattattgtcatttcactgcaccatgttagtgtctctttttatggttgcccatgacttttcaacatccacaagtaattaatggtataatataattggcaatttcacagctgagcttttaattcattttgagttctaagatagtcccatcttttgtttttaggattctggtgggcacaaacatcaccaagataagcatgatgtttcaccatcttcagaccttgttcgcaagagcaaacggattcctaagaagcgaacacttgatggtgattctggtgatgaagatggtggatcaggctatcttgtaaaatttaagatagctaaggttgtgccagaacaatctatagctactgaccatgctggagagtatgatgaatctcttgaagatgatattaagaaaaagaggctgtcaaaggtttccaaaaacaagagccttccatatgaagtggacgaagacttcactatgtaccgatctggcagggatggtaggaagaagttgaaactggtggatagcgatgattttattgaagaggaacctgagatggatgagccaaagaagagactaagtgaagctgattcacattcagatgtaaagaatgaaactactggccttataaccaggcagcgtgctcttcaaggcagaggtggcaatggtgaaactctgattgaatttcctgatggattaccaactgcttcatcgagaagtataatctctagcttatatatgtactccctccgggttgataatacttgtcgttttggacaagagcacggtctccaaaaagtaactttgacaactattttctattataatatatatagaaatatcaacaaatatataattttattgaagtactttttaaggctaatctacacatatgattttcatatttttaagataaatattttagaaattatttgtagtcaaagattttaaagtttgactttacccttgttaaaaacgactaatattatcagtccggagggagtagctatttattgacattaatgtgttgccttagatctgatactaaatgccattgttaattactactacagggcaaaaggataaggcttctgaagtggaggcacaagccaaaaaggcagaagcggctcagaggcgtaaattgcaagttgagaaggcagagagggaacaacaggttagcctagtccctaagagtttcctagtttttcgccttttgcgtagccaagcttactagctcctactgtacaggccgaagcagtgaggaaaatcctgggtattgatattgagaagaaaaaagaggagaggaaacagaaagagcgggatgagaaggtactatgccataagtttttattgttgctacatttctgttcatggtacagtagactcattttacccttcctctcacctttttttccaggaaaagcaagaaaaaacagaagaatatagaaggaactgcatccaatgtgtcatggggccagaaggaactgttgtcacatttcctgataagatgggcctccctagcatatttgactccaagcctatcaggttacatatagtaccccatctgtgcatcttttaagtttttccaagtttacgtcaagcatagaatccatgtattgatccattttgaagttatgcatttacattcaactccatttgctttatccatcttcccagctatccacctccaagggagaaatgtgcaggcccttcatgcacaaatccatacaagtaccgggactcgaagacgaagcttccgctctgcagcctgcagtgctacaaggctgtccagggaagctctgaggctgcccagggaagctctgagacgctaacatgctgatctcagaaattaaaggatggtggtgaggcaatcgtgactgttttgtggaactggagaattgtgctagttccatttgccacctttgctgcttgttcttgtgttgccaatgttaccttttgccagtcctaacaatcaaccaaccaacagagggggtgtcgcctgctgctggccatccttttgactcgttgtggatgcagctgcagtgttctcgattaaggattaatttaggtggtagtcagatgaatgagagtgatgtatacattagttgtacagtgatcatcctactcgtcatcgttggtcatgaaatcatcttgaaaattgtctctctgtttgcactttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0811500, RefSeq:Os03g0811500