Os03g0843500

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Revision as of 13:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0843500| Description = Similar to Sarcoplasmic reticulum protein (With alternative splicing)| Version = NM_001058399.2 GI:297601968 GeneID:4...")
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Gene Name

Os03g0843500

Description

Similar to Sarcoplasmic reticulum protein (With alternative splicing)

Version

NM_001058399.2 GI:297601968 GeneID:4334750

Length

6029 bp

Definition

Oryza sativa Japonica Group Os03g0843500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:36297174..36303202

Sequence Coding Region

36298785..36298923,36299024..36299082,36299919..36299981,36300183..36300244,36300845..36300998
,36301119..36301198,36302193..36302256,36302338..36302506,36302609..36302661
,36302908..36303054

Expression

GEO Profiles:Os03g0843500

Genome Context

<gbrowseImage1> name=NC_008396:36297174..36303202 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:36297174..36303202 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatgcgatgaggaagcaactcgacgtgctcatgggggcaaaccgcaacggcgacgtgcgggaggtcagccgcaagtactacgaccgcgacgtctgccgcctcttcctcgccggcctctgcccccacgacctcttccagctcacgaaaatggatctcgggccttgccccaaagttcattcgctgcagctacggaaggattatgaagaagtaaaggcaaaaggaacagaaaattatgatagggaactcgaggaaatgatagacaggctcatcgtggagtgcgagaggaaaattcagagggcgctgaagcgtcttgctgatgaggatgccaaggctgctattgcaatatctgtttctgaggttactcagacagatgaggtgttgcagttgtcaaaggagatcaaggaaaaaatgaaagaagttgatacctatgattttgaagggaaaactgatgataaaatcaagaccatggaagtggtggaagaattaagatctaaaagggctgacatgcaggctacccttctgcttgatgcctttaacaaggacagagcttcattacctcagcctactccaacacctcaaatggcatcagtaccagcacctgctccccctgatgctcgcactcaagaaatgatcaacgaaaagataaagaaagctgaagagcttggtgaacaagggatggtagatgaagcacagaaagttatggaagaagcagaggctttgaaaaagttggcagcacggagggaaccaacttcggatcctactaaatatactgctgctgatgttcgaattactgatcagaagttgcgtctctgtgacatatgtggagcatttctaagtgtctacgacaatgatcgacgccttgctgaccattttggaggaaagctacatttgggatacatgctgattcgtgagaaactgaaagaactacaggtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaa</cdnaseq>

Protein Sequence

<aaseq>MDAMRKQLDVLMGANRNGDVREVSRKYYDRDVCRLFLAGLCPHD LFQLTKMDLGPCPKVHSLQLRKDYEEVKAKGTENYDRELEEMIDRLIVECERKIQRAL KRLADEDAKAAIAISVSEVTQTDEVLQLSKEIKEKMKEVDTYDFEGKTDDKIKTMEVV EELRSKRADMQATLLLDAFNKDRASLPQPTPTPQMASVPAPAPPDARTQEMINEKIKK AEELGEQGMVDEAQKVMEEAEALKKLAARREPTSDPTKYTAADVRITDQKLRLCDICG AFLSVYDNDRRLADHFGGKLHLGYMLIREKLKELQVHSCIPDLPQVKFLGNDN</aaseq>

Gene Sequence

<dnaseqindica>4280..4418#4121..4179#3222..3284#2959..3020#2205..2358#2005..2084#947..1010#697..865#542..594#149..295#ggttgggttggagtcggagagccgagagcgtctcgccgcctaccgctcgctcatttgggcagaaaccctagccctaggcgagcccctaaaccccaacctcgcccgcgatttcctccccgagggcgtcgaggggaggtaggttggcgccatggatgcgatgaggaagcaactcgacgtgctcatgggggcaaaccgcaacggcgacgtgcgggaggtcagccgcaagtactacgaccgcgacgtctgccgcctcttcctcgccggcctctgcccccacgacctcttccagctcacggtaccttcccccttctcagtatccagtatccactcatctccatgatgcttctctgtgttttttttttctttgtgggaggttaatttggtgggtaagcgcttggggtcaggccgtagattagggttcggagtgtaaatcaatattattagcctattgcgttggtgtgaatcaaaatctaggttctctcatttgagataatttcgtgctgtgattctgttaactaatcggctaattcattcatggcagaaaatggatctcgggccttgccccaaagttcattcgctgcagctacggaaggagtatcctttgacttatggaacacttcatctttctccttttaaaatattccgcactctactgtatagagtatagtggtctttgccttcctgaactgttcgcagttatgaagaagtaaaggcaaaaggaacagaaaattatgatagggaactcgaggaaatgatagacaggctcatcgtggagtgcgagaggaaaattcagagggcgctgaagcgtcttgctgatgaggatgccaaggctgctattgcaatatctgtttctgaggttactcaggtatttatccaactatatgcatcgaaacttatttgtctagaacttcaattgaattgcttgcttgcttgttaacatttgcagacagatgaggtgttgcagttgtcaaaggagatcaaggaaaaaatgaaagaagttgatacctatggtaacgatatttaaatacactagctgaatgcacatgctttgcgtcagaatttgaaaaagagaaccccaccatacactctaaagccccctaaacaacaacaataatatccccattgttatcaatatttcccaaaaaattgtacatctacgtcaagctacatagttcctttaatatatatttgtacactcgtctatagagaagttcacttactcaccagtaagggtccctcatggcagtggtggtgggtggtgagactggtgacaaacaccattcaccaccaccattggagtcctctataggagtatatacaatatttatatacacagggttccagtgatcctatcaactacagggtgactgctaactgtcttttcaaagtattcactctcagtttacagggatattgtaaaagcatcttattaatctctttaggcctaaattaacagctactttaaattgtaaaaaccctttagttgcttttactctcaaaagattaatcaaggtggtttgaagatgtggttaactgtccaagcagttagatgttactgttgtatatgtacaagtgttggtgtttatagagggattatgcactaaaaattctcttaactgcaatgttgaacactcattcatcaaatgcaacttcaatgagcagtaattttgtccggatgtggataatttgtttcaacgtagtctttacttgatttgtcaacatacagaagggttctagcatattactccctccgtttcatattataagactttctagcattgcccacattcatatagatgttaatgaatctagacacatataccacattcatatagatgttaatgaatctagacacatatatgtgtctagattcattaacatctatatgaatgtgggcaatgctagaaagtcttataatatgaaacggaggaagtacttggtttcactagttcgtagttataagttttactaccaaaatacttaatctttctcgtcaacatgtagattttgaagggaaaactgatgataaaatcaagaccatggaagtggtggaagaattaagatctaaaagggctgacatgcaggtattattttgaaagcttgaatatatgtgctctcgattctcatagtttgtgtataccagcacatgtaactaatagtaaataaagttttaatcctactggcatttttcttctttgttgcaggctacccttctgcttgatgcctttaacaaggacagagcttcattacctcagcctactccaacacctcaaatggcatcagtaccagcacctgctccccctgatgctcgcactcaagaaatgatcaacgaaaagataaagaaagctgaagagcttggtatgaaaagaaccgctctactttattactaagtagtatgcatgcgggttgttttcttctgtgaggttactggctcagttacaagggccaagatatagtttatttttgtagtttatctcagtttcactcactcagttcacagcacatacagtttctagtagcaatatgaactatttgctagtcaggcagcagtgctttttttttcccttttatacctatcaactccaatcttttcaagctaagatgctatttttgcagtgtactccatccgtcccactcactaaggcgcacacgcattttaagattcaaatctttaaatatttgaccaataaatagtttattataaattaaagtttatttgattaaagtaataattggactatcatttaaatttactttcatatgattatgattttgttgttacaaacattatagtatatgagaaatttaaagtcaaagatttgtcttgaagactatgccaagtttgaccgcgccttagtgagtgggatggagggagcatttgcattggttatggtgctagtagttttttaatgacataaagaagtttatgtgatataatcttgctcatccttttgttaggtgaacaagggatggtagatgaagcacagaaagttatggaagaagcagaggctttgaaaaaggtagatatcgtcatgtacactgactatattgtgtccatcctttcacagcctagtactgggttaatttctagcctttcaattgctggcagcataaatgataactcttatttttttaggacgttggcattttgtctatttttctgtggttgtgtagatcatgactaatgccttccattattgttgctgttgttctatgaccagttggcagcacggagggaaccaacttcggatcctactaaatatactgctgctgatgttcgaattgtgagtttaatcctaacatggttaattttatttgattacttatttttgttgtattaatttacacagtgctatcactagctttgccttctttattgaagaccagtagattctgcaatgcttattgtcgccttagacacacttggtttgctactagttattcaatgatattttttgcccaacacttgggttgctaaagagctttttttttttctataagattttactctgtactgggatgctgataaaaaatatgcatttcctggacatgtatttaaggacatttttataaaattctgtacattttgatagagtctgctattaagtgaaaactcatattttatgcattaagaaatttatgcttatcatgcaagctattgttgctctcaagggggtatgtatcattgtctggccatttgcacatatgttactagaaaagtgataagccgattattctataatcttggagtacatcttttgcaacaccatccccatagttcagttctttctaaaaattaccatgtccattcatcatatttagatgctttcttgcttgcaaactgaaactgtaatgaacttggtctaacttgcggttatatatatatatttcttgatagactcgtagatgtgaatttcttgatatcgtagaatgtggtgacttagtggttctatgcatatataattgtactatctcaaaattttagttggtgctttcattttcatactggaattttctatttatcatttatattataattctatttcaaagtatggcttactgttgtttatacattgtactattgctaatggagtaatggtattcccggttcattttgtagactgatcagaagttgcgtctctgtgacatatgtggagcatttctaagtgtctacgacaagtaattccttttagctccttttgctcccaaaatgttctgaaacttcatatttaattcacacctttggtaggaaatatgtctcatgctatattgtatccagtgatcgacgccttgctgaccattttggaggaaagctacatttgggatacatgctgattcgtgagaaactgaaagaactacaggtacattcttgcatacccgacttaccgcaagtaaagtttttggggaatgataattaatttagaattccaaatgtctactgccctaaaggcataatcacaaaaagccaagaaatctacacaatcttatttgaccttatattctgtttgtacattatgatccaagtatgtgggttttgtgctttctctgaatttgttaaggtggaaattttgtacatctttatcaggtgctgaatgttatgtaccctttactgctttaaagagttactctgttttgggccttttggcatctgtgagttttcttatctcaaggaagaaccttcaggttctcaccttctctatatattatttcatttctcacattggagggcacagtggctactacattagtcgttacaggaactagtcaatgttgcataattggaatctcgtcaatgttgcataattggaatctcatgtgccaatcatccctcctatccatgggaacaacagctgtcatgtacagttgcaaatgtaagcgtaggagtgtgcaaaacatggtatggacaatcatgtttacttaattgtgtcaagctgctcatataatctgcttagtattatgttgatcagaagctggagattgttttctgctgggtgatccatattttgtagagatggtgataaatagtaccggttaagttactctgaaagtgcactccttttgccatcttttactgtaagtactaagtttgtaaattaattgctggagcaatttaaccgtaatgtatctcttgcaccttttttttatatatatgttactttttttcctttatctgtttccctcctatgcaaattggagccttgatatcatgattttatcattataaaatattctatgccgccttccaggaggagagaagtaaaagaaggaaggcacctgaagatgacaggcggtatgtgcttttccatcctagtttcattttcatgtagtgtcagcataatctgaaagtacatgctgtgctcatcagatcaagagaatacagcaaggaccgcaatggtcaggcatccagggatagagattcagaaagaaaggacagagttgaacctcgagaaagcagaagagaccatgatcgtgatcgggataggcgccacgatagggaccgccgccatgatcgcgatcgggatagagattatgaccgttcgcgtggccatgattcaaggagaagggaacgttctcgatccagggagcgcaggtatggttcaatggtttctttgctcacttctctctgcctttcttgtatagcgatttattccgaccataaacttttgacagtataatgacaaagaaacacaatgaaattatctgcttttgatatggaaacctttatatcactaggagctaacattagacagttgttattttcaggcgccacgatagatactgaatctggtgctccatgatggctgattttggagtattctggtttttctacatgatacttgtggtcctccgagatattgtgtttgttgagcttttactgaagaactctggagcatggatatatgccgtcagactgtgctgtatgcatttgtttctgacctactatggttggccagcatatactactttatatcatacttatggtgtaccaaagacgattttgtgttaatcaaaactagtttttcccagcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0843500, RefSeq:Os03g0843500