Os03g0834000

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Revision as of 13:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0834000| Description = Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b)| Version = NM_001058349.1 GI:115456426 GeneID:4334691| Length = 5454 bp...")
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Gene Name

Os03g0834000

Description

Flap endonuclease-1b (EC 3.-.-.-) (OsFEN-1b)

Version

NM_001058349.1 GI:115456426 GeneID:4334691

Length

5454 bp

Definition

Oryza sativa Japonica Group Os03g0834000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:35897414..35902867

Sequence Coding Region

35897447..35897458,35897553..35897669,35898299..35898357,35898448..35898507,35898744..35898797
,35898879..35898927,35899040..35899087,35899436..35899501,35900138..35900188
,35900279..35900398,35900468..35900552,35900975..35901056,35901213..35901321
,35901398..35901452,35901550..35901598,35901678..35901735,35902322..35902486

Expression

GEO Profiles:Os03g0834000

Genome Context

<gbrowseImage1> name=NC_008396:35897414..35902867 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:35897414..35902867 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcatcaagggtttgacgaagctgctggcggagcacgcgccgggggcggcggtgaggaggcgggtggaggattaccgcggccgcgtcgtcgccatagacaccagcctcagcatctaccagttcctcattgtggtaggaaggaaaggaacagaagttctgaccaatgaggctggtgaagtcacaagtcatctgcagggcatgttgaaccgaactgttaggattctagaagcaggaataaaacctgtttttgtgtttgatggtgagccacctgacatgaagaaaaaggaactggcaaaaaggtctttgaagagagatggttcttccgaagatctaaatagagctattgaggttggagatgaggatttaattgaaaaatttagcaaaaggactgtaaaggtcacaaaaaagcacaatgaagactgtaagaggctgttaagcttgatgggtgtccctgtagttcaggcaccaggggaggcagaagcacagtgcgcagcactctgtgaaaatcacaaggtctttgctatagcttcggaggatatggactctctaacttttggtgctagaaggtttcttcgccatttaaccgacctgagttttaagagatctcctgtaacagaattcgaagtgtcaaaggttttggaggaacttggactcacaatggatcagttcattgatttgtgtatccttagtggctgtgactactgcgagaatattagaggtattgggggacagagagctttgaaacttattcgtcagcatggttatatagaagaagtagtgcaaaatcttagccagacaaggtatagtgtcccagaagactggccttaccaggaagttcgggcattgtttaaggaacctaacgtttgtacagatattccagacttcctgtggaccccaccagatgaggagggccttataaactttttggcagccgaaaataatttcagtcctgatcgagtagtaaagtctgtagaaaagataaaggctgctaatgataaattttcccttgggcgagggaagcttttggcaccagtagcgaacttaacaggatctacatcaactgcagggaaggaacccaaatgtatcctgggtggtccagggcaagtcatgaaggctaggtcacctctacaagtgtgcaagagctcaagcttgaacttcatacatgacaattcaaaagcgttcatgctgggcaggcgatcaggatttctcagaatatctacatatgcttccatctga</cdnaseq>

Protein Sequence

<aaseq>MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLI VVGRKGTEVLTNEAGEVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRS LKRDGSSEDLNRAIEVGDEDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEA EAQCAALCENHKVFAIASEDMDSLTFGARRFLRHLTDLSFKRSPVTEFEVSKVLEELG LTMDQFIDLCILSGCDYCENIRGIGGQRALKLIRQHGYIEEVVQNLSQTRYSVPEDWP YQEVRALFKEPNVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDK FSLGRGKLLAPVANLTGSTSTAGKEPKCILGGPGQVMKARSPLQVCKSSSLNFIHDNS KAFMLGRRSGFLRISTYASI</aaseq>

Gene Sequence

<dnaseqindica>34..45#140..256#886..944#1035..1094#1331..1384#1466..1514#1627..1674#2023..2088#2725..2775#2866..2985#3055..3139#3562..3643#3800..3908#3985..4039#4137..4185#4265..4322#4909..5073#gcttggtcatctccgccgccgccggccgtcgccatgggcatcaaggtatatgcatatatagcacgctcttatcaccgaagcgctcgatgtgacgtcactctcgctgactctcctctgcctgcgcgcgtgttcgcgatagggtttgacgaagctgctggcggagcacgcgccgggggcggcggtgaggaggcgggtggaggattaccgcggccgcgtcgtcgccatagacaccagcctcagcatctaccagttcctcgtgagtttccccggccgtggcggcgtccctccctctcttatctactctactcccttccgcttcagttgtgagtatgattgtagcaatcgtgttatcttgttttgggaatgccttgattcggggaaaatttagtgatacctgcctccgtggttaagtggtggcgatctacagtcagttggagttgggttttaacttctaattcacattaaaagtttgagcaaatgcaaacagtggcgaatggtggcgattgtgcagtcagttggagttgggttttaattcgcattaaaagtttgaacaaatgcaattgtgcaaacacttcgtatcaccagtagcttctatgtataggaagtcagtggcttaatgccatgagcggagcctcaatttctacggtgtaagatagtagcaaacttatatgtagaattgtagacaaaaaggacatggctaatgatgtgaattcactgccaccaataccctttgcattgataccctgttctgattgactgggaaaccacttggtagcgctcgccatctaactagtgatattattttatgctgggaaaaaagcttattgatggattgttttgggggtaaggggattcagatgttctgtgtatatgacatttctgtagattgtggtaggaaggaaaggaacagaagttctgaccaatgaggctggtgaagtcacaaggtgagggaaagtacactgtaccctgctggtgaactcatgtggttatgacttcttttagataaaagaattttacatgcatgtgaattgtagtcatctgcagggcatgttgaaccgaactgttaggattctagaagcaggaataaaacctgtgtaagttttgatgcatcctgtattccctgtttattgctagctactccctccgtttcacaatgtaagactttctagcattgcccacatacatatagatgttaatgaatctaaacacatgcatatgtctagattcattaacacctaaatgaatgtaggcaaatgctagaaagtcttacattgtgaaacggaggaagtactgttgttgacaggaactaaatgctaaaatttcataccagttttgtgtttgatggtgagccacctgacatgaagaaaaaggaactggcaaaaaggtatactctgaatagtgcctttgctttgattgtttcttgtgagtgtcagtatttttatttcctatgtttaccactctttaggtctttgaagagagatggttcttccgaagatctaaatagagctattgaggtcatctgatcctaaccgtagtactattgcctccttcttattgtacctttttacttttggggtgatttatctgttattgcattgcacctctgaggcagcatttatgttacaggttggagatgaggatttaattgaaaaatttagcaaaaggactgtaaaggtaattacctacgtttgggggaagtgagccaatcaaaagtttttacagtaactttaggaaatacttcctccgtttcacaatgtaagtcattttagcatttttcacattcatattgatgttaatgaatttagatagatatatatgtctagatacattaacattaatatgaatatgggaaatgctagaatgacttacattgtgaaacggagggagtaatatgttaatggattttttataaagcagcatcacaaaatctgccatttcgagatttgtcttcacaactcaattagatcgtctataaaatcctgctgttgtccaaagcattaatcaccttttttttcttcacaggtcacaaaaaagcacaatgaagactgtaagaggctgttaagcttgatgggtgtccctgtagttcaggtacaattcgtgcttaatccatcagtttcttcctagtcttcgttttaccacaagatgatcagacgagacaatcaactttcctctttgatatgctttcccaactccctggagagttagcagaccatttggaaattcttataaccaaaagaaggaaattgcaccagcctcactcatagagttgctgcttgtgatccggtggtcttaaacttatgggtcaacatgtcataaagcttagattatcttacatagggttctattgcaatggcttcaggcaacagtaaactacgtaagaagtccagcttatgagaattctagatgttaaggcctgctcagcttttgcatgtgtagatgtttgtttggtattggcctaagttggacttgctgttatgcttgagcgctagctaggataacccggctttggtatacatgcagtattagattggtggaactttagcaatcaacaattggttcttatgttatagacatcaccacacgtgggacataattctatttctttttgctccatttgagcaacatgccatacctatgatctcagggcaaagatgcaagcatgatacttggctttaatgagttttcactgttatttctaatcaattcatggtatcacatatgcaggcaccaggggaggcagaagcacagtgcgcagcactctgtgaaaatcacaaggtctaacaagccgatgattttattacaaatttatgtcgatgccctcgtcacatgaccgaattatattttactctgagttgtgactgtcaggtctttgctatagcttcggaggatatggactctctaacttttggtgctagaaggtttcttcgccatttaaccgacctgagttttaagagatctcctgtaacagaattcgaagtgtcaaaggtaatgctttagtaaatttcatcatcaacatttttccgagcatcatggcaattatttgttggcttccaggttttggaggaacttggactcacaatggatcagttcattgatttgtgtatccttagtggctgtgactactgcgagaatattagaggttttatcacgttttttcttttttcacacacttaatattagattctaccaatgatatcatattaccatgctgtattcagaatttagaggttgcttcattactttctcatgtcatgggtgctttagacatagcattctccattgctaatgtatctataatagaaatgtggaagtgtgatatcctattcttgagttaaaaacttcaaattatattttctgcaattgcttttatagctcaacgctttgtgcttctgttggctaaatcttgaataaatgccactcaaagttctaagaagattgtagagatatcataatgctggagaattgaatgttgtgtatgctgcatccttccttgactatctttatcataaatttatacaagtccttgcattttattattacttcttgtcttgttttgaataggtattgggggacagagagctttgaaacttattcgtcagcatggttatatagaagaagtagtgcaaaatcttagccagacaaggtatgttttccatgggatttatgttaaattgatgacctggttcaactggcatttctttagtttgttgttccattttctgagtaatcttagtttctaggttttaccatatgcttcattttttttttgagaggtaccgtatactttcttgatctgtaggtatagtgtcccagaagactggccttaccaggaagttcgggcattgtttaaggaacctaacgtttgtacagatattccagacttcctgtggaccccaccagatgaggaggttatgcttggtagttgcccataccacacggcccctgttgtttatcatgctgacagttcttgttttctttgtccagggccttataaactttttggcagccgaaaataatttcagtcctgatcgagtagtaaaggcatgagtgcatcttttatttcacttatatattaataattccccttatgcatattattgtgaaacaattgaccctttcccttatattcattcaccagtctgtagaaaagataaaggctgctaatgataaattttcccttgggcggtaagcaacaacagttaacatgttatcttgtggagaaatatccatgcagttctgaagtggtgttttttaattgtttcagagggaagcttttggcaccagtagcgaacttaacaggatctacatcaactgcagggaaggtacagagctacttattgtttcatctctcttatttactttggctcactaacatattgcacgggctacacatgcaatcatgatatccagcctacaccctagctctctgaaaattggttctatcgcattattgcataacttactgttctttaggtttcagttaattgtggtgtgtattttctctatctgggctgaaatatatctgctgttccatgatttgaattctgatagccgtttgtagctccagaaggccagggtagtgttgttttctattttactttttttacatggattctttttttacccttaaagtatatttcttcatagcaacatgggtttaatttttcgttgagttaacggatgctacataccactgcaattcgtccaattgtaacctcatatatagttgattatcatcttttcgctcctactgttctattgatacgtgctcgtgttctttgttctttctttgttgttctttcttctgccatcttaccatgtcgggatacattttgtgtaacatatggaaaaagtaggattagtgtaacatggatccttacctagtccatcaattgtcttggataacaggaacccaaatgtatcctgggtggtccagggcaagtcatgaaggctaggtcacctctacaagtgtgcaagagctcaagcttgaacttcatacatgacaattcaaaagcgttcatgctgggcaggcgatcaggatttctcagaatatctacatatgcttccatctgaatctggagctgctctatttccatgagttggttggctgaagctttgactgacaccatctacagcttcatgaagaattagtgatttcttgaaatgcgttgagcctatgctattattgtagttcagccttttgccttgtaaaatcaagttgaatgcttgagctttctcacatttagcactggttctcgcttgagtgttgaacggtgaccatgaagaatttgatcaccttttggctataatctgaaattttgtcaaggtgccagaacgagcaggaaactggttgaggctgcttaactttcctggtgtcttctctaggatgtgcatgtacccctctccatcacatacttgaattgtgatagccttagcatgatctgtattaatctt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0834000, RefSeq:Os03g0834000