Os03g0827700

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Revision as of 13:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0827700| Description = Similar to ATP-dependent RNA helicase| Version = NM_001058308.1 GI:115456344 GeneID:4334649| Length = 6343 bp| Defi...")
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Gene Name

Os03g0827700

Description

Similar to ATP-dependent RNA helicase

Version

NM_001058308.1 GI:115456344 GeneID:4334649

Length

6343 bp

Definition

Oryza sativa Japonica Group Os03g0827700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:35616673..35623015

Sequence Coding Region

35616800..35616827,35616886..35617145,35618150..35618283,35618381..35618792,35619202..35619300
,35619606..35619830,35620199..35620576,35620959..35621102,35621379..35621474
,35621775..35622094,35622512..35622587

Expression

GEO Profiles:Os03g0827700

Genome Context

<gbrowseImage1> name=NC_008396:35616673..35623015 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:35616673..35623015 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cgcctccgccgccgccgcgggagccggagcggcggccggtgggcggccgcgggggccatcgcgtcgcccaactcggtgctcagcgagcacgcgttcaagcggctgcagctcagcgacgaggaggaggaggaggaggagggggcctacgggagtgacgaggagggggtcgaggcggtgggtggcggggagggggacgaggacgagctcgccattgccaggctcggcctgcccgagcagctcgtatccacgctcgagaagcgcgggattacccacctgttccccatccagagggctgtattgattccagctcttgacggccgtgacctgattgctagagcaaagacaggaaccgggaagacgctagccttcggcattcccatgatcaagcaattaatggaggaggatgatggacggagtgtgaggcgaggtcgtattcctcgtgttttggttctagcacctactagggagttagccaagcaagttgagaaggaaataaaagaatcagcacccaagctcagtacagtctgtgtttatggaggtgtctcatataatgtccagcagaacgcactctcccgtggtgttgatgttgttgtaggaacacctggtcgcattattgatttgataaatggcggaagtcttcagttgggagaagttaagtacttggtccttgatgaggctgaccaaatgcttgcagttgggtttgaggaggatgtggaaacgatattacaacagctaccagctgagaggcaaagcatgctcttctctgccaccatgcctggttgggtgaagaaattatctaggcgatacttgaacaatcctttgacaattgacttggtcggcgatcaagatgaaaaacttgctgaaggaatcaaactttatgctatcccgctcacatctacatcgaagcgcactgttcttagtgatctcattacggtgtatgcaaagggtgggaaaaccattgtgttcaccaagacgaaaagggatgcagacgaggtatcattagcactgacaaacagtattgcttcggaggcactgcatggtgatatttcacagcatcagcgtgagaggacactaaatggttttcgtcaagggaaatttactgttctcgtagcaaccgatgttgctgcccgtggtcttgatataccgaatgttgatttgattatccattatgaattgcccaatgatccagagacttttgttcatcgttctggacgcactggccgagctgggaaagcaggaactgcaatcttgatgttcacaaacagccagagaaggacagttagatcacttgagcgtgatgttggatgcagatttgacttcataagtcctccagcaattgaggatgtgctggagtcctctgctgaacatgtcatagctactttaagaggtgtgcacacggagtcgattcagtacttcattccagcagctgaaagactgcaagaagaattaggacctaatgctcttgcttctgcattggcacatctgagtggattttctcagccaccctcttcacgttctcttatcagtcatgagcagggatgggtgactttgcaactaactagagatccaggatatggaagggggttcttttctcctagatctgttactggctttctgtctgatgtttcttcagctgctgctgatgaagttggcaaaattttccttacagcagatgagaaggttcaaggtgcagttttcgatttacctgaggagattgcgagggatttgcttagtatggaactgcccccaggaaacaccataaccaaagtgacaaagctacctgcattacaggatgatggtcctgctactgatagttatggccgattctcaaactcggaccggggtttcaggaacagacggtccaggggtggtggctcaagaggcgggcggggtggttgggactctgatggtgaagacagatttcgccgtggtggcaggagcttcagatctgacaatgatagttggtcagatgatgactttggtggcgggagaagatcgaaccgttcgtcatcctttggtggccgcgggtcatcttacggcagtcgtagctcgtcatcctttggtggccgctcatcatcttttgggtctagggacagcagcaggagcttcagtggtgcttgcttcaactgtggcgaaagcgggcaccgagcatcagactgcccaaacaagtag</cdnaseq>

Protein Sequence

<aaseq>RLRRRRGSRSGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEE EEGAYGSDEEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIP ALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQ VEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEV KYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTI DLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSL ALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYEL PNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVL ESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLI SHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVF DLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSNSDRGFRNRRSRGG GSRGGRGGWDSDGEDRFRRGGRSFRSDNDSWSDDDFGGGRRSNRSSSFGGRGSSYGSR SSSSFGGRSSSFGSRDSSRSFSGACFNCGESGHRASDCPNK</aaseq>

Gene Sequence

<dnaseqindica>128..155#214..473#1478..1611#1709..2120#2530..2628#2934..3158#3527..3904#4287..4430#4707..4802#5103..5422#5840..5915#agccgctcgtttcatttcttatcacttcccccctctctctctctctcccccctcctcctttctcccacctctcctctccaatggcttccctcctcacgctcccctccctctccctctccaaccctagcgcctccgccgccgccgcgggagccggagcggcgccgtctctgcgcctccgcgccgccttccgctgctgggcgctgcggcgcgcgggcggcggccggtgggcggccgcgggggccatcgcgtcgcccaactcggtgctcagcgagcacgcgttcaagcggctgcagctcagcgacgaggaggaggaggaggaggagggggcctacgggagtgacgaggagggggtcgaggcggtgggtggcggggagggggacgaggacgagctcgccattgccaggctcggcctgcccgagcagctcgtatccacgctcgagaagcgcgggattacccacctgttccccatccaggtgatgccaatttgcgctccgtttcgagttttggatagcttaactgtgcttgatgtcaaattgcaggtttcggtattaggcggagacagcgagggaattggtgttagtgtaggatttgttggggggatgagttcgtggtgaataagcctgtattgagcaattcatgatggggcttgttttgatttaaaaaaaaaacagtggcgggataagtgcggcatgactcgtttagtggggaaagtgagagtagtctacgctaagttgctcctaggatatatcacttgagaattgaactgcgaaactatggagcaagtgatagctggttccataattatttttgcgctccataatatcaagattaaatttcacataactacatagtttgtggttcaagtcgcagaaaaccacaaatattttaacacttggcacttaactgcatatattttggtattgaagtttcataaaactacactatcagagaatgcatccacgccatctcgccgatggattcattcgttagttttgtgaaacttcagtactaaaacatatgtagttaagtgccaggtgtcaaagggtgtgtggtttgttgcaacttggactacaaaacatgtagttttgtggaatttactctaatatcaaactagagtgctgattgctgttccgttgatgcgtagaacttcatagatttgctgcatatcaaattcgtcctattcctacagatactgctaactatcattaaattacatatttgttatttgttgaatcaggacagttgtacgtttatccttgcttctaaaagaataaaacaatatccagttttacgtttatccttgcttctaaaagaataaaacgatatccatgtcataccaaatggcatggtgcatattatgaaatgtcgatacaaatagccaaataagtttatttccctttgaatttcagctttcacatgctcaccttgatggtgcttatttgcttgacccttttctgatttattttcgctgttccagagggctgtattgattccagctcttgacggccgtgacctgattgctagagcaaagacaggaaccgggaagacgctagccttcggcattcccatgatcaagcaattaatggaggaggatgatggacggagtgtgaggtatccattcatcttcctatgcagcttcacattgtattgcatgacaatcagttgatacttaacaagtgcattaacccttttttttcccttttggtaggcgaggtcgtattcctcgtgttttggttctagcacctactagggagttagccaagcaagttgagaaggaaataaaagaatcagcacccaagctcagtacagtctgtgtttatggaggtgtctcatataatgtccagcagaacgcactctcccgtggtgttgatgttgttgtaggaacacctggtcgcattattgatttgataaatggcggaagtcttcagttgggagaagttaagtacttggtccttgatgaggctgaccaaatgcttgcagttgggtttgaggaggatgtggaaacgatattacaacagctaccagctgagaggcaaagcatgctcttctctgccaccatgcctggttgggtgaagaaattatctaggcgatacttgaacaatcctttgacaattgacttggtatgaacttcgtatttccttccatttccatttttattggtgtgaaacatgtcactcttgttatttttatttggttatgccctcaaacaaaaacattccaggaatcagtttcatctagtataagagcattcttacatttaatcacagatatcattttgattttccaagatcagatgtgtcagttgttatgatcatgttatatgctgtaaaaatagtaaatacaaattctgtccagcacacatgtaagaggattaagagatattagcactggtcttgagtatgctaattgcacttacacttgaatacctgttgtttcttgcaagatataattgtgcacatgttctgtgaaggtttacttttattttttttgtctggattagtcatcttttattgtcatgtgtatactcaggtcggcgatcaagatgaaaaacttgctgaaggaatcaaactttatgctatcccgctcacatctacatcgaagcgcactgttcttagtgatctcattacggtatgttattgcagttcatggattttttagctgccttttcccctcctctcttttcggctcagcctcctgagattcagaaactaataagatcatgaaaccagttacagtttatacagctatgttggtgtatcatcatgccagtagatgcccgataagttttttttttttacttcaatccaattaagatttcagaacataattcattcatacatcttccatgtctatcgaactttttactgactttataactagtctgttttgctgagcgttggccactcaattatctaaaaatatcttgttatcaggtgtatgcaaagggtgggaaaaccattgtgttcaccaagacgaaaagggatgcagacgaggtatcattagcactgacaaacagtattgcttcggaggcactgcatggtgatatttcacagcatcagcgtgagaggacactaaatggttttcgtcaagggaaatttactgttctcgtagcaaccgatgttgctgcccgtggtcttgatataccgaatgttgatttggtgggttcacatatcctcttcacttcatttgattcttagatattgtaattctgtaaatcacccttcctcacagatcttaactctttcctttccataaagcgattatcagtgaagcttctgagttttaaactccattattatttacagtgctaaaattagatcatcaaactgtccatttttccccccgaacttaggtttttgtattgaaatatcatctagctttgatgtgttttatagcatctcaatctgatatcttgggttaatcttacgactagttaacaaattaactgcattcgagcattatgctatctgggatgaactgtaggtgtgtatggatcaattaacgagaggatttcattttaatgcagattatccattatgaattgcccaatgatccagagacttttgttcatcgttctggacgcactggccgagctgggaaagcaggaactgcaatcttgatgttcacaaacagccagagaaggacagttagatcacttgagcgtgatgttggatgcagatttgacttcataagtcctccagcaattgaggatgtgctggagtcctctgctgaacatgtcatagctactttaagaggtgtgcacacggagtcgattcagtacttcattccagcagctgaaagactgcaagaagaattaggacctaatgctcttgcttctgcattggcacatctgagtggattttctcagccaccctcttcacgttctcttatcagtcatgagcaggtaagaattaataagtgacccgaggaaattacatgtatccatcattaactgatattttactatttctaccattgtatcgaacacttcctttttccctaccttagttatagctacccatcaacttcatccagctgtcctgatttatgccttctacatttgaggatttatatccacctaatgttatatgaatacaatgggctactagtactgattactgaaattgcatcttttataaatttataatgggcaatcaaataattgtatagaaaagctccacttttttttttgagttgctcaaagttttgttgtgcgtttaccgtttatattttctttttaaagctagaagcactcatatgatttcttaccctctattaaaacacagggatgggtgactttgcaactaactagagatccaggatatggaagggggttcttttctcctagatctgttactggctttctgtctgatgtttcttcagctgctgctgatgaagttggcaaaattttccttacagcagatgagaaggtgagctcttgcttgagcatgtcgatcattaatttctgtgcatgagtgcattgggtctatgagcaattgagcatgcagttttgaagctgttggctgatactagttttgcagcatatatatcttctttaattaatgtgcattacgtgcaatagtatgcattgcagaaatcgatgacacatatcactactttttcatgcatatcttcaaaactcctgcatttatgtgtatgactttcactgtgatgctcatgcattggcgcattgttggttgtgtcaggttcaaggtgcagttttcgatttacctgaggagattgcgagggatttgcttagtatggaactgcccccaggaaacaccataaccaaagtgacaaaggtaacctttgcagcttggtatttttcaattattgctattggaatttatagtgcaattgctatacgtaatctgtgtgatgatacacaagtatttgtctggcgtggtggcatttccatttatttccaaccaaggcatttaaattgactttaaatggcaagtaaaatagggaatattctaccattattcttgcactacacacagtatagaatgcaatagcaatccctggtcttgttttggatgcggaattggttctttgtgagctaatgtgatgactgttttccttttgttctctgcttgcagctacctgcattacaggatgatggtcctgctactgatagttatggccgattctcaaactcggaccggggtttcaggaacagacggtccaggggtggtggctcaagaggcgggcggggtggttgggactctgatggtgaagacagatttcgccgtggtggcaggagcttcagatctgacaatgatagttggtcagatgatgactttggtggcgggagaagatcgaaccgttcgtcatcctttggtggccgcgggtcatcttacggcagtcgtagctcgtcatcctttggtggccgctcatcatcttttgggtctagggacaggtgagtttcacaacatcgcagaaataacataatgtctattcttttttcatccatgctgtatctttcttctaggagatgccaccagagaaaatgaaatacattatgagttagacaaaatttgcttacctggtaactttagaatgtttagtcttttccttagccactcatgtttgttagtactagctactcttatgaagttaagtcttgtcatatgaccaactcatgtgttgtaattaaagctttgctgtgaaattaatgacgggtttcctagctagctcttgctacagcataatcttgcctccctgaatcatggccagtgattacttgtaccttctcagtaccagaacaattacttaaacatgctactagttaactcatgctgctttcttaagctaatgagctgttcctcatttacagcagcaggagcttcagtggtgcttgcttcaactgtggcgaaagcgggcaccgagcatcagactgcccaaacaagtagatggtagaaacaacactcttccctgccgctcgggagttgctccttctgggcttgatcatgttccaacaagcggctggactattcaacacatgccaaggaacaccaaagcccagtcccccttcatctgatccatacatgcccaacactattgcctgacgaagattttgcactggttagtacagctctgtgtcgtcattccgtcgtgaagattttggcacgctgaccaccaaaggagagccttctgttcatttatatgtaatacgggttttacagggacgttaaatttttgttaccacctgggagttctcaataggatgttaagattaaatgaaccgtgtgtacagctcgttcctacacgactggactggctgatgccatcagaaactgttcgcgccaattagaatcactgtccaatgtcaaacaacttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0827700, RefSeq:Os03g0827700