Os03g0832500

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Revision as of 13:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0832500| Description = Nucleic acid-binding, OB-fold domain containing protein| Version = NM_001058337.1 GI:115456402 GeneID:4334678| Lengt...")
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Gene Name

Os03g0832500

Description

Nucleic acid-binding, OB-fold domain containing protein

Version

NM_001058337.1 GI:115456402 GeneID:4334678

Length

7200 bp

Definition

Oryza sativa Japonica Group Os03g0832500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:35816225..35823424

Sequence Coding Region

35816305..35816535,35816945..35817131,35817503..35817575,35817692..35817836,35818217..35818326
,35818674..35818805,35818875..35819016,35819092..35819226,35820825..35820982
,35821874..35821948,35822052..35822190,35822385..35822654,35823014..35823160

Expression

GEO Profiles:Os03g0832500

Genome Context

<gbrowseImage1> name=NC_008396:35816225..35823424 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:35816225..35823424 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggattctgccgccgcctccgccgatgggggcgcgttcctcgagttcgtcgactacgccatctccatgctctcctcctcctcctccgggggaaacggcgacgagtcccccggcgccgggccagcgcctgcgcggccgccgtgggggtgggcggtggcgcaagtgctcaagtcgtgctgcgcttattccagcggcgtcaccgccgccatcctgctctccgacctcttccagtcttggacagaacaaagcaagtctctgaccgcaaagaggaaagttgaattgaccaatcttctaaaaacaagaaatagaagaaggcggcttcctaataccatcacaatcgattctatccatgagaagaacttcctatctcctaagagtgtccttgaagctgttgtcattgatgtgtttgtcattcctggtacaaacatatacatgcttaccttgggagacatgtggagcacatcgactatcgatctatatctacaccgaaggtactacaactacattggacagcatgatgtcttgaagaagggtcgagaagttatgctcacgggatgttgcctacgtacagctatggagggatcaggccatgctcgtattttgccaacagaatatatggtgatgttacttgatgaggaggaagatgaagatgccatgttacttgccgcacagttttgcatgtattctttctcatctatgatgctagatgagaacagaaacaatatttcctattcgttttatgccaggatcgaaaagatcgagtctttagaaccatttggatctacagaaagaaagcagattgtacttgttgacaatgatgatgcaaaaataaaatttgttttatggggggagcaggttttgcttgcaaatcttttcagcgtagggagcatgcttgcactgcacagaccttttattgcaaattatgtgcacaataatcatgaggagtctcaggaactttgccttgaatatggcagtgctacacaggtttatttggtgcctattgctcagcaggaggaacaggtacttcttacacctactcaaataaggagtcaagggtctcgattgtcatgtgttccaagtgatcatatggcttcacaagtaacattaccacgtgatttgcatggttcagttgatttcagcaaatatccatttcgagtatacgtaagtgatcttcatgataaaatggttggagttagtctgtttggcatggtaacaagtgtttgcaaagcaagtacatcaggcacttacttttatttggagatagaagatgcaacaggagttgtcctgatgaagcttaacttcattggactctggtcgctaggcagggtaggtgttggtcatatggtgtacatgtctggtttgacttgtaccttgagttcaacaaacaagcttgaagtcgcgtggactgaaaaggaaccagggtctctatttgttaacataagcttgctgccagcgcttcttaattcaacatgcctgcataatttgtcactcttgtcagatcttccccattcaactaatagaacacatatatgccatgttcgacttgaccacatcgatgtcaacagtttgaaggtattattattccacaatctttgtgggtgtgttgtgagtgatcaatcaggcggacttcagtgttccttctgtaagtgcgcatgccatatcagtggatgtacacatggctttcagcttcacttgaccattgcagatgacagtgaaaaggtttttgcctggtgcattgggcaaacagccgtagagttccttcaaatatctcctgatgaatatatggaactccctgaggatgaacgagcaatgtatctctatactcttcagaatgagaattttacggtcgctattgcaaataccagccagcggattgaagcgtatattgaaggcgagaaatttcttccagtatgggagatcacaagagcccaaaaatgcgagtga</cdnaseq>

Protein Sequence

<aaseq>MDSAAASADGGAFLEFVDYAISMLSSSSSGGNGDESPGAGPAPA RPPWGWAVAQVLKSCCAYSSGVTAAILLSDLFQSWTEQSKSLTAKRKVELTNLLKTRN RRRRLPNTITIDSIHEKNFLSPKSVLEAVVIDVFVIPGTNIYMLTLGDMWSTSTIDLY LHRRYYNYIGQHDVLKKGREVMLTGCCLRTAMEGSGHARILPTEYMVMLLDEEEDEDA MLLAAQFCMYSFSSMMLDENRNNISYSFYARIEKIESLEPFGSTERKQIVLVDNDDAK IKFVLWGEQVLLANLFSVGSMLALHRPFIANYVHNNHEESQELCLEYGSATQVYLVPI AQQEEQVLLTPTQIRSQGSRLSCVPSDHMASQVTLPRDLHGSVDFSKYPFRVYVSDLH DKMVGVSLFGMVTSVCKASTSGTYFYLEIEDATGVVLMKLNFIGLWSLGRVGVGHMVY MSGLTCTLSSTNKLEVAWTEKEPGSLFVNISLLPALLNSTCLHNLSLLSDLPHSTNRT HICHVRLDHIDVNSLKVLLFHNLCGCVVSDQSGGLQCSFCKCACHISGCTHGFQLHLT IADDSEKVFAWCIGQTAVEFLQISPDEYMELPEDERAMYLYTLQNENFTVAIANTSQR IEAYIEGEKFLPVWEITRAQKCE</aaseq>

Gene Sequence

<dnaseqindica>81..311#721..907#1279..1351#1468..1612#1993..2102#2450..2581#2651..2792#2868..3002#4601..4758#5650..5724#5828..5966#6161..6430#6790..6936#atctcgtttttttttttctttttcgcgcccgtctccttcgccttcgccgtctcccccgccttcctcctgtctagggttccatggattctgccgccgcctccgccgatgggggcgcgttcctcgagttcgtcgactacgccatctccatgctctcctcctcctcctccgggggaaacggcgacgagtcccccggcgccgggccagcgcctgcgcggccgccgtgggggtgggcggtggcgcaagtgctcaagtcgtgctgcgcttattccagcggcgtcaccgccgccatcctgctctccgacctcttccaggttagacatttttacttgaattcaaactacatctcgaggatgcaactctttctccaagctgttacagtttctatttgtgccttgtgctcgttgttagaatcaaatttgttctgaatgcgattccggatatatcgaagaatgtcgaaccaatgtgatctctatatcgaaacagaaaagggcatacataagcaattattcactaatcaccccccatagattctggcaccgctcaagcaagtggcttatattatttttccaaggataacacaatttggcaatccatgcttcttgcttgtgtacagactaacaaatgcaaacccatttcaaatccatgattgcattttttttcaccatttcttttcgcattggacatgtggattagcctttaaatattttctgcttttgctagtcttggacagaacaaagcaagtctctgaccgcaaagaggaaagttgaattgaccaatcttctaaaaacaagaaatagaagaaggcggcttcctaataccatcacaatcgattctatccatgagaagaacttcctatctcctaagagtgtccttgaagctgttgtcattgatgtgtttgtcattcctggtatgcttatactttgcttctatcaaacaaagaaactatatctgttagctatttttatattttttagcctgggccagccaaatttcattaagattatgagtggtgttacaagctatttttatattgtatcagaatatttgtcctctgcagggatgtttagtagtaaacagaatgcctattagttctctatgtcatttttcctcaacaagggcacaagttaaatcttatgaatatccttgatcattggattatcattttttccaacatgatccttgaataaatgtactgataaaattaatcgcttgaacttgcactttatatatggctgctaacttgcattttcttcgattacctcctaaactgtcttgtaggtacaaacatatacatgcttaccttgggagacatgtggagcacatcgactatcgatctatatctacaccgaaggtagatctgagtatgactatttattgcttagataatgctacttaataatgcattagaaatccatcagtgaatgaaggtaaaattgttactggactgactctaaattttcatgttaggtactacaactacattggacagcatgatgtcttgaagaagggtcgagaagttatgctcacgggatgttgcctacgtacagctatggagggatcaggccatgctcgtattttgccaacagaatatatggtgatgttacttgatgaggtacctaagaaacacatttaggtttataaggaagtggagttcacaacatgttttttgttttcagcttgtcatttcttgggtcaattttcttttttcttttaattcactttcatccctcatggttcttcatcgttcacagtgataatagattacaaaaatatcttctaaacactaaacaatttcattgttctttactcagccctcagtaaactagctgctaacttcttgcttcttataaggattcaatactagtattaagctgctagtagaagttaaaattttgcatttgtgctgtggagtgctagatgcaactggttcaattttttttctcgtactatatcacacactatttagtttcgactcatgtttaatttatacaggaggaagatgaagatgccatgttacttgccgcacagttttgcatgtattctttctcatctatgatgctagatgagaacagaaacaatatttcctattcgttttatgccaggtatattagatatattgtactttttagtttttaatggtgacattttttacattcgccctgttcggcagctatcgctgctgcagctgctgctgtacatagtctcttcaagccgcagcaattttgaacttctgccgccgcagctgctgctgcaaaaatgccctctgaacacaccctatgtgtactgctgtggctatattagcacaacacattcagttaccaacactatgatttctggtaaaaagaagaagaagagcttatctatccagttgagaatataagttgaatagaatgaaccaaatcacttgaccttgaacgatttgtaacactgctatttctttgccctgtaggatcgaaaagatcgagtctttagaaccatttggatctacagaaagaaagcagattgtacttgttgacaatgatgatgcaaaaataaaatttgttttatggggggagcaggttttgcttgcaaatcttttcaggtttattccactcaatataagtaccaaatgtctcattcaagttattgtaaactaaactttctattttagcgtagggagcatgcttgcactgcacagaccttttattgcaaattatgtgcacaataatcatgaggagtctcaggaactttgccttgaatatggcagtgctacacaggtttatttggtgcctattgctcagcaggaggaacaggttggtatgaatatcttggtgctacatctttttgcactactccttttgaccaagatggaaatgattgtgtgctaggtacttcttacacctactcaaataaggagtcaagggtctcgattgtcatgtgttccaagtgatcatatggcttcacaagtaacattaccacgtgatttgcatggttcagttgatttcagcaaatatccatttcgagtaagtaacctgaacttcatttttctgagtttatttttacagataaacgtaccaattattatgttgcttacttgcttgggaactgaaggtttattggtttagcatataacgactgattctattcatggtttaatctgcatcgagttatattgttcagatcttcattatcaacaaagcaatactattgtgtttatcttaacgtgctgaatgaatcatctgaaaactagcactcgatcccttattactgactaatatgtgtagtaatttattagtatataatttgcggtaatattgtttaagtgcatcttgtgctctcattccatgggcttcttagtaatgcaggtgtaatatatctagtaacataaacatatgtgtggtctgctgttttacttggtagaaatatgttttcagaagtatctatgtttcatgcttcccgtatcattttgttgttttcatctttttcatgatcatctactattatagcagcatttgaaattcttgattccttgaaataaagggaaatcattgaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacggtcatgctacgtagtgcgtagcgcgccatcgaataggtagcgccctcgggcctcaagcctccagttcagcgccttcgcttcctcttttgccgttctcaccacccgatcgaccttcccgttctctttctcaaccacagtaaaaaaataactgcctctcaccatgtgtcactttcccatgggtcccacaccatcaaatcaacttagtgaaaaaattactatcaagtactagagttatcagaaactagcaccaacatccttcagttatatttttacttaactgtgtttttcattttctttctgttaactgtattttctatagttaaatttttacttaactgaatgttgcagtattgtatttttctttttttctattaattgtatttttaggtaccaatatcctttagttatatttttacttaactgcagttttcattttatgttgcagtattttgtatttttcgtttttgctattagcattttcagggacaaacaaaaggttgcagtgcagtagtacaattagtccctgtatggatggtaaaaattcaccaacacgtagaataatctatttccttaggtaaaagtcagtagtaatttttttactccactctgatgagtgtacaatgaagcataggtgcagaaaagactacacacggtaaaaaagacacgtggatggtagtcagaatttaactattacgtcaacataggtgggttcaggatggggggtgggggtgtgcgcagttggtgggtctaaatcactgtgtcaggtgccgtttaataggtagcaccttaaggtgccatatagtagctatacacacacacacacacatgctgtctttcttgccccgtggtctgtggatcatgtttgtttttagtctaatgcaacttttataccatataaaagtatttatcaattatcatgcatgcagtaaagttcccgtgatatattcattgctgtgtgcttctataacatgtctaatttttaggtatacgtaagtgatcttcatgataaaatggttggagttagtctgtttggcatggtaacaagtgtttgcaaagcaagtacatcaggcacttacttttatttggagatagaagatgcaacaggagttgtcctgatgaagcttaacttcattggactctggtatcagtttttgtacttatgcaatgatctagttttcccactgtctattccctattttgtctgaaaatgatttgcttatttgacttaaaatatcaccgggattatttgacttgaaatacaaaccaaaattcttcttgtactgatcatagtgttgagtgtcaaatttgcaatatcctggcatatatgctttggtagtttggatgagttaatgtgtgctaggtttaaatatagaaagctggtcaacgtactaagtttcaaacagtttggagcctggcaaataaatatccaatttgcttttgcactgagcaggatatcattgaaataggaattcatcaagtttcttccatctaagaactgattgttttgtcattttctgtttctgttatcaaatcaatgctgagcctttgatattcattttatattgcaccaaatcaattgcatcctgccataagaaaaaccaagtgcatcctctttatctatttcctgtgaacgcgcgatgttctgaagtctataccatatcttttttttttctgattggagctgttgttatatgaactgatgaattctgattagaaaattcatgaggtacctaaattgtacactgtatgcaagtctgcatggtcttatacaaagatttgatgttatgttcactggtttttttatgttgatgccatgttctgcctgacagcctgtgggtaatgaattcttaaagattaaggtccatttaaaagtgtggcattgactcttcagtgttctaaattcgatcatttttgtttagtgttcttcagataaggttaccttttttttttttacaaaattgtcatttcctatgccagctcatctgcctctactatacttcaattcgatccatttatagatatatttatgcaggtcgctaggcagggtaggtgttggtcatatggtgtacatgtctggtttgacttgtaccttgagttcaacaaacaagtaagcactatattccttttaatttcatatgctcacaatttaaatgtcgcaataattgcttgatggtgaaaaattctggttggtggactatttggtgtgacaggcttgaagtcgcgtggactgaaaaggaaccagggtctctatttgttaacataagcttgctgccagcgcttcttaattcaacatgcctgcataatttgtcactcttgtcagatcttccccattcaactaatagaacacatgtaagtcttcattattattgtgacatcttctgaagcatttacattttagttcttttagatggaatcgcagagttatcagtgacattttagaaagtattttctggtacctattttgtttgttttaagaactttgcattcttcatttgtgttgtcgttcctaatatcctgattgtgtttgatatcttaataaacagatatgccatgttcgacttgaccacatcgatgtcaacagtttgaaggtattattattccacaatctttgtgggtgtgttgtgagtgatcaatcaggcggacttcagtgttccttctgtaagtgcgcatgccatatcagtggatgtacacatggctttcagcttcacttgaccattgcagatgacagtgaaaaggtttttgcctggtgcattgggcaaacagccgtagagttccttcaaatatctcctgatgaatatatggaactccctgaggtattaaccaacaaaattcttacacatgtacctaataatcgagaacaccttttcaatacgcatcacttgccactgcctgggatattttacggaacaattctgtggtgatagtttttgcatataaacttacctggttcactgccaaagtctcagcttagtcactattggtctcattcctgcgaactcataggtagcaagtcctgatacttacatgtttcggcacacgaaaacggtatagctaatcctgtaattttgtgcatcatgtagcatcagcctctttttttctttactagacttgtctatgcctgctaagtttctgttcctattcttattaaaaattcccggtgatgaattaccaggatgaacgagcaatgtatctctatactcttcagaatgagaattttacggtcgctattgcaaataccagccagcggattgaagcgtatattgaaggcgagaaatttcttccagtatgggagatcacaagagcccaaaaatgcgagtgagatccttgagctggatttggtagctattgcagaagaagaaaggcggcaatattaataagtttatggtatatcaatcgtaaaactattcaggattagcaatggaatggagcatctttgtatctgactcgatgatcttgtagtgtttctcgctgatgtgttttctgttcatatgatgcacgcctgcatctctgtcctgtaatgtggttcgcggttgtcaattgtgaggaagtaaaaacaatttgccagcagaattagctatctggt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0832500, RefSeq:Os03g0832500