Os03g0860900

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Revision as of 13:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0860900| Description = Lissencephaly type-1-like homology motif domain containing protein| Version = NM_001058511.1 GI:115456750 GeneID:4334...")
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Gene Name

Os03g0860900

Description

Lissencephaly type-1-like homology motif domain containing protein

Version

NM_001058511.1 GI:115456750 GeneID:4334869

Length

6406 bp

Definition

Oryza sativa Japonica Group Os03g0860900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:37190932..37197337

Sequence Coding Region

37191119..37191150,37191279..37191376,37191461..37191585,37191671..37191918,37191994..37192063
,37192145..37192250,37192552..37192601,37192689..37192889,37193454..37193531
,37193627..37193836,37193918..37194044,37194123..37194232,37194606..37194755
,37195654..37195809,37195896..37196024,37196105..37196302,37196802..37196945

Expression

GEO Profiles:Os03g0860900

Genome Context

<gbrowseImage1> name=NC_008396:37190932..37197337 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:37190932..37197337 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcggagcaattgggaggcagacaagatgctggatgtgtacatctacgactacctggtgaagcgcaacatgcacaacaccgctaaggccttcatgaccgagggcaaggtcgccaccgatcccgtggccatcgatgctcctggaggcttcctcttcgaatggtggtccatcttctgggacatcttcgatgcaagaacaagagacaaaccaccacagcctcagcctcagcctcctcctcctattccgatagacatcaaatccagggaacagcagatgaggctccagctactgcaacagcagcagaatgcccaccagcagcgaagagatccccctctcaatgctgctatggatgctctcaactctgatgtttctgctgtcctcgcttctaaaatgatgcaagaccgaatgaggaaccccaatcccaccgattccgatgcttcccaccaactcctggacgctaacaggattgctctcctcaaaccagcaactaaccaaactggacaactggttcagggtgcctcggtcaacatgtcagctctacagcagatccactcaagaaaccagcaacctgacatgaaaggtgatgctgccatgtcacaaagatcaatgcctacagacccttcaactttgtatggatcaggaatgatgcaaccaaaatctggattagtttccactggattaaatcaaggtgttggtagtgtaccactgaaaggctggcctcttacagtcccaggtattgaccaactccggtcaaatttaggtgtgcagaagcagttgatggcatctccaaaccaatttcaacttttatcgccacaacaacaattaattgctcaagcacaatcacagaatgaccttgctagaatgggttctccagctccatctggttcaccaaaggttcgaccagatgaatcagattatatgatgaagttgaagatggctcaaatgcagcagccctcaggtcaccgtcttatggaattacagcagcagcagcagcaattgcaacagaatactagaaaacggaaaccaacctcttccggcgcagctaatagtacaggcacaggaaatactgttggcccttccccaccctcaactccttccactcacacacctggtggtgggttaccagtggctagcaacatgaacattgtacaaaagagttcattaatttgcggtgcagatggaaccagtggacttgcttcatcctcaaatcaaatggataatctggatagttttgttgattttgatgaaaacgttgattcatttttgtcaaatgatgatggagatgggcgggacatatttgcttcattgaagaaagggtcctcagagcaggattccttaaagggtctctcgttgagtgagtttggtaataaccgtacaagcaacaataaggttgtttgctgtcacttctccacagatgggaaattgctggctagtgctggccatgagaaaaaggtcttcctctggaatatggacaatcttaacatggatactaaaatagaagaacatacgaactttattacagatataagattcaaaccgaattcaactcagttagctacatcatcttctgatggaactgttcgactatggaatgcaatcgaacgaactggtgctgtacagacttttcatgggcatagttcccatgtaacctctgtagattttcacccgaaatctacagaggttctatgctcttgtgacgacaatggagaaatttgtttctggaaaattggtcaaagtaaagtttcacgtatctccaggatgaaacagggtggtactggtagggtcaggtttcagcctcaaattggacagctcctagctgtggcaactggaagcattgtgaatattgttgatgttgaaaaggaggcaagtttgcactcactgcctaaggttcataccaatgaggtaaactgcatctgttgggatgaaaagggtgaacgtgtggcatctgtaagtcaggatactgtgaaggtttggtcggtagcatcaggcgcatgcatccatgagttaagatctcatggaaaccaataccagtcttgcatatttcatccaagatatccgaatgttctgatagttggtggttaccagacgatggagctatggagcttgtcagataatcacagaaacacggtccaggcacatgaaggccttatagctgctttggcgcactctcagttcactgggatgatagcttctgcgagccatgacagatccgtgaaactgtggaaatga</cdnaseq>

Protein Sequence

<aaseq>MARSNWEADKMLDVYIYDYLVKRNMHNTAKAFMTEGKVATDPVA IDAPGGFLFEWWSIFWDIFDARTRDKPPQPQPQPPPPIPIDIKSREQQMRLQLLQQQQ NAHQQRRDPPLNAAMDALNSDVSAVLASKMMQDRMRNPNPTDSDASHQLLDANRIALL KPATNQTGQLVQGASVNMSALQQIHSRNQQPDMKGDAAMSQRSMPTDPSTLYGSGMMQ PKSGLVSTGLNQGVGSVPLKGWPLTVPGIDQLRSNLGVQKQLMASPNQFQLLSPQQQL IAQAQSQNDLARMGSPAPSGSPKVRPDESDYMMKLKMAQMQQPSGHRLMELQQQQQQL QQNTRKRKPTSSGAANSTGTGNTVGPSPPSTPSTHTPGGGLPVASNMNIVQKSSLICG ADGTSGLASSSNQMDNLDSFVDFDENVDSFLSNDDGDGRDIFASLKKGSSEQDSLKGL SLSEFGNNRTSNNKVVCCHFSTDGKLLASAGHEKKVFLWNMDNLNMDTKIEEHTNFIT DIRFKPNSTQLATSSSDGTVRLWNAIERTGAVQTFHGHSSHVTSVDFHPKSTEVLCSC DDNGEICFWKIGQSKVSRISRMKQGGTGRVRFQPQIGQLLAVATGSIVNIVDVEKEAS LHSLPKVHTNEVNCICWDEKGERVASVSQDTVKVWSVASGACIHELRSHGNQYQSCIF HPRYPNVLIVGGYQTMELWSLSDNHRNTVQAHEGLIAALAHSQFTGMIASASHDRSVK LWK</aaseq>

Gene Sequence

<dnaseqindica>188..219#348..445#530..654#740..987#1063..1132#1214..1319#1621..1670#1758..1958#2523..2600#2696..2905#2987..3113#3192..3301#3675..3824#4723..4878#4965..5093#5174..5371#5871..6014#gcctggttccatttcttcctcctttgttgttggattccagttccaggcgaggcgagcggcaaatccaaatcggcacacgagcgagactgcgagtgcgagcgcgagcgcgagcgcgagcgattcgattggagttggagaccatctcgccgccgccgccgccgccgcctcttcttactgctgcttgtagatggcgcggagcaattgggaggcagacaagatgtgcgtgttttgtgaatttcttcttcttcttcttcttcctcctttcggatgcggaattgattagattcatcgatcgatttgggggtgtggatgaactgaactgatctgatggatgcgtgcgattccaggctggatgtgtacatctacgactacctggtgaagcgcaacatgcacaacaccgctaaggccttcatgaccgagggcaaggtcgccaccgatcccgtgggtacgcacgcatcctatacttcttcttcttcttcttctcttgattgatagattgattgattgatgctgagccaacggaacgcagccatcgatgctcctggaggcttcctcttcgaatggtggtccatcttctgggacatcttcgatgcaagaacaagagacaaaccaccacagcctcagcctcagcctcctcctcctattccgatagacgtattctcgcactactcgtaacagaaaatcatcatcacaatcatgccgggtcccaaaatctctaatgctcttgcctctgttttagatcaaatccagggaacagcagatgaggctccagctactgcaacagcagcagaatgcccaccagcagcgaagagatccccctctcaatgctgctatggatgctctcaactctgatgtttctgctgtcctcgcttctaaaatgatgcaagaccgaatgaggaaccccaatcccaccgattccgatgcttcccaccaactcctggacgctaacaggattgctctcctcaaaccagcaactaaccaaactgggtaactttattttcttcttccccccagcaaccatctcaaagattaccgttcctcatgaaaactctcgccattcagacaactggttcagggtgcctcggtcaacatgtcagctctacagcagatccactcaagaaaccagcaacctgtaatacccttccatcttctcaaactccattggtttatgtaccgcctctcacttcttactctctgtccaaccattttcaaggacatgaaaggtgatgctgccatgtcacaaagatcaatgcctacagacccttcaactttgtatggatcaggaatgatgcaaccaaaatctggattagtttccactggtgagttaattgcaatcacacaactattctctctgtttctctatgaggaaaacagatggtaaccttggactttatggaataggtgcatgacattcccataaaaatctgttttgtgtacaagcgctttttttttatgcctagtattctcagatggaagataagctttagccccaaagttcacacttggggatttcttgatttatttgtagctagttagcatgtggccatcagcgtttgattagcaattccagtaaatgatggaaggcacatttttccttataattcttttgcttctacttaggattaaatcaaggtgttggtagtgtaccactgaaaggctggcctcttacagtgagtttgctgatatccctttccatatgcttgcatacttctctggtttccttgaagaaaagcttacctactagttgcctgctgaaggtcccaggtattgaccaactccggtcaaatttaggtgtgcagaagcagttgatggcatctccaaaccaatttcaacttttatcgccacaacaacaattaattgctcaagcacaatcacagaatgaccttgctagaatgggttctccagctccatctggttcaccaaaggttcgaccagatgaatcagattatatgatgaaggtcagtatgcaatcggtctgagaaactttatttaagagttaatgacatgtccaaacataagtttgcatatccataatgacctatgttttgctttcatattattctacggttctatcaatacattcacctgtttcaattaagaacactacgttagtggttcactttctgttccttgttctgtgttataattactcaggatattttctttgatatttgaatggaaattaaactggccattttgttttattttgtaataatattacagttttccctgctttgtatttgacattagctctttatcttgtattttaaaaaaaaaatctaaatccgaatttcagtatttttttttgttttaacttatggacccacctcaaaatcaatggcttagatattcgctttctctgataatgtgataatttctaattgagaacaattctggaggttcattttcaccttgttctagcaacacaatatattctatgggtaattatactatttttgtcgttttttagtactgtatgcatgtattcattaactgcacacactattttgcaatcctattagttgaagatggctcaaatgcagcagccctcaggtcaccgtcttatggaattacagcagcagcagcagcaattgcaacaggttgaatgaactaattagcttgttacaaataatatcaactttccctaactctatatgggcgatacctgaatgttccaattattcttgatatccagaatactagaaaacggaaaccaacctcttccggcgcagctaatagtacaggcacaggaaatactgttggcccttccccaccctcaactccttccactcacacacctggtggtgggttaccagtggctagcaacatgaacattgtacaaaagagttcattaatttgcggtgcagatggaaccagtggacttgcttcatcctcaaatcaaatggtatgtgctgtgctcttccatcaacgttatcagtttttggcaatcagttggctgtgcttgagtaacttctgttattgacaggataatctggatagttttgttgattttgatgaaaacgttgattcatttttgtcaaatgatgatggagatgggcgggacatatttgcttcattgaagaaagggtcctcagagcaggattccttaaagggtaaatatttcaagttcttgatttgtgtcatacatctgtgaacagagaaaaatttagaataagttcatttttgtgtaggtctctcgttgagtgagtttggtaataaccgtacaagcaacaataaggttgtttgctgtcacttctccacagatgggaaattgctggctagtgctggccatgagaaaaaggttgctttgttaaactctattatatattttgagggggtttaataatttctctcgcaagaagttgctctgttgtgccagatcgtaagaatatatattccttgaagatcattgctatttcttctataactgcaattcaactaataaaagtaattttgatgttttcacacagttataactggcaaaatcaaatttgtgtttccagtaatgacatttcatcattgtcttctccgtacatcctttgccccacttttacatgcagaatgatgttataattttcttagtgcctttttcttctatttgacttgggaagagaagtaaagatgtttgtatatctggggcatatttggttctaaagaattctacaatgttgcaggtcttcctctggaatatggacaatcttaacatggatactaaaatagaagaacatacgaactttattacagatataagattcaaaccgaattcaactcagttagctacatcatcttctgatggaactgttcgactatggaatgcaatcgaagtaatttctttttagtcttttatctatctatttttctcctctatagtaattttcttacttaggtaagttatactttcctttttggttcatttcagagctgactattgacattgcatcgtaaacttttattttctggctgtggcaagagagcaccgcaaacctatatcacctactatgtatattactgtttttaagctcgctcttgcaaacaaggaattttttggggaattttctatcacaaacctttctatgggtgctattgtggcactcatcgcataagctgccaaatcagatttttaaaaaagaacaggctcttttagttactgccacatctctctatattgatctatctgaatcttaaccgatggcccacatgggagttacgtagtagttgttatgacccaagatttgctgtaggtgattttatctagatatttatacaacattgtgaagcacttgaggtctgtcagagtactatcgtatctttcatgctgcacatgaacaccttctcttgtgcataacccaacttgatgatgtaaatcgtgcctcatttgttacagggatactgttagttttgaaagttgatattgaagcagaaatctctagttgctaaatgcaaaactatatgcaagaatctgaaacagtactgctgtaagctgtcatttgatacttcccgtggaatttcttatcatgtcatggattccataagctatcgctcacgcatagtaaatgcgcatgtgacgtcactgtagttctgtgccaatccatgtactgtgaacaaatgccttgattttaatttgtttcatttcatgatgctagtggttgactatgaggcagtcaaatcacactttactgttttgctggtaacctaagtcaaacatgttctcgatttttccagcgaactggtgctgtacagacttttcatgggcatagttcccatgtaacctctgtagattttcacccgaaatctacagaggttctatgctcttgtgacgacaatggagaaatttgtttctggaaaattggtcaaagtaaagtttcacgtatctccagggttggtccttggttccttatcctttgaaatttgtaaaccgttcacacttgggccaattcaatgatatttacttgatgtcattacagatgaaacagggtggtactggtagggtcaggtttcagcctcaaattggacagctcctagctgtggcaactggaagcattgtgaatattgttgatgttgaaaaggaggcaagtttgcactcactgcctaaggtaatacatatgggatgcttgatcttatgcagcttttgcaacgcaaggtaatcaatcattgttttgtttgcttgagttaggttcataccaatgaggtaaactgcatctgttgggatgaaaagggtgaacgtgtggcatctgtaagtcaggatactgtgaaggtttggtcggtagcatcaggcgcatgcatccatgagttaagatctcatggaaaccaataccagtcttgcatatttcatccaagatatccgaatgttctgatagttggtggttaccaggtaaatcctttacacatataactgccttttgacattctgcgattgccaacatgctagataggaacaccttttgccatggtcataagagcctagagacttgtttattttctcacattcttttctctcctatcataacatggaggggggggggggaggaggctgtgtgttggagcgagagtgggggtattaaggggaagggtgagtgagagagagagagagagagaacgtgatattctagtacactgacgagtattatatggcttcacttatcctaaagacaagtacactattttcctcttgctattaagtcacaaagcattgaccgccctggtggtatcaatgtaaatagccgagcacatattacatgtcttaagaaagtgctacctatattaatttcttagacaaattgctcctcctcgataatatgtcttgtgtgtccaaaagacttttaaccgtcggaatggcaactgattgatggtctttggtgtcatttgtgcagacgatggagctatggagcttgtcagataatcacagaaacacggtccaggcacatgaaggccttatagctgctttggcgcactctcagttcactgggatgatagcttctgcgagccatgacagatccgtgaaactgtggaaatgaagaaggattggagatgaagaggagaaggggcctcagcgcgacggctgccagaatcttaacttgcatagcttcccagacgtgcgtacgtatagagtttgtgttgtttatttttgattcgttggcttcgttacagaaggtagcccgtaatttgttattatactagtttagacaaatgaatgactttttttactttaggggtgaggtgtacatggttggggcaaaaatgttgacaatactaatctatgtggaacgtgctgtgtaaattaataattaatagaaagagcaatggaatttgaagagaaaacatgaattattccatgtgtgtgtgtgtgtagtgcagtgtatgtatatgggatttgaaaatgaatggtagcaagaaaacaattcgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0860900, RefSeq:Os03g0860900