Os10g0375600

From RiceWiki
Revision as of 08:36, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0375600| Description = Similar to ER66 protein (Fragment)| Version = NM_001071005.1 GI:115481753 GeneID:4348485| Length = 7235 bp| Definit...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os10g0375600

Description

Similar to ER66 protein (Fragment)

Version

NM_001071005.1 GI:115481753 GeneID:4348485

Length

7235 bp

Definition

Oryza sativa Japonica Group Os10g0375600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:12192690..12199924

Sequence Coding Region

12192876..12192924,12193683..12193802,12194699..12194814,12194886..12194974,12195174..12195216
,12196057..12196201,12196330..12196449,12196528..12196847,12197058..12197432
,12197537..12198231,12198325..12198868,12199099..12199443,12199560..12199670

Expression

GEO Profiles:Os10g0375600

Genome Context

<gbrowseImage1> name=NC_008403:12192690..12199924 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:12192690..12199924 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcggcggacgcgcggcgcttcgcggtcgtgccgcagctagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtggctcgcttttcctatttgatcggaaagtattgagatactttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaatctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagaggattttatgcacattgttcttgtacattatcttgagaccaagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcagatgtttattcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgcaaataatggacatgagtcattgtggaatggggttatgaaacctgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctatctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcaccgtggcccctatggttttgcaagaccagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactcttcgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataatgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcgatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagagtcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatgtaactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacgcactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggcctacagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcaaagataaacctgctggagatgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctag</cdnaseq>

Protein Sequence

<aaseq>MAAAADARRFAVVPQLDIAQILKEAQQRWLRPAEICEILKNYKS FRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVL HCYYAHGEENENFQRRTYWMLEEDFMHIVLVHYLETKGGKSRTRGNNDMHQAAVMDSP LSQLPSQTIDGESSLSGQFSEYEEAESDVYSGGTGYHSFTQMQQQQNGIGPVTDASMF SSRVSASSIGNYQGQHAMGHTTNFYSSSQHDSPLVLSDPNLELANNGHESLWNGVMKP DEGTVQMTHLQPPVHPEQGMFTTEGQGVEYLTFDEVYSDGLSLKDIGAAGADVEPFWQ LSSATADISATENSVQQNDGSLGAAIGFPFLKTQSSNLSDILKDSFKKSDSFTRWMSK ELLDVEDSQIQSSSGAYWNTEEADSIIEASSREPLDQFTVAPMVLQDQLFSIVDFSPS WTYAGSKTKVLVTGRFLHANEVTERCKWSCMFGEVEIQAEISADGTLRCYSPPHKPGR VPFYVTCSNRLACSEVREFEFRPSDSQYMDAPSPLGATNKVYFQIRLDNLLSLGPDVY QATITNPSKEMIDLSKKISSLLANNDEWSKLLKLADDNEPLSHDQQDQYAENLIKEKL HVWLLHKVGDGGKGPSVLDDEGLGVLHLAAALGYDWAIRPTVTAGVNINFRDFHGWTA LHWAAFCGRERTVVALIALGAAPGALTDPHPNYPAESTPADLASANGHKGISGFLAES SLTSHLQALNLKEANMSEISGLPGIGDVTERNASQPAIGDSLGAVRNAAQAAARIYQV FRVQSFQRKQAVQYEGDKGGISDEHALSLLSMKPSKSGQLDPLHAAASRIQNKYRGWK GRKEFLLFRQRIVKIQAHVRGHQVRKHYRKIVWSVGIVEKVILRWRRRRAGLRGFRPT EGAIESSSGGTSSNLVKDKPAGDDYDFLQEGRKQTEERLQKALARVKSMVQYPEARDQ YQRILNVVSKMQESQTVQEKILDESTEMDEGDFMSEFKELWDDDTPLPGYF</aaseq>

Gene Sequence

<dnaseqindica>187..235#994..1113#2010..2125#2197..2285#2485..2527#3368..3512#3641..3760#3839..4158#4369..4743#4848..5542#5636..6179#6410..6754#6871..6981#accccgaaaaatcccccacaaaaaaaagaaaaaaaaacccaaaccccctcgcgcggaggccgagagagatcccccgctccgctccgatccccaggcgtgcgcgcgtgcggggctcgccgcgcgtcgcatggtggcggcgcggccgccggagcacacgcctcggcctcgataccccccaccacagccatggcggcggcggcggacgcgcggcgcttcgcggtcgtgccgcagctaggtgagcataacacgcgcggggtttgggcggagagccgcggctgcgtcgccgtcgctctggtccggatgggggcacgccgcgcgtgtcgcgcgggggtgctttgtcggctcgttccgatctggtgtggtggatggatcatggatggacaggggagggggggtcgtcgttggtcgcggtcaacgcgccggtcgtggttacctcgcggctattgcttgggggggggggggggtgggggtagcggagggattggtagagctgtagtggattttttttttgttttgtttggcgttgtggaagatttttcgttcgattctgctgcttcgagtgttggtgtagatcgggctcctacggattggtttcatttctcggtgatagtctctctgtttttttagtccattgctccagtgattattactgttctagtaaatgaaatgcggtgtcgttgcatttagcgttgaatggagtaagtattgggctggattttggagcttggactgcagcgcgcacaatttagtttcgtgcgtagagcagttggttgtactactttttttggttcagtcatgcttttgttcccctttcgaaacgaggggatcatgttggccggcctgcagttctccacttgtgtggacaagagtgttagtagtatcggttggttctgaaagagaattttgttatgtgatgatgctgtctatgattttttttttttgagaaatatggtgcactgtttaactgtcgctgactctgtgatctataaacagatattgcgcagatactgaaggaggctcaacaacgatggttgcgtcctgctgaaatttgcgaaatacttaaaaactacaaaagtttccgtattgcaccagaaccaccaaacaggcctcaaagtaggatacttgtctccttaattaaatgttgctctaatttgttgtgcttttgtattgaggttatttttatcggtgaatcatcataattaaaaataatcatttgaaaaaaatactaggagaaacatgaaatttgattgcatgctaatttgtgaaaatatctttaaccttaataatatgaagttctgaacttctatcttatagctgcctgcatgtattatggtagttttagcttgttatttaccttttgtgccacgttgtattcctgtttaatttctgtgtgcatcataagtaaataaaacatactacctccgttttttttatgtatgacgccgttgacttttcacataatgtttgaccattcatcattttcaaaaatttagtataaatatgtagaagtataagttaagattatagtttctttgatggtaaaacaagtcacaacaaaataaatgacatttatatatatatatttttgaataagacaaaggatcaaacgtcacgtcaaaagccaacaacatcatagatcaaacattaaaaaacggaggtagtaatatttattactgggctccttatgactgttacaatggaacacttgtcaggctgcattagtgaggtatcaatatgcatttcttttaccatcaaagagttattctattctcttgactttgatgcctttccttcatgaaaaaaaatactgtattgcacataaaacaagatgtactggtatgtgaatttaaaaatctactttttattgacctgatcgtttagttgcaacactagtaaacagttcacttttcttacattaccaattaccattgcatgcatgtaattgaagttgataaagtgcctataccatcctcaagttcaatatttctgatcattcttgccctgcctaggtggctcgcttttcctatttgatcggaaagtattgagatactttaggaaggacggccataattggaggaagaaaaaggatggaaagactgtcaaagaagcacatgaaaggctgaaagtaagtcactttgcgttatgtagtgattatttatcaatgtgaataagactcactgttgtttgccaatccagtctggaagtattgatgtgcttcactgctactatgcacatggagaagagaatgagaacttccaaaggaggacttactggatgttggaagagtaagccgaattcttccaaaaatattacatgttcgtttatgttattagcaatgctataattgttctgagcctatgaggctatgaacacaaattctttatcagaggcgcataaatgaacacacttgcatgtagagtttgcatacagaattttagttatttgcatttggataaccttatagagttacccttgcttttgcagggattttatgcacattgttcttgtacattatcttgagaccaaggtattactgaactctcctatctttcacttaatgattagcttatatctaccttaatctacattccatctttcggtatccaaaagttacatgcattgtttagcgccataatgtttgattcctttttctggcgctttcattttttttattgtggactttatttattttaattttttattgaccaaatactagtactatattgcaccactgtgctacgaaattgtagtactatgattatttagttttgatgattgatattcacataatttgggatatcacttatgtatgctttcgtgcttgctagcaatctttacatgcatttttcagaaatacacatttttcctttgtatttgtacttaaggtggtgcttgttacgtgtaatgatttttgaattaattatatgtcagctaccaattccacgatacagaaaacagcggtatgataccaactctaggagttacatgatattgacctgacttaatgtaagtctcatattaagaattagataaatattaggtgttaacatctgattttttttgtagtatcattatataatgataatgaatatgtcttaaaaattagacggaacagtgtgtaatttttttcatttgtatagttggaactagttttagaaacagagtgctattattttctgatttatctgcttagtgaattttcattcatttccatttccatttctgtagttcaagtcagttttcttatttcacattgtgaatagaattcctcattgcctgttgaagagagctttttcctctcttgttttgctcttgtaagaagtcacttaaccctcattgcatcgtgctatgcgactatgaacttcagggtgggaaatctcgtactaggggcaacaatgacatgcatcaagcagctgttatggatagtccattaagtcaattaccttcacaaactatagatggtgaaagctcacttagtggacagttctctgaatatgaagaggcagaatcaggtaaaaatgttggctgtcttcttcggttatctataatgataatgaaaatactacacagaaaaaaatagtttcactgatacatattccaactatgcacagcgtatctaaagcaaaattcggtgcagcagatgtttattcaggaggaaccggataccactctttcactcagatgcagcagcagcaaaatggaattggacctgtgactgatgcttctatgttcagttctcgtgtttctgcttcatccataggtaattaacaagagaaatacgcatgtggtttgaacctaagtgaagtcgatattaacttcttttgtcacatgatttcaggtaattatcagggacaacatgctatgggacatacaacaaacttctattctagtagtcaacatgattcacctcttgttctcagtgatccaaaccttgaacttgcaaataatggacatgagtcattgtggaatggggttatgaaacctgatgaagggactgttcaaatgactcatctacaacctcctgttcatcctgagcaaggcatgttcaccacagaaggccaaggggttgaatatttgacattcgatgaagtatattctgatggactcagtctgaaggatataggtgctgcaggtgctgatgtagaaccattctggcaggtatgtgcaagttttgtaatagatgctaaaatattgtcctgttgtaaagttaatagttgctctcatatggtaattcttccccatattgtgcgctaaaaatcaaagtttcaactctcatatggtaattcttccctatattggcgctcttggtgcttttgtctggtttagttttcttcaaacagctatctaacagaagccattgcatttcagctctctagtgctactgctgatatatctgcaacagagaacagcgtccaacaaaatgatggatctctaggggcagctattggcttcccatttttgaaaactcagtcatccaatctatctgacatcctgaaagacagctttaagaaatctgacagttttacaagatggatgagcaaagagcttcttgatgttgaggattcgcaaattcagtctagctcaggggcatactggaacactgaagaggcagatagtatcatcgaagcatcaagccgtgagccactggatcagttcaccgtggcccctatggttttgcaagaccagctattcagtatagttgatttttcgccaagctggacatatgcaggctcgaagaccaaggtatagttttctgatggtgaaacttttcagctttttttttttgttgaaattccagctaaaatagtgttctccaggtgctcacaaatatgttgtatgcaatgtaggttttagttactggtagattcttacatgctaatgaagtcacggagagatgcaagtggtcatgcatgtttggagaagttgaaattcaagcggagatttcagcagatgggactcttcgatgttattctcccccgcataaaccaggcagagtccctttctatgtcacctgttccaacaggttagcctgtagtgaagtacgtgagtttgaatttcgaccaagtgactctcaatacatggatgctcctagcccgcttggtgcaaccaacaaagtttatttccagatacgtcttgacaacctattgtccctggggccagatgtgtaccaagctactataactaaccccagtaaggagatgatcgacttgagcaagaagattagttcactgttggcaaacaatgatgagtggtccaagttacttaaattggctgatgataatgagcctcttagccatgatcagcaggatcagtatgctgaaaacttaattaaggaaaaattgcatgtctggcttctccataaagtaggcgatggtggcaaaggacccagtgtgttagatgatgaggggctgggtgttcttcatcttgcagctgcccttggttatgattgggccataaggccaactgttactgctggtgtgaacataaatttcagagattttcatggatggactgcattacattgggctgcattttgtggcaggtaagtgactaaaatggtgaattaggctaagagtatgttttttctttaatttttgaatattggacagtaaatactctttgatctatgttgcagagaacggactgtagtagcacttattgcactgggagcagctcctggagctttgacagatccacatcctaattaccctgctgaaagcacaccagcagaccttgcatctgctaacggacataagggcatctctggtttcctggcagagtcctctctgacaagtcatcttcaagccctcaatctgaaggaagccaatatgtctgaaatatctggtctacctggtattggagatgtaactgagagaaatgcatctcagcctgcaattggagattccttaggtgctgttcgaaatgccgctcaagctgctgctcgaatatatcaagttttcagggtgcaatccttccagaggaaacaagcggtccaatatgagggtgacaaaggtggcatatcggacgaacacgcactttcactcctgtctatgaagccatccaagtcaggccagcttgatcccctgcatgctgcagcatctcgtatacaaaataaatataggggatggaaggggagaaaggaatttcttctcttcagacaacgaattgtgaagatccaggtactgtatattatatatattgaaatccaacagataatttagtttcccatatttctcaatagttgcattgctcttatcaaaattttgtttgtctgccactgggaatattaatgaacacctggatggatattaagatcaagagtactatagtgggataatctttgttttaccgtctaatccgtcattggctaatgctgatatatatgtatatatatctttttgctggctaggctcatgtgcgaggccaccaggtgaggaagcattatcggaaaatagtttggtctgttgggatagtggagaaagttatattgcgctggaggcgaagaagggctgggttacgtggttttaggcctacagaaggtgcaatagagagcagcagtggtggcacaagtagcaatttggtcaaagataaacctgctggagatgattatgatttcttgcaagaaggacggaagcaaactgaagaaaggctgcagaaagctcttgccagagtgaagtccatggttcaatacccagaagcaagggatcagtaccaaaggattttgaatgttgtttcgaaaatgcaagagtctcaggtaatgtcctggttccctataaacaagtagcattaagcgttgctgttatgtcttactctgcaacttttatccaaatggaacacttacgccgtttgtccctgctgatatgacgacagaccgtgcaagaaaagattttagacgaatcaaccgagatggatgaaggtgatttcatgagtgaattcaaggagctgtgggatgatgatacaccactccctggttatttctagtgttctagactaactggtggtgtctctgtaaatctcttctcttcagttctgctgaattgacacctgccgataacccaaactctcaacatagcatgaatagcatgatcttaaaatcttgaatgcttggatttggattcagttgtggtattcttgcttttatgttatagcgttatgtacagtagaatcttattttatcattgaaggagccatgtatatgcagtatgaaactaatgcagaaagttggtggttgtatc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0375600, RefSeq:Os10g0375600