Os03g0820100

From RiceWiki
Revision as of 13:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0820100| Description = Similar to Auxin-resistance protein AXR1| Version = NM_001058252.1 GI:115456232 GeneID:4334591| Length = 6300 bp| D...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0820100

Description

Similar to Auxin-resistance protein AXR1

Version

NM_001058252.1 GI:115456232 GeneID:4334591

Length

6300 bp

Definition

Oryza sativa Japonica Group Os03g0820100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:35263573..35269872

Sequence Coding Region

35263724..35263785,35264414..35264586,35264682..35264845,35265154..35265264,35265455..35265534
,35265636..35265786,35265883..35265976,35266568..35266656,35267819..35267892
,35268006..35268168,35268592..35268677,35269158..35269241,35269333..35269513
,35269597..35269680

Expression

GEO Profiles:Os03g0820100

Genome Context

<gbrowseImage1> name=NC_008396:35263573..35269872 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:35263573..35269872 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgccaccgccgccgccttcgcggagcccaagaccaagtacgatcgccagctcaggatatggggtgatcaaggacaggctgcactggagaaggctagcatatgcttgcttacctgtggccctacaggaactgaagcgatgaagaaccttgtgcttggaggagtagggagtgttactgttgttgatggttccaaagttgaacaatctgacatgggaaacaatttcctgttggatgcagaatgcttggggcaatcaagagcaaaatctgtatgttcgttcctgcaagagctgaatgatgctgtaaatgccaagtttgtcgaggagtctcctctggctctcatagacacaaacccttcattcttttcccaatttaccgtagtcattgctactcagcttccagagagatctttactgaaactagatgatatctgcaggaaagcaaatattgtgttggttgctgcacgttcatatggtctaactggtctagtcaggatcagcgttaaggagcacaatgttatagaatcaaaaccggaccacttcctggatgatttacgccttcacaatccatgggttgaactcaagcaatttgcaaagtcaattgatataaatgataaagatcctgttgtgcacaagcacactccctacattgttatccttgtgaggcttgcagaaaaatgggcagatgcacatgatgggcgcttaccttcgactaggcaagagaaaaatgaattcaaggcactgattcgagaatatatgcttaatttagatgaagaaaactacaaagaagcagtggagtcctcgtataaagtctctgttactccagggatcagtgatgagatccgtcagataattgatgatagctccgctgaagtgaattcatcttcttcagatttctgggttttagtggctgctttgaaggaatttattgcaaatgagggcaacggtgagctacctcttgaggggacgatacctgatatgacttcacttactgagtactatgttagcctgcaaaagatttaccaagctaaggctgaatctgactgccttgccttggagcatcatgtaaaggatatcttgaagcgaattgatagagaccctgattctatttcacgggcatacataaaaacattttgcaaaaatgctagaaaactcagagtctgtaggtaccgcagtatggaggaagagtttagctctcctgttctttctgaagttcaaatatacttcaccgatgaagactactgctttgcaatgaacttctatgttctgctacgtgctgttgatcgacttgcagccaactataacagatgccctggaatctttgaaagtgagattgatgaggatgtgcctaggctgaagacagctgctgtttcagtaatgagtgagatgggtatgaacggggcacctttgtctgaagacctgattactgaaatgtgccggtttgggggtgcagagattcatcccgtggctgccttcattggcggagtagcatcccaagaagtaattaagctggtcaccaaacagtttgtgcctttgctgggaacatttatattcaacgggattgatcacaaatctcaagttttggcgttataa</cdnaseq>

Protein Sequence

<aaseq>MAAATAAAFAEPKTKYDRQLRIWGDQGQAALEKASICLLTCGPT GTEAMKNLVLGGVGSVTVVDGSKVEQSDMGNNFLLDAECLGQSRAKSVCSFLQELNDA VNAKFVEESPLALIDTNPSFFSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG LTGLVRISVKEHNVIESKPDHFLDDLRLHNPWVELKQFAKSIDINDKDPVVHKHTPYI VILVRLAEKWADAHDGRLPSTRQEKNEFKALIREYMLNLDEENYKEAVESSYKVSVTP GISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEFIANEGNGELPLEGTIPDMTSLTEY YVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPDSISRAYIKTFCKNARKLRVCRYR SMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVDRLAANYNRCPGIFESEIDEDV PRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHPVAAFIGGVASQEVIKLVTK QFVPLLGTFIFNGIDHKSQVLAL</aaseq>

Gene Sequence

<dnaseqindica>152..213#842..1014#1110..1273#1582..1692#1883..1962#2064..2214#2311..2404#2996..3084#4247..4320#4434..4596#5020..5105#5586..5669#5761..5941#6025..6108#ctccttgctccgcctccacttagcttgagaccgctttattcctcgctcagggaggaggaggagaaggcgaaggcgaagcaaagcaaaacctcggaagagcggcagagcccactccacacgcggagaggagaccacgccgccgccggaagccatggccgccgccaccgccgccgccttcgcggagcccaagaccaagtacgatcgccagctcaggtaacgcaaccggcgcgcatctgcgctctctcatctccgacgggtagattccgggcgcttgccgttcgatcctagggtttagggctcttcgcggtggtggaattccggcaccgctgttcgggtgcggttcgagtgggcgcggtctctgatctagggttttggagctccttctgttcgggtgacgggtggtcaagagctggagggattttctctgacagaaattgtttcgaacgctgccggtcatgcattggagcttggttggttgaaatattgtttacgttgttcacatgtagttggggataccgactgatagcactttgctgattactaagaccctagtggattatgttaggggtccataattggtgttggtggtctagtctgtggcttaattgggtgttttcttatgtgcatctgattatctgagctgtagttgtgcttcacatgggtagttcagttgcatatataaatagcacagttcagttttactttataaaatttgaccttcatttttccagcctgcgacttgtgtattcttcttattctctgcttattttgcatccgagtaggaagaagcaacccacatactaaaaactacctgttatgattctgttaatgcaaagtacaggatatggggtgatcaaggacaggctgcactggagaaggctagcatatgcttgcttacctgtggccctacaggaactgaagcgatgaagaaccttgtgcttggaggagtagggagtgttactgttgttgatggttccaaagttgaacaatctgacatgggaaacaatttcctgtgtaatttctgtgctccgcgtttattcctgttccatttcgataaatttccagtaaagcaatggaactcatgttccgagtactctgtttatgttcagtggatgcagaatgcttggggcaatcaagagcaaaatctgtatgttcgttcctgcaagagctgaatgatgctgtaaatgccaagtttgtcgaggagtctcctctggctctcatagacacaaacccttcattcttttcccaatttaccgtagtcattgctactcaggtgtgtgtttactcttatggtaagatgcaaaatcagtgattgattttcttgacttctctgcgtagccagaacatttaacaagaagatttaaaagtcaaggaaatgagaattggcaagtttttataatcgcacaggcgcattagatattcatagatatactccctctagtaagagatgcttttttagtgtggacagtcaaacttttattattttagctatttactacacatggattgttaggaacaatgtgcacgtagtttttcctctcgcggccaaattttgctgatacccagttttttctactgcagcttccagagagatctttactgaaactagatgatatctgcaggaaagcaaatattgtgttggttgctgcacgttcatatggtctaactggtctagtcaggatcagcgttaaggtacctttattgatctgtgcaagagtttctgagttgttctttatttgacttttagcggtggactgcatcttgtttcctgacctcattatttaggacttattaatgttgcttggcggttttcatttccacagtagtcatgagccaaagcattttcaccagactgaaaactgtttccctaactattgagcaggagcacaatgttatagaatcaaaaccggaccacttcctggatgatttacgccttcacaatccatgggttgaactcaagcagtaagagttatttgtacctacattgttggcatagcaagttgcatgatccttttctcattctagatgaaatcactgttgatcttaatgcttatgtttttcagatttgcaaagtcaattgatataaatgataaagatcctgttgtgcacaagcacactccctacattgttatccttgtgaggcttgcagaaaaatgggcagatgcacatgatgggcgcttaccttcgactaggcaagagaaaaatgaattcaaggtacgtgttttgggttgttgccccaatcagtaaaaagtggttgctaatgtgttttggggactgtcaggttattgactaatctaatatcttcttcaggcactgattcgagaatatatgcttaatttagatgaagaaaactacaaagaagcagtggagtcctcgtataaagtctctgttactccagggatcagtaagtttatttttaaatgttcttctatcagcataattttacttgcagacataattttgtgtgcttgactatttcctttcttaaataccactagtaaaaactacttgaattaacttgaagttgtcactctagtttacataatgaatgaatgtggcctatgtgttaacaaacacctcctgggtcttgtacttacatgtaggctgtgttcggacatcagggttgggaacacttatcctgcgcatggaaaacagaacggtccattaacacatgattaattaagtattacgtaatttttttttcaaaaatggattaatatgattttttaagcaactttcgtatagaagctttttttaaaaaaacgcatggtttagcagtttgaaaagcgtgcgcgcggaacacgaggaagaggtgttgggaactaaggataccgaacacagccgtagtctctttttgaacccataaatattttaacttatttataaatatctgttgtattcttgttgtatgttcctgcagccatgcacgtgtacacaatataacatagcttctgtgcagaactgcaagttctaattagtggttaatttcttctaggtgatgagatccgtcagataattgatgatagctccgctgaagtgaattcatcttcttcagatttctgggttttagtggctgctttgaaggtagttataattgtgatttacaattatggaatgccaacttctattgtctgatatgccataccactgagctgttatctgaggttccaggcactcttgataaagtttgttgttgaaaccaaattggaaagtatcatacgttgttgaggtgtcagcaatattcaatgatacttttcttttttaaaaaagtgtatcatatgttgttgaggtctctcggcgctattcaatgattctttgttttaaaaaagtgaatcatatgttagttgaggtgtctctgcgatattcaatgaacctgcatgatctagacacccagttctagttttattttttgggctaaaataacaagtcagatccaaaaggttaatcttctctctagccagatgcctcatataacctgaagcaaatgtcaggtagctttggaattttgatacttatgctaaagctgcatatgagttctctccctggagaatgctcatttagaacaaaaaagctctagaagctttgtgtgtctgaagctgctttcataatgaatgtatattaaaaagcctgaaataatgtgttgtttatgaactatcttcacacttaccatctgtaaagttgcaccatatatccctttaggaatgtttccattttacatccctcagcttagcaagaagtctactaaacgcacctcaacttctcaggaaatatatcgaacactgacaagtacaaaattgattatcgagcaccaaaaatttagtaaacctggtaaattttcaacccaaagtgtttttggaggagccgcagttgctggcatgaatccaactcaaggtgttctttctgattaaaaaaaactctgttcttttgctatatcgacagtaacatcatgggtataattcaaaaggttagcttgcttagttgtctaaaccatccaaacaagaaaaagaaatacagcattgacatttccaatggtagtgagtctgactcttgagtgccaccggaagaaagcgtatatagcttctgaatatatgatattattttggagggtattaaatttctttgagagttcaggggtgtaacatggacttactcatactttatgctttctttttttggttgaaattattgttttttattagcattcatgtctcaatttggatttctttctctcgcttgctacttacaggaatttattgcaaatgagggcaacggtgagctacctcttgaggggacgatacctgatatgacttcacttactgagttagtgccctgcagtcatctagctttgcaatgatctcagattcagtcaacttctgccgaactattttcttctatcacatgaatgcagctgtttctcttttataaccttacaggtactatgttagcctgcaaaagatttaccaagctaaggctgaatctgactgccttgccttggagcatcatgtaaaggatatcttgaagcgaattgatagagaccctgattctatttcacgggcatacataaaaacattttgcaaaaatgctagaaaactcagagtaagctgctttctttaaatatacattgtaacacctgtttgggatggctacaatgatgtgcttgataatcatttgatctaactagttttaattgagaagaaccttgtagtattttgtaccctatccatattccatatatttgataaagacaaagctgattgtatgtgtatggtatactagctactagctagtactgatcattgcttttgcacttgtttcaaaagaattaaattgtacaagaggtgcaattgtcccttttaaactatgccactcctgatttattttcctccactggaatgcatgtgttcaattttctatttgacataacatgctaattcttatctctcactttaaatatcatgattgataaatattgtagaactatacctgatagttattgagtaagtgatatctgctgtctaggtctgtaggtaccgcagtatggaggaagagtttagctctcctgttctttctgaagttcaaatatacttcaccgatgaagactactggtcagtaccttttactcctttgtgcttgtcatttttttaatgttatggaactttctctgttcatatactttggcatctttactttagttttcaagctccatgcagctgttacaaaggtagtactgctgttgctgcatcctagaatatcagcctatcctaaatcatagaaattgaaaatacctgttaaactgaattgtaatgcaataccaggattacaagatgccttgattgaacctattgaagactttttctgcttcgaattgtggtttcatcgtcttgttgcaaacacaagttttctttcaaaccaatagttggtcacactgtagcatgcagtgcaactttggagtaggtggagaagtcagctattgtttcttcctttgctttgtatgttgccggaactgttgttagaatgactagccattgttatcttgttcttattgatttatttgttattcaaatgacaagcaaatttggctgcagctttgcaatgaacttctatgttctgctacgtgctgttgatcgacttgcagccaactataacagatgccctggaatctttgaaaggtaagcatgagtaaaatgttcattcactttcggtgaacattataacatcgtacatgtatttataatactaataatacactggattcggtagtgagattgatgaggatgtgcctaggctgaagacagctgctgtttcagtaatgagtgagatgggtatgaacggggcacctttgtctgaagacctgattactgaaatgtgccggtttgggggtgcagagattcatcccgtggctgccttcattggcggagtagcatcccaagaagtaattaaggtgtgttttgatctcgtgacggtaatttgtggacaaccattaattgttctttcatcgcactaactactcattcccttttccagctggtcaccaaacagtttgtgcctttgctgggaacatttatattcaacgggattgatcacaaatctcaagttttggcgttataacatcaatctggtatagagcttttcggaacctcacccaattaattacattagagttgccccagattttgtattatggccttccggtgcaatgaaaatcacttgtccatataaatgatcattgtcagatttggaattatcatcgtatttacatgggaaaaggtcaaaataccccttgaaacagtatgaattttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0820100, RefSeq:Os03g0820100